Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

42191881 .. 42193939

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1307900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTATCGATTTGGTCGCCGGTGGCAAGAGCAAGAAGACCAAACGGACAGCCCCAAAGTCCGACGATATCTACCTCAAGCTCCTCGTCAAGCTGTATCGGTTTCTGGTGAGGAGGACCGGCAGCAAGTTCAATGCCGTGATTCTGAAGAGGTTGTTCATGAGCAAGGTGAACAAGGCCCCTCTGTCCCTTTCCCGATTGATTAAGTACATGACCGGAAAGGAGGGTAAGATTGCTGTGGTGGTCGGGACTGTGACCGATGACATTCGGGTTTACGAAGTTCCTTGTTTGAAAGTGACCGCTCTCAGGTTCACCGAGACCGCCAGGGCTCGGATTGAGAAGGCCGGCGGCGAGTGCTTGACTTTCGACCAGCTGGCTCTCAGAGCTCCTCTTGGCCAGAACACGATTCTTCTTAGAGGACCTAAGAATGCTCGTGAAGCTGTGAAGCATTTTGGACCTGCTCCTGGTGTTCCACACAGCCACACCAAACCCTATGTGCGATCAAAGGGCAGGAAGTTCGAGAAGGCCAGAGGAAAGAGAAACAGCAAGGGTTTCCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

188

Amino Acids

20.82

Weight (kDa)

10.79

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	2 - 187	5.8e-95	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	302
AciI	CCGC	3 cut(s)	300, 321, 348
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	306, 330, 464
AgsI	TTSAA	2 cut(s)	133, 292
AjnI	CCWGG	2 cut(s)	323, 463
AluBI	AGCT	5 cut(s)	82, 94, 373, 386, 440
AluI	AGCT	5 cut(s)	82, 94, 373, 386, 440
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	311
AoxI	GGCC	4 cut(s)	177, 342, 394, 525
ApeKI	GCWGC	1 cut(s)	123
AspS9I	GGNCC	4 cut(s)	117, 178, 419, 455
AsuHPI	GGTGA	3 cut(s)	121, 181, 304
AvaII	GGWCC	3 cut(s)	117, 419, 455
BalI	TGGCCA	1 cut(s)	396
BanII	GRGCYC	2 cut(s)	331, 388
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	2 cut(s)	325, 465
BcoDI	GTCTC	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	2 cut(s)	124, 349
BlsI	GCNGC	2 cut(s)	125, 350
Bme1390I	CCNGG	2 cut(s)	325, 465
Bme18I	GGWCC	3 cut(s)	117, 419, 455
BmgT120I	GGNCC	4 cut(s)	117, 178, 419, 455
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	325, 465
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 330, 464
Bse118I	RCCGGY	3 cut(s)	20, 119, 344
BseBI	CCWGG	2 cut(s)	325, 465
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	306, 330, 464
BseMII	CTCAG	2 cut(s)	319, 394
BseRI	GAGGAG	3 cut(s)	74, 127, 378
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	4 cut(s)	179, 344, 396, 527
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	4 cut(s)	21, 120, 216, 345
BslFI	GGGAC	2 cut(s)	172, 262
BslI	CCNNNNNNNGG	3 cut(s)	306, 330, 464
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	172, 262
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	179, 344, 396, 527
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	331, 388
Bsp143I	GATC	1 cut(s)	500
BspACI	CCGC	3 cut(s)	300, 321, 348
BspANI	GGCC	4 cut(s)	179, 344, 396, 527
BspCNI	CTCAG	2 cut(s)	318, 393
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	302
BsrFI	RCCGGY	3 cut(s)	20, 119, 344
BssAI	RCCGGY	3 cut(s)	20, 119, 344
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	500
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	325, 465
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	346, 375
BstDEI	CTNAG	4 cut(s)	305, 380, 413, 423
BstKTI	GATC	1 cut(s)	503
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	3 cut(s)	354, 383, 437
BstNI	CCWGG	2 cut(s)	325, 465
BstSCI	CCNGG	2 cut(s)	323, 463
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	4 cut(s)	179, 344, 396, 527
BsuTUI	ATCGAT	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	346, 375
CciI	TCATGA	1 cut(s)	159
Cfr10I	RCCGGY	3 cut(s)	20, 119, 344
Cfr13I	GGNCC	4 cut(s)	117, 178, 419, 455
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	160, 211
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	305, 380, 413, 423
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	331, 388
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	3 cut(s)	117, 419, 455
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	2 cut(s)	178, 419
EcoRII	CCWGG	2 cut(s)	323, 463
EcoRV	GATATC	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	331, 388
FaeI	CATG	2 cut(s)	163, 214
FaiI	YATR	3 cut(s)	161, 212, 495
FaqI	GGGAC	2 cut(s)	172, 262
FatI	CATG	2 cut(s)	159, 210
Fnu4HI	GCNGC	2 cut(s)	124, 349
FriOI	GRGCYC	2 cut(s)	331, 388
Fsp4HI	GCNGC	2 cut(s)	124, 349
GluI	GCNGC	2 cut(s)	124, 349
HaeIII	GGCC	4 cut(s)	179, 344, 396, 527
HapII	CCGG	4 cut(s)	21, 120, 216, 345
Hin1II	CATG	2 cut(s)	163, 214
HinfI	GANTC	2 cut(s)	142, 406
HpaII	CCGG	4 cut(s)	21, 120, 216, 345
HphI	GGTGA	3 cut(s)	121, 181, 304
Hpy166II	GTNNAC	3 cut(s)	172, 274, 312
Hpy188I	TCNGA	4 cut(s)	64, 147, 333, 383
Hpy188III	TCNNGA	5 cut(s)	160, 195, 247, 434, 520
Hpy8I	GTNNAC	3 cut(s)	172, 274, 312
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	334, 517
HpyCH4III	ACNGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	354, 383, 437
HpyF3I	CTNAG	4 cut(s)	305, 380, 413, 423
Hsp92II	CATG	2 cut(s)	163, 214
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	3 cut(s)	87, 391, 466
Lsp1109I	GCAGC	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	253, 295
MalI	GATC	1 cut(s)	502
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	500
MboII	GAAGA	3 cut(s)	49, 160, 401
MhlI	GDGCHC	2 cut(s)	331, 388
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	87
Mox20I	TGGCCA	1 cut(s)	396
MroNI	GCCGGC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	204, 562
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	4 cut(s)	21, 120, 216, 345
MspR9I	CCNGG	2 cut(s)	325, 465
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	325, 465
MwoI	GCNNNNNNNGC	3 cut(s)	354, 383, 437
NaeI	GCCGGC	1 cut(s)	346
NdeII	GATC	1 cut(s)	500
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	163, 214
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	253, 295
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	433
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	142, 406
PkrI	GCNGC	2 cut(s)	125, 350
PpuMI	RGGWCCY	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	323, 463
PspGI	CCWGG	2 cut(s)	323, 463
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	4 cut(s)	117, 178, 419, 455
PspPPI	RGGWCCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	204, 562
SatI	GCNGC	2 cut(s)	124, 349
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	4 cut(s)	117, 178, 419, 455
ScrFI	CCNGG	2 cut(s)	325, 465
SduI	GDGCHC	2 cut(s)	331, 388
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	3 cut(s)	117, 419, 455
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	3 cut(s)	300, 321, 348
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	323, 463
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	9, 366, 519
TaqII	GACCGA	1 cut(s)	272
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	142, 406
Tru1I	TTAA	2 cut(s)	204, 562
Tru9I	TTAA	2 cut(s)	204, 562
TseFI	GTSAC	2 cut(s)	253, 295
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	253, 295
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	2 cut(s)	61, 545
VpaK11BI	GGWCC	3 cut(s)	117, 419, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.