Rh6DG358000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011065
Physical Location & Seq
Forward (+)
55611332 .. 55612729
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG358000.1

Sequence Viewer

Length: 948 bp
ATGTGTGGCGGTGCTATAATCGCTGAATTCATCCCTCGCAACCGCGGCCGCCGTGACTCCGCCTCTGAGATATGGCCCAACTCGCCCTTCGCGAAGCTCAATCCCGACAATTTCTTCTTCAACTTAGATCTCACCCCACCTACTCACAAGGACTCACCTCCGAGCAAAACATCCCAACCCTTTTCAGGGGGTCTGGAAGAACAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGCAAATGGGCCGCTGAGATTCGCGACCCCAGAAAAGGAGTCCGAGTCTGGCTCGGTACCTTCAACACCGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAGGCTCGCAAAATCCGTGGCAAGAAAGCCAAGGTTAATTTTCCTAATGAAGATGACCAAGAGTACCCCCATCAGACTCATCTGAAAACTTCCCATCCTCATCCATTTCAACCCAATACAGGTAATTTCAATGACAATCATATCCCAAAAGGCTTTGATATGGGTTTTGGTTATGATCTGAACCAGAGTGCAGCATTTCCCTCAAATTCAAATGGTTCAAATGGTTTTAACTCGGTGGTGGTTAAGACTGACCCAATTGTTGTTTCTGGGGAAGAGAATTCTGGGTCTGGTTCAGAGGGGACTTACTCCTGTACAGGGTTGGTGGGTTGCAATCACAATGGGAAAGAGAGAGAGGAATCAACACAAGGTAATGCGATTGTGGCCGCTGAGGAGAATGAAGTGCAGAAGCTTTCTGAGGAGCTACTGGCGTTTGAGAACTACATGAAGTTCTATCAGATTCCCTATCTGGATGGGCAGTCCACAGCCCCTGTAAATCCTGCTGCGCAGGAAAGCATGGTTGGCGATCTGTGGAGCTTTGATGATGAGAATGAGAATGTTCCTGCTTCTGTCACATCTTCCTTCGATTGA

Protein Analysis

315

Amino Acids

35.04

Weight (kDa)

5.61

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 79 - 127 7.8e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47520
fragaria_vesca FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica MD11G1306500.v1.1
prunus_persica Prupe.8G264900_v2.0.a1
pyrus_communis pycom03g23120 pycom11g26820
rosa_chinensis RchiOBHm_Chr6g0294441
rosa_laevigata RLG00000011869
rosa_multiflora Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii Rroxscaffold_7G00173330
rosa_rugosa Rorug06G0244700
rosa_samantha Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana Rw6G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 864
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 3 cut(s) 45, 92, 285
AciI CCGC 9 cut(s) 9, 43, 45, 49, 60, 210, 273, 330, 744
AcoI YGGCCR 2 cut(s) 46, 741
AcsI RAATTY 3 cut(s) 26, 565, 637
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 3 cut(s) 319, 425, 673
AfiI CCNNNNNNNGG 6 cut(s) 185, 186, 216, 296, 479, 675
AgsI TTSAA 6 cut(s) 121, 325, 470, 490, 570, 579
AjuI GAANNNNNNNTTGG 6 cut(s) 71, 103, 607, 639, 861, 893
AluBI AGCT 5 cut(s) 97, 350, 769, 781, 894
AluI AGCT 5 cut(s) 97, 350, 769, 781, 894
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 4 cut(s) 46, 74, 270, 741
ApeKI GCWGC 4 cut(s) 250, 341, 551, 860
ApoI RAATTY 3 cut(s) 26, 565, 637
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 255, 865
AspS9I GGNCC 2 cut(s) 75, 270
AsuHPI GGTGA 2 cut(s) 124, 147
BanI GGYRCC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 262, 353, 563, 847
BccI CCATC 3 cut(s) 438, 462, 824
BceAI ACGGC 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 261
BglII AGATCT 1 cut(s) 127
BisI GCNGC 8 cut(s) 46, 49, 251, 273, 342, 552, 744, 861
BlsI GCNGC 8 cut(s) 47, 50, 252, 274, 343, 553, 745, 862
BmgT120I GGNCC 2 cut(s) 75, 270
BmiI GGNNCC 1 cut(s) 319
BmsI GCATC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 297, 329
Bpu10I CCTNAGC 1 cut(s) 747
BsaJI CCNNGG 4 cut(s) 43, 257, 376, 390
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 6 cut(s) 185, 186, 216, 296, 479, 675
Bse1I ACTGG 1 cut(s) 789
BseDI CCNNGG 4 cut(s) 43, 257, 376, 390
BseGI GGATG 5 cut(s) 30, 170, 454, 460, 835
BseLI CCNNNNNNNGG 6 cut(s) 185, 186, 216, 296, 479, 675
BseMII CTCAG 4 cut(s) 57, 267, 738, 765
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 2 cut(s) 764, 791
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 262, 353, 563, 847
BsgI GTGCAG 2 cut(s) 570, 782
Bsh1236I CGCG 3 cut(s) 45, 92, 285
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 48, 76, 272, 743
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 6 cut(s) 185, 186, 216, 296, 479, 675
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 4 cut(s) 48, 76, 272, 743
Bsp1407I TGTACA 1 cut(s) 671
Bsp143I GATC 3 cut(s) 127, 535, 883
Bsp19I CCATGG 1 cut(s) 257
Bsp68I TCGCGA 2 cut(s) 92, 285
BspACI CCGC 9 cut(s) 9, 43, 45, 49, 60, 210, 273, 330, 744
BspANI GGCC 4 cut(s) 48, 76, 272, 743
BspCNI CTCAG 4 cut(s) 58, 268, 739, 766
BspFNI CGCG 3 cut(s) 45, 92, 285
BspLI GGNNCC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 671
BsrI ACTGG 1 cut(s) 789
BssECI CCNNGG 4 cut(s) 43, 257, 376, 390
BssMI GATC 3 cut(s) 127, 535, 883
BssT1I CCWWGG 2 cut(s) 257, 390
Bst6I CTCTTC 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 210, 367
BstDEI CTNAG 5 cut(s) 66, 124, 276, 747, 774
BstDSI CCRYGG 3 cut(s) 43, 257, 376
BstF5I GGATG 5 cut(s) 30, 170, 454, 460, 835
BstFNI CGCG 3 cut(s) 45, 92, 285
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 255, 865
BstKTI GATC 3 cut(s) 130, 538, 886
BstMBI GATC 3 cut(s) 127, 535, 883
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 8 cut(s) 20, 45, 82, 261, 338, 347, 740, 879
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 3 cut(s) 45, 92, 285
BstV1I GCAGC 4 cut(s) 262, 353, 563, 847
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 4 cut(s) 48, 76, 272, 743
BtgI CCRYGG 3 cut(s) 43, 257, 376
BtsCI GGATG 5 cut(s) 30, 170, 454, 460, 835
BtuMI TCGCGA 2 cut(s) 92, 285
Cac8I GCNNGC 2 cut(s) 210, 367
CaiI CAGNNNCTG 1 cut(s) 848
CciNI GCGGCCGC 1 cut(s) 46
CfoI GCGC 2 cut(s) 255, 865
Cfr13I GGNCC 2 cut(s) 75, 270
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 3 cut(s) 318, 424, 672
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 3 cut(s) 258, 802, 874
CviQI GTAC 3 cut(s) 318, 424, 672
DdeI CTNAG 5 cut(s) 66, 124, 276, 747, 774
DpnI GATC 3 cut(s) 129, 537, 885
DpnII GATC 3 cut(s) 127, 535, 883
EaeI YGGCCR 2 cut(s) 46, 741
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 257, 390
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 354
EcoRI GAATTC 2 cut(s) 26, 637
EcoT14I CCWWGG 2 cut(s) 257, 390
ErhI CCWWGG 2 cut(s) 257, 390
FaeI CATG 3 cut(s) 261, 805, 877
FaiI YATR 9 cut(s) 17, 73, 259, 354, 501, 521, 534, 803, 875
FaqI GGGAC 1 cut(s) 673
FatI CATG 3 cut(s) 257, 801, 873
FauI CCCGC 1 cut(s) 217
Fnu4HI GCNGC 8 cut(s) 46, 49, 251, 273, 342, 552, 744, 861
FokI GGATG 5 cut(s) 17, 157, 441, 447, 842
Fsp4HI GCNGC 8 cut(s) 46, 49, 251, 273, 342, 552, 744, 861
FspI TGCGCA 1 cut(s) 864
GlaI GCGC 2 cut(s) 254, 864
GluI GCNGC 8 cut(s) 46, 49, 251, 273, 342, 552, 744, 861
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 4 cut(s) 48, 76, 272, 743
HhaI GCGC 2 cut(s) 255, 865
Hin1II CATG 3 cut(s) 261, 805, 877
Hin6I GCGC 2 cut(s) 253, 863
HinP1I GCGC 2 cut(s) 253, 863
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 8 cut(s) 56, 152, 280, 300, 306, 436, 716, 817
HphI GGTGA 2 cut(s) 124, 147
Hpy166II GTNNAC 1 cut(s) 840
Hpy188I TCNGA 9 cut(s) 67, 162, 305, 435, 444, 540, 655, 775, 816
Hpy188III TCNNGA 5 cut(s) 91, 104, 194, 284, 827
Hpy8I GTNNAC 1 cut(s) 840
HpyAV CCTTC 2 cut(s) 97, 331
HpyCH4V TGCA 3 cut(s) 551, 690, 763
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 45, 82, 261, 338, 347, 740, 879
HpyF3I CTNAG 5 cut(s) 66, 124, 276, 747, 774
Hsp92II CATG 3 cut(s) 261, 805, 877
HspAI GCGC 2 cut(s) 253, 863
KpnI GGTACC 1 cut(s) 321
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 3 cut(s) 127, 535, 883
LmnI GCTCC 2 cut(s) 778, 891
Lsp1109I GCAGC 4 cut(s) 262, 353, 563, 847
LweI GCATC 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 53, 928
MalI GATC 3 cut(s) 129, 537, 885
MboI GATC 3 cut(s) 127, 535, 883
MboII GAAGA 8 cut(s) 106, 109, 209, 238, 347, 422, 644, 927
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 127
MluCI AATT 7 cut(s) 26, 109, 397, 484, 565, 615, 637
MlyI GAGTC 5 cut(s) 50, 146, 309, 315, 430
MseI TTAA 3 cut(s) 396, 588, 603
MspA1I CMGCKG 4 cut(s) 45, 275, 332, 746
MunI CAATTG 1 cut(s) 615
MvnI CGCG 3 cut(s) 45, 92, 285
MwoI GCNNNNNNNGC 8 cut(s) 20, 45, 82, 261, 338, 347, 740, 879
NcoI CCATGG 1 cut(s) 257
NdeII GATC 3 cut(s) 127, 535, 883
NlaIII CATG 3 cut(s) 261, 805, 877
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 53, 928
NotI GCGGCCGC 1 cut(s) 46
NruI TCGCGA 2 cut(s) 92, 285
NsbI TGCGCA 1 cut(s) 864
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 373
PfeI GAWTC 3 cut(s) 280, 716, 817
PkrI GCNGC 8 cut(s) 47, 50, 252, 274, 343, 553, 745, 862
PleI GAGTC 5 cut(s) 50, 146, 308, 314, 430
PpsI GAGTC 5 cut(s) 50, 146, 308, 314, 430
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 2 cut(s) 75, 270
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 127
RruI TCGCGA 2 cut(s) 92, 285
RsaI GTAC 3 cut(s) 319, 425, 673
RsaNI GTAC 3 cut(s) 318, 424, 672
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 3 cut(s) 396, 588, 603
SatI GCNGC 8 cut(s) 46, 49, 251, 273, 342, 552, 744, 861
Sau3AI GATC 3 cut(s) 127, 535, 883
Sau96I GGNCC 2 cut(s) 75, 270
SchI GAGTC 5 cut(s) 50, 146, 309, 315, 430
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
Sse9I AATT 7 cut(s) 26, 109, 397, 484, 565, 615, 637
SsiI CCGC 9 cut(s) 9, 43, 45, 49, 60, 210, 273, 330, 744
StyI CCWWGG 2 cut(s) 257, 390
TaqI TCGA 1 cut(s) 942
TasI AATT 7 cut(s) 26, 109, 397, 484, 565, 615, 637
TatI WGTACW 1 cut(s) 671
TauI GCSGC 4 cut(s) 48, 51, 275, 746
TfiI GAWTC 3 cut(s) 280, 716, 817
Tru1I TTAA 3 cut(s) 396, 588, 603
Tru9I TTAA 3 cut(s) 396, 588, 603
TseFI GTSAC 2 cut(s) 53, 928
TseI GCWGC 4 cut(s) 250, 341, 551, 860
Tsp45I GTSAC 2 cut(s) 53, 928
TspDTI ATGAA 4 cut(s) 19, 423, 771, 818
TspGWI ACGGA 1 cut(s) 365
XapI RAATTY 3 cut(s) 26, 565, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.