Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Reverse (-)

13436473 .. 13437503

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGTGGCGGTGCTATAATCGCTGACTTCATCCCTCGCAACCGAGGCCGCCGTGTCTCCGCCTCTGATATATGGCCCAACTCGCCCTTCGAGAAGCTCAATCCCGACAATTTCTTCAACTTAGATCTCACCCCACCTACTCACAAGGACTCACCTCCGAGCAAAACATCCCAACCCTTTTCAGGGGGTCTGGAAGAACAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGTAAATGGGCCGCTGAGATTCGCGACCCCAGAAAAGGAGTCCGAGTCTGGCTCGGTACCTTCAACACCGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAGGCTCGCAAAATCCGTGGCAAGAAAGCCAAGGTTAATTTCCCTAATGAAGATGACCAAGAGTACCCCCATCAGACTCATCTGAAAAATTCCAATCCTCATCCATTTCAACCCAATACAGGTAATTTCAATGACAATCATATCCCAAAAGGCTTTGATATGCGTTTTGGTTATGATCTGAACCAGAGTGCAGCATTTCCCTCAAATTCAAATGGTTCAAATGGTTTTAACTCGGTGGTGGTTCAGACTGACCCAATTAATGTTGTTTCTGGGGAAGAGACTTCTGGGTCTGGTTCAGAGGGGACTTACTCCTGTACAGGGTTGGTGGGTTGCAATCACAGTGGGAAAGAGACAGTGGAATCAACACAAGGTAATGCGATTGTGGCCGCTGAGGAGAATGAAGTGCAGAAGCTTTCTGAGGAGCTACTGGCGTTTGAGAACTACATGAAGTTCTATCAGATTCCCTATCTGGATGGGCAGTCCACAGCCCCTGTAAATCCTGCTGCGCAGGAAAGCATGGTTGGCGATCTGTGGAGCTTTGATGATGAGAATGAGAATGTTCCTGCTTCTGTCACATCTTCCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

316

Amino Acids

34.99

Weight (kDa)

5.52

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 126	7.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	643
Acc16I	TGCGCA	1 cut(s)	864
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	1 cut(s)	282
AciI	CCGC	7 cut(s)	9, 49, 60, 207, 270, 327, 744
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	2 cut(s)	445, 562
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	3 cut(s)	316, 422, 673
AfiI	CCNNNNNNNGG	6 cut(s)	182, 183, 213, 293, 476, 675
AgsI	TTSAA	7 cut(s)	118, 322, 467, 487, 567, 576, 944
AjuI	GAANNNNNNNTTGG	6 cut(s)	71, 103, 380, 412, 861, 893
AluBI	AGCT	5 cut(s)	97, 347, 769, 781, 894
AluI	AGCT	5 cut(s)	97, 347, 769, 781, 894
Alw26I	GTCTC	3 cut(s)	61, 629, 701
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	4 cut(s)	46, 74, 267, 741
ApeKI	GCWGC	4 cut(s)	247, 338, 548, 860
ApoI	RAATTY	2 cut(s)	445, 562
AseI	ATTAAT	1 cut(s)	615
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	252, 865
AspS9I	GGNCC	2 cut(s)	75, 267
AsuHPI	GGTGA	2 cut(s)	121, 144
BanI	GGYRCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	4 cut(s)	259, 350, 560, 847
BccI	CCATC	2 cut(s)	435, 824
BceAI	ACGGC	1 cut(s)	36
BcoDI	GTCTC	3 cut(s)	61, 629, 701
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	253
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	7 cut(s)	49, 248, 270, 339, 549, 744, 861
BlsI	GCNGC	7 cut(s)	50, 249, 271, 340, 550, 745, 862
BmgT120I	GGNCC	2 cut(s)	75, 267
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
Bpu10I	CCTNAGC	1 cut(s)	747
BsaJI	CCNNGG	4 cut(s)	43, 254, 373, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 183, 213, 293, 476, 675
Bse1I	ACTGG	1 cut(s)	789
BseDI	CCNNGG	4 cut(s)	43, 254, 373, 387
BseGI	GGATG	4 cut(s)	30, 167, 457, 835
BseLI	CCNNNNNNNGG	6 cut(s)	182, 183, 213, 293, 476, 675
BseMII	CTCAG	3 cut(s)	264, 738, 765
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	2 cut(s)	764, 791
BseXI	GCAGC	4 cut(s)	259, 350, 560, 847
BsgI	GTGCAG	2 cut(s)	567, 782
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	48, 76, 269, 743
BshNI	GGYRCC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	6 cut(s)	182, 183, 213, 293, 476, 675
BsmAI	GTCTC	3 cut(s)	61, 629, 701
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	48, 76, 269, 743
Bsp1407I	TGTACA	1 cut(s)	671
Bsp143I	GATC	3 cut(s)	124, 532, 883
Bsp19I	CCATGG	1 cut(s)	254
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	7 cut(s)	9, 49, 60, 207, 270, 327, 744
BspANI	GGCC	4 cut(s)	48, 76, 269, 743
BspCNI	CTCAG	3 cut(s)	265, 739, 766
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	4 cut(s)	43, 254, 373, 387
BssMI	GATC	3 cut(s)	124, 532, 883
BssT1I	CCWWGG	2 cut(s)	254, 387
Bst4CI	ACNGT	2 cut(s)	698, 712
Bst6I	CTCTTC	1 cut(s)	627
BstAUI	TGTACA	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	207, 364
BstDEI	CTNAG	4 cut(s)	121, 273, 747, 774
BstDSI	CCRYGG	2 cut(s)	254, 373
BstF5I	GGATG	4 cut(s)	30, 167, 457, 835
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 865
BstKTI	GATC	3 cut(s)	127, 535, 886
BstMAI	GTCTC	3 cut(s)	61, 629, 701
BstMBI	GATC	3 cut(s)	124, 532, 883
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 45, 82, 335, 344, 740, 879
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	259, 350, 560, 847
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	4 cut(s)	48, 76, 269, 743
BtgI	CCRYGG	2 cut(s)	254, 373
BtsCI	GGATG	4 cut(s)	30, 167, 457, 835
BtsIMutI	CAGTG	2 cut(s)	703, 717
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	207, 364
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	2 cut(s)	252, 865
Cfr13I	GGNCC	2 cut(s)	75, 267
Csp6I	GTAC	3 cut(s)	315, 421, 672
CspCI	CAANNNNNGTGG	4 cut(s)	355, 390, 679, 714
CviAII	CATG	3 cut(s)	255, 802, 874
CviQI	GTAC	3 cut(s)	315, 421, 672
DdeI	CTNAG	4 cut(s)	121, 273, 747, 774
DpnI	GATC	3 cut(s)	126, 534, 885
DpnII	GATC	3 cut(s)	124, 532, 883
DrdI	GACNNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	254, 387
Eco57I	CTGAAG	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	254, 387
ErhI	CCWWGG	2 cut(s)	254, 387
FaeI	CATG	3 cut(s)	258, 805, 877
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	254, 801, 873
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	7 cut(s)	49, 248, 270, 339, 549, 744, 861
FokI	GGATG	4 cut(s)	17, 154, 444, 842
Fsp4HI	GCNGC	7 cut(s)	49, 248, 270, 339, 549, 744, 861
FspI	TGCGCA	1 cut(s)	864
GlaI	GCGC	2 cut(s)	251, 864
GluI	GCNGC	7 cut(s)	49, 248, 270, 339, 549, 744, 861
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	4 cut(s)	48, 76, 269, 743
HhaI	GCGC	2 cut(s)	252, 865
Hin1II	CATG	3 cut(s)	258, 805, 877
Hin6I	GCGC	2 cut(s)	250, 863
HinP1I	GCGC	2 cut(s)	250, 863
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	7 cut(s)	149, 277, 297, 303, 433, 716, 817
HphI	GGTGA	2 cut(s)	121, 144
Hpy166II	GTNNAC	1 cut(s)	840
Hpy188III	TCNNGA	5 cut(s)	91, 104, 191, 281, 827
Hpy8I	GTNNAC	1 cut(s)	840
HpyAV	CCTTC	2 cut(s)	97, 328
HpyCH4III	ACNGT	2 cut(s)	698, 712
HpyCH4V	TGCA	3 cut(s)	548, 690, 763
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 45, 82, 335, 344, 740, 879
HpyF3I	CTNAG	4 cut(s)	121, 273, 747, 774
Hsp92II	CATG	3 cut(s)	258, 805, 877
HspAI	GCGC	2 cut(s)	250, 863
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	124, 532, 883
LmnI	GCTCC	2 cut(s)	778, 891
Lsp1109I	GCAGC	4 cut(s)	259, 350, 560, 847
LweI	GCATC	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	3 cut(s)	126, 534, 885
MboI	GATC	3 cut(s)	124, 532, 883
MboII	GAAGA	7 cut(s)	106, 206, 235, 344, 419, 644, 927
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	6 cut(s)	109, 394, 445, 481, 562, 612
MlyI	GAGTC	4 cut(s)	143, 306, 312, 427
MseI	TTAA	3 cut(s)	393, 585, 615
MspA1I	CMGCKG	3 cut(s)	272, 329, 746
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	7 cut(s)	20, 45, 82, 335, 344, 740, 879
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	3 cut(s)	124, 532, 883
NlaIII	CATG	3 cut(s)	258, 805, 877
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	928
NruI	TCGCGA	1 cut(s)	282
NsbI	TGCGCA	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	277, 716, 817
PkrI	GCNGC	7 cut(s)	50, 249, 271, 340, 550, 745, 862
PleI	GAGTC	4 cut(s)	143, 305, 311, 427
PpsI	GAGTC	4 cut(s)	143, 305, 311, 427
PshBI	ATTAAT	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	75, 267
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	282
RsaI	GTAC	3 cut(s)	316, 422, 673
RsaNI	GTAC	3 cut(s)	315, 421, 672
SaqAI	TTAA	3 cut(s)	393, 585, 615
SatI	GCNGC	7 cut(s)	49, 248, 270, 339, 549, 744, 861
Sau3AI	GATC	3 cut(s)	124, 532, 883
Sau96I	GGNCC	2 cut(s)	75, 267
SchI	GAGTC	4 cut(s)	143, 306, 312, 427
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	232
Sse9I	AATT	6 cut(s)	109, 394, 445, 481, 562, 612
SsiI	CCGC	7 cut(s)	9, 49, 60, 207, 270, 327, 744
StyI	CCWWGG	2 cut(s)	254, 387
TaaI	ACNGT	2 cut(s)	698, 712
TaqI	TCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	109, 394, 445, 481, 562, 612
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	3 cut(s)	51, 272, 746
TfiI	GAWTC	3 cut(s)	277, 716, 817
Tru1I	TTAA	3 cut(s)	393, 585, 615
Tru9I	TTAA	3 cut(s)	393, 585, 615
TscAI	CASTG	2 cut(s)	703, 717
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	4 cut(s)	247, 338, 548, 860
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	4 cut(s)	19, 420, 771, 818
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	703, 717
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	2 cut(s)	445, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.