Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

19515764 .. 19516922

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATCGATTTGATAGCCGGAGGTAAGAGCAAGAAGACGAAACGTACTGAGCCTAAATCCGACGATGTCTATCTCAAGCTCCTTGTCAAGGCGAACCGATATCTGGTGAGGAGAACAGAAAGCAAGTTCAATGCCGTGATTTTGAAGCGTTTGTTCATGAGCAAAGTGAACAAAGCGCCACTGTCTCTCTCTCGTCTGGTCCGATACATGGACGGAAAGGATGGAAAGATTGCTGTTATTGTTGGTACTGTGACTGATGATGTTAGAATCGAAGATGTTCCGGCTCTTACAGTTACTGCATTGAGGTTCACTGAGAGCGCTAGAGCTAGGATCCACAAGGCTGGTGGAGAGTGCCTCACTTTTGATCAGCTCGCTCTTCCGTGCCCCACTTGGTCAGAGAACACGGTTCTGCTTAGAGGTCCTAAGAACACACGTGAAGCAGTGAAGCACTTTGGACCAGCTCCTGGTGTGCCTCACAGCCACACCAAACCGTATGTACGTCAAACTGGTAAAAAAATTGAGATAGCAAGAGGAAGAAGAAGGAGCAGAGGTTTCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

10.52

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	2 - 186	2.9e-87	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	461
AclWI	GGATC	2 cut(s)	322, 335
AcvI	CACGTG	1 cut(s)	431
AfaI	GTAC	3 cut(s)	43, 244, 495
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	85, 100, 205, 461
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	127, 142, 553
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	4 cut(s)	76, 323, 367, 458
AluI	AGCT	4 cut(s)	76, 323, 367, 458
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	322, 335
AlwNI	CAGNNNCTG	2 cut(s)	293, 461
Aor51HI	AGCGCT	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	175, 317
AspS9I	GGNCC	3 cut(s)	196, 416, 452
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	3 cut(s)	196, 416, 452
BaeGI	GKGCMC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	318, 324
BfoI	RGCGCY	2 cut(s)	176, 318
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	3 cut(s)	196, 416, 452
BmgT120I	GGNCC	3 cut(s)	196, 416, 452
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	3
BsaAI	YACGTR	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	66
BsaXI	ACNNNNNCTCC	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 100, 205, 461
Bse1I	ACTGG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	3
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	85, 100, 205, 461
BseMII	CTCAG	2 cut(s)	36, 300
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	3
BsiSI	CCGG	2 cut(s)	15, 278
BslI	CCNNNNNNNGG	4 cut(s)	85, 100, 205, 461
BsmAI	GTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	327, 361
BspCNI	CTCAG	2 cut(s)	37, 301
BspDI	ATCGAT	1 cut(s)	3
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	322, 335
BspQI	GCTCTTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	508
BssMI	GATC	2 cut(s)	327, 361
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	5 cut(s)	180, 247, 289, 403, 489
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	45, 309, 410, 420
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	2 cut(s)	176, 318
BstHHI	GCGC	2 cut(s)	175, 317
BstKTI	GATC	2 cut(s)	330, 364
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	327, 361
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	327
Bsu15I	ATCGAT	1 cut(s)	3
BsuTUI	ATCGAT	1 cut(s)	3
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	176, 306, 444
Cac8I	GCNNGC	1 cut(s)	369
CaiI	CAGNNNCTG	2 cut(s)	293, 461
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	2 cut(s)	175, 317
Cfr13I	GGNCC	3 cut(s)	196, 416, 452
ClaI	ATCGAT	1 cut(s)	3
Csp6I	GTAC	3 cut(s)	42, 243, 494
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	154, 205
CviJI	RGCY	9 cut(s)	14, 49, 76, 281, 323, 338, 367, 458, 477
CviKI_1	RGCY	9 cut(s)	14, 49, 76, 281, 323, 338, 367, 458, 477
CviQI	GTAC	3 cut(s)	42, 243, 494
DdeI	CTNAG	4 cut(s)	45, 309, 410, 420
DpnI	GATC	2 cut(s)	329, 363
DpnII	GATC	2 cut(s)	327, 361
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	98
Eco47I	GGWCC	3 cut(s)	196, 416, 452
Eco47III	AGCGCT	1 cut(s)	316
Eco72I	CACGTG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	98
FaeI	CATG	2 cut(s)	157, 208
FaiI	YATR	3 cut(s)	155, 206, 492
FatI	CATG	2 cut(s)	153, 204
FbaI	TGATCA	1 cut(s)	361
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	2 cut(s)	318, 324
GlaI	GCGC	2 cut(s)	174, 316
HaeII	RGCGCY	2 cut(s)	176, 318
HapII	CCGG	2 cut(s)	15, 278
HhaI	GCGC	2 cut(s)	175, 317
Hin1II	CATG	2 cut(s)	157, 208
Hin6I	GCGC	2 cut(s)	173, 315
HinP1I	GCGC	2 cut(s)	173, 315
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	15, 278
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	166, 306
Hpy188I	TCNGA	3 cut(s)	58, 200, 394
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	166, 306
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	5 cut(s)	180, 247, 289, 403, 489
HpyCH4IV	ACGT	3 cut(s)	40, 430, 496
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	4 cut(s)	45, 309, 410, 420
HpySE526I	ACGT	3 cut(s)	40, 430, 496
Hsp92II	CATG	2 cut(s)	157, 208
HspAI	GCGC	2 cut(s)	173, 315
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	327, 361
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	81, 463, 540
LpnPI	CCDG	9 cut(s)	28, 86, 179, 291, 324, 447, 468, 474, 489
MaeI	CTAG	2 cut(s)	318, 324
MaeII	ACGT	3 cut(s)	40, 430, 496
MaeIII	GTNAC	2 cut(s)	247, 289
MalI	GATC	2 cut(s)	329, 363
MboI	GATC	2 cut(s)	327, 361
MboII	GAAGA	5 cut(s)	43, 281, 365, 543, 546
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	11, 99, 294, 362, 407, 480, 521, 539
MroXI	GAANNNNTTC	1 cut(s)	273
MspI	CCGG	2 cut(s)	15, 278
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	327, 361
NlaIII	CATG	2 cut(s)	157, 208
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	461
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	460
PspCI	CACGTG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	3 cut(s)	196, 416, 452
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	2 cut(s)	293, 461
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	3 cut(s)	43, 244, 495
RsaNI	GTAC	3 cut(s)	42, 243, 494
SapI	GCTCTTC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	327, 361
Sau96I	GGNCC	3 cut(s)	196, 416, 452
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	383
SinI	GGWCC	3 cut(s)	196, 416, 452
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	318, 324
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	5 cut(s)	180, 247, 289, 403, 489
TaiI	ACGT	3 cut(s)	43, 433, 499
TaqI	TCGA	2 cut(s)	3, 267
TasI	AATT	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	264
TscAI	CASTG	3 cut(s)	183, 313, 444
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	2 cut(s)	225, 366
TspRI	CASTG	3 cut(s)	183, 313, 444
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	3 cut(s)	196, 416, 452
XagI	CCTNNNNNAGG	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	318, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.