Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Forward (+)

1621355 .. 1623052

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCTCAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGGTGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGTTCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

10.97

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	2 - 187	1.1e-92	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	427
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	106, 403, 464, 510
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	133, 148, 556
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	7 cut(s)	53, 82, 94, 179, 344, 373, 386
AluI	AGCT	7 cut(s)	53, 82, 94, 179, 344, 373, 386
Alw21I	GWGCWC	1 cut(s)	388
AoxI	GGCC	3 cut(s)	394, 501, 525
ApoI	RAATTY	1 cut(s)	427
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	4 cut(s)	394, 419, 455, 501
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	419, 455
BanII	GRGCYC	2 cut(s)	331, 388
BauI	CACGAG	1 cut(s)	275
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	2 cut(s)	419, 455
BmgT120I	GGNCC	4 cut(s)	394, 419, 455, 501
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	62, 325
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 403, 464, 510
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	106, 403, 464, 510
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	396, 503, 527
BshTI	ACCGGT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	21, 100
BslI	CCNNNNNNNGG	4 cut(s)	106, 403, 464, 510
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	396, 503, 527
Bsp1286I	GDGCHC	2 cut(s)	331, 388
Bsp143I	GATC	2 cut(s)	10, 15
BspANI	GGCC	3 cut(s)	396, 503, 527
BspCNI	CTCAG	1 cut(s)	393
BspHI	TCATGA	2 cut(s)	159, 210
BspMI	ACCTGC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	10, 15
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	88, 406, 479
Bst6I	CTCTTC	2 cut(s)	143, 536
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	331, 375
BstDEI	CTNAG	3 cut(s)	380, 413, 423
BstKTI	GATC	2 cut(s)	13, 18
BstMBI	GATC	2 cut(s)	10, 15
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	396, 503, 527
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	331, 375
CciI	TCATGA	2 cut(s)	159, 210
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	4 cut(s)	394, 419, 455, 501
Csp6I	GTAC	1 cut(s)	272
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	3 cut(s)	160, 211, 289
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	3 cut(s)	380, 413, 423
DpnI	GATC	2 cut(s)	12, 17
DpnII	GATC	2 cut(s)	10, 15
Eam1104I	CTCTTC	2 cut(s)	143, 536
EarI	CTCTTC	2 cut(s)	143, 536
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	331, 388
Eco47I	GGWCC	2 cut(s)	419, 455
Eco53kI	GAGCTC	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	331, 388
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	163, 214, 292
FaiI	YATR	6 cut(s)	161, 212, 254, 290, 493, 495
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	3 cut(s)	159, 210, 288
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	72
FriOI	GRGCYC	2 cut(s)	331, 388
FspBI	CTAG	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	396, 503, 527
HapII	CCGG	2 cut(s)	21, 100
Hin1II	CATG	3 cut(s)	163, 214, 292
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	80, 92
HinfI	GANTC	3 cut(s)	280, 544, 552
HpaII	CCGG	2 cut(s)	21, 100
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	4 cut(s)	73, 172, 274, 312
Hpy188I	TCNGA	4 cut(s)	15, 64, 383, 455
Hpy188III	TCNNGA	3 cut(s)	160, 211, 520
Hpy8I	GTNNAC	4 cut(s)	73, 172, 274, 312
HpyAV	CCTTC	2 cut(s)	504, 517
HpyCH4III	ACNGT	3 cut(s)	88, 406, 479
HpyCH4IV	ACGT	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	380, 413, 423
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	163, 214, 292
Kzo9I	GATC	2 cut(s)	10, 15
LmnI	GCTCC	4 cut(s)	58, 184, 391, 466
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	295, 479
MalI	GATC	2 cut(s)	12, 17
MboI	GATC	2 cut(s)	10, 15
MboII	GAAGA	5 cut(s)	49, 160, 236, 401, 553
MhlI	GDGCHC	2 cut(s)	331, 388
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	359, 562
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	21, 100
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	10, 15
NlaIII	CATG	3 cut(s)	163, 214, 292
NmuCI	GTSAC	2 cut(s)	295, 479
PagI	TCATGA	2 cut(s)	159, 210
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	280, 552
PinAI	ACCGGT	1 cut(s)	99
PleI	GAGTC	1 cut(s)	552
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	552
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	463
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	394, 419, 455, 501
PspPPI	RGGWCCY	1 cut(s)	419
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	359, 562
Sau3AI	GATC	2 cut(s)	10, 15
Sau96I	GGNCC	4 cut(s)	394, 419, 455, 501
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	2 cut(s)	331, 388
SinI	GGWCC	2 cut(s)	419, 455
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	77, 304
SmoI	CTYRAG	2 cut(s)	77, 304
Sse9I	AATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	88, 406, 479
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	519
TasI	AATT	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	280, 552
Tru1I	TTAA	2 cut(s)	359, 562
Tru9I	TTAA	2 cut(s)	359, 562
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	295, 479
Tsp45I	GTSAC	2 cut(s)	295, 479
TspDTI	ATGAA	3 cut(s)	148, 199, 305
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	419, 455
XapI	RAATTY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.