Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Forward (+)

9873067 .. 9874973

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCAAAAGGACTGCTCCTAAGTCCGATGATGTCTACCTAAAGCTTCTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATCTAACAGCAACTTCAATGCTGTGATTCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAGGATGACAAGATTGCTGTGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAGGTTACTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAAGCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAACACAGTTCTTCTTAGAGGACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

187

Amino Acids

20.97

Weight (kDa)

10.96

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	1 - 134	3.2e-67	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	106, 464
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	133, 556
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	7 cut(s)	82, 94, 179, 344, 373, 386, 527
AluI	AGCT	7 cut(s)	82, 94, 179, 344, 373, 386, 527
Alw21I	GWGCWC	1 cut(s)	388
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	419, 455
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	419, 455
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	4 cut(s)	195, 324, 330, 528
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	2 cut(s)	419, 455
BmgT120I	GGNCC	2 cut(s)	419, 455
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 464
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	106, 464
BseMII	CTCAG	2 cut(s)	306, 394
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	127, 171
Bsh1236I	CGCG	1 cut(s)	433
BshTI	ACCGGT	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	106, 464
BsmFI	GGGAC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	10, 116
BspCNI	CTCAG	2 cut(s)	307, 393
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	3 cut(s)	159, 210, 274
BspMI	ACCTGC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	99
BssMI	GATC	2 cut(s)	10, 116
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	406, 479
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	5 cut(s)	57, 315, 380, 413, 486
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	2 cut(s)	13, 119
BstMBI	GATC	2 cut(s)	10, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstUI	CGCG	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	255, 447
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	3 cut(s)	159, 210, 274
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	419, 455
ClaI	ATCGAT	1 cut(s)	9
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	4 cut(s)	160, 211, 275, 289
DdeI	CTNAG	5 cut(s)	57, 315, 380, 413, 486
DpnI	GATC	2 cut(s)	12, 118
DpnII	GATC	2 cut(s)	10, 116
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	419, 455
Eco53kI	GAGCTC	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	4 cut(s)	163, 214, 278, 292
FaiI	YATR	7 cut(s)	161, 212, 276, 290, 493, 495, 504
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	4 cut(s)	159, 210, 274, 288
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	4 cut(s)	195, 324, 330, 528
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	4 cut(s)	163, 214, 278, 292
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	80, 92
HinfI	GANTC	4 cut(s)	142, 280, 544, 552
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	3 cut(s)	73, 172, 312
Hpy188I	TCNGA	4 cut(s)	64, 147, 383, 455
Hpy188III	TCNNGA	3 cut(s)	160, 211, 275
Hpy8I	GTNNAC	3 cut(s)	73, 172, 312
HpyAV	CCTTC	2 cut(s)	286, 504
HpyCH4III	ACNGT	2 cut(s)	406, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	5 cut(s)	57, 315, 380, 413, 486
Hsp92II	CATG	4 cut(s)	163, 214, 278, 292
Kzo9I	GATC	2 cut(s)	10, 116
LmnI	GCTCC	4 cut(s)	58, 184, 391, 466
LpnPI	CCDG	9 cut(s)	6, 113, 201, 297, 330, 383, 450, 471, 477
MaeI	CTAG	4 cut(s)	195, 324, 330, 528
MaeIII	GTNAC	2 cut(s)	295, 479
MalI	GATC	2 cut(s)	12, 118
MboI	GATC	2 cut(s)	10, 116
MboII	GAAGA	2 cut(s)	49, 401
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	17, 105, 192, 300, 312, 410, 524
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	359
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	10, 116
NlaIII	CATG	4 cut(s)	163, 214, 278, 292
PagI	TCATGA	3 cut(s)	159, 210, 274
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	142, 280, 552
PinAI	ACCGGT	1 cut(s)	99
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	419, 455
PsuI	RGATCY	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	10, 116
Sau96I	GGNCC	2 cut(s)	419, 455
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	419, 455
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	1 cut(s)	333
SspMI	CTAG	4 cut(s)	195, 324, 330, 528
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	406, 479
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	142, 280, 552
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	2 cut(s)	262, 447
TspDTI	ATGAA	4 cut(s)	148, 199, 263, 305
TspRI	CASTG	2 cut(s)	262, 447
VpaK11BI	GGWCC	2 cut(s)	419, 455
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	4 cut(s)	195, 324, 330, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.