Rh6CG140600

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007242
Physical Location & Seq
Forward (+)
18174291 .. 18174839
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG140600.1

Sequence Viewer

Length: 549 bp
ATGGGTATCGATTTGGTCGCCGGCGGCAAGAGCAAGAACACCAAGCGTACATCGACTAGGTCTGAGGATATCTACCTCAAGCTCACAGTCAAGCTCTATGATTTCATCCACCGAAGGACCAAGAGTCATTTCAGCAAGGTGATTCGTCACAGGCTTTGCATGAGCAAGGTCAACAAGGCCCCTCTCTCGCTTTCCCGATTGATTCGGTATATGCAGGGCCATGAGGATAAGATTGCTGTGCTCGTCGGAACTGTCATGGACGATGTTCTCGTCGCCGAAGTCACTGCTCTCAGGTTCACCGAGAGGGCTAGGGCTCGCATTGAGAAGGCTGGTAGAGAGTGCTTGACTTTTGACCAATTGGCTCTTAGAGCTCCTCTTGGCCAAAACACGATGCTTCTGAGAGGACCAAAGAATGCCCGTGAAGCTGTGAAGCATTTTGGTCCAGCACCTGGTGTCCCACACAGCCACACCAAGCCATATGTGCGATCAAAGGGCAGGAAATTCGAGAAGGCCAGAGGAAAAAGGAACAGCCGTGGTTTCCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18

Protein Analysis

182

Amino Acids

20.65

Weight (kDa)

11.0

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18 PF17135 2 - 182 6.9e-79 Ribosomal protein 60S L18 and 50S L18e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 452
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 449
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 82, 94, 371, 425
AluI AGCT 4 cut(s) 82, 94, 371, 425
Alw21I GWGCWC 2 cut(s) 243, 373
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 4 cut(s) 177, 217, 379, 510
ApoI RAATTY 1 cut(s) 500
AspS9I GGNCC 5 cut(s) 117, 178, 217, 404, 440
AsuHPI GGTGA 2 cut(s) 151, 289
AvaII GGWCC 3 cut(s) 117, 404, 440
BalI TGGCCA 1 cut(s) 381
BanII GRGCYC 2 cut(s) 316, 373
Bbv12I GWGCWC 2 cut(s) 243, 373
BceAI ACGGC 1 cut(s) 516
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 484, 518
BciT130I CCWGG 1 cut(s) 450
BfaI CTAG 2 cut(s) 57, 309
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 3 cut(s) 117, 404, 440
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 5 cut(s) 117, 178, 217, 404, 440
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 532
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 20
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 532
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 3 cut(s) 54, 304, 389
BseRI GAGGAG 1 cut(s) 363
BshFI GGCC 4 cut(s) 179, 219, 381, 512
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 243, 373
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 4 cut(s) 179, 219, 381, 512
Bsp1286I GDGCHC 3 cut(s) 243, 316, 373
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 1 cut(s) 24
BspANI GGCC 4 cut(s) 179, 219, 381, 512
BspCNI CTCAG 3 cut(s) 55, 303, 390
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 88, 253
BstC8I GCNNGC 2 cut(s) 22, 316
BstDEI CTNAG 4 cut(s) 63, 290, 365, 398
BstDSI CCRYGG 1 cut(s) 532
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 1 cut(s) 488
BstMBI GATC 1 cut(s) 485
BstMWI GCNNNNNNNGC 4 cut(s) 30, 368, 422, 481
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 4 cut(s) 179, 219, 381, 512
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 532
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 22, 316
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 117, 178, 217, 404, 440
ClaI ATCGAT 1 cut(s) 9
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 1 cut(s) 48
CviAII CATG 3 cut(s) 160, 221, 256
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 4 cut(s) 63, 290, 365, 398
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
DraIII CACNNNGTG 1 cut(s) 452
DriI GACNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 379
Eam1105I GACNNNNNGTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 316, 373
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 117, 404, 440
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 448
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 316, 373
FaeI CATG 3 cut(s) 163, 224, 259
FaiI YATR 8 cut(s) 99, 161, 210, 212, 222, 257, 478, 480
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 159, 220, 255
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 316, 373
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 57, 309
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 4 cut(s) 179, 219, 381, 512
HapII CCGG 1 cut(s) 21
Hin1II CATG 3 cut(s) 163, 224, 259
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 124, 142, 202
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 151, 289
Hpy166II GTNNAC 2 cut(s) 172, 297
Hpy188I TCNGA 3 cut(s) 64, 248, 399
Hpy188III TCNNGA 2 cut(s) 195, 505
Hpy8I GTNNAC 2 cut(s) 172, 297
Hpy99I CGWCG 2 cut(s) 248, 275
HpyAV CCTTC 3 cut(s) 108, 319, 502
HpyCH4III ACNGT 2 cut(s) 88, 253
HpyCH4V TGCA 2 cut(s) 159, 214
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 368, 422, 481
HpyF3I CTNAG 4 cut(s) 63, 290, 365, 398
Hsp92II CATG 3 cut(s) 163, 224, 259
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 485
LmnI GCTCC 1 cut(s) 376
LweI GCATC 1 cut(s) 381
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 2 cut(s) 57, 309
MaeIII GTNAC 2 cut(s) 146, 280
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 3 cut(s) 243, 316, 373
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 2 cut(s) 356, 500
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 8 cut(s) 58, 86, 192, 217, 297, 384, 395, 509
Mox20I TGGCCA 1 cut(s) 381
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MscI TGGCCA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 4 cut(s) 30, 368, 422, 481
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 485
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 3 cut(s) 163, 224, 259
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 146, 280
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 142, 202
PflFI GACNNNGTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 5 cut(s) 117, 178, 217, 404, 440
PstNI CAGNNNCTG 1 cut(s) 449
PsyI GACNNNGTC 1 cut(s) 58
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 373
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 5 cut(s) 117, 178, 217, 404, 440
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 3 cut(s) 243, 316, 373
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 1 cut(s) 381
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 3 cut(s) 117, 404, 440
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 356, 500
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 57, 309
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 88, 253
TaqI TCGA 3 cut(s) 9, 53, 504
TasI AATT 2 cut(s) 356, 500
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 142, 202
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 146, 280
Tsp45I GTSAC 2 cut(s) 146, 280
TspDTI ATGAA 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 3 cut(s) 117, 404, 440
XapI RAATTY 1 cut(s) 500
XspI CTAG 2 cut(s) 57, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.