Rh6AG355200

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007242
Physical Location & Seq
Forward (+)
55504641 .. 55507389
2749 bp
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UTR
Exon/CDS
Intron
Rh6AG355200.1

Sequence Viewer

Length: 405 bp
ATGAGCAAGGTCAACAAGGCCCCTCTCTCGCTTTCCCGATTGATTCGGTATATGCAGGGCCATGAGGATAAGATTGCTGTGCTCGTCGGAACTGTCACCGACGATGTTCGCGTCGCCGAAGTCCCTGCTCTTAAGGTCACTGCTCTCAGGTTCACCGAAAGGGCTAGGGCTCGCATTGAGAAGGCTGGTGGAGAGTGCTTGACTTTCGACCAATTGGCTCTTAGAGCTCCTCTTGGCCAGAACACGATGCTTCTGAGAGGACCAAAGAATGCCCGTGAAGCTGTGAAGCATTTCGGTCCAGCACCTGGTGTCCCACACAGCCACACCAAGCCATATGTGCGATCAAAGGGCAGGAAATTCGAGAAGGCCAGAGGAAAAAGGAACAGCCGTGGTTTCCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

11.14

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18 PF17135 1 - 134 2.3e-68 Ribosomal protein 60S L18 and 50S L18e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccII CGCG 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 305
AflII CTTAAG 1 cut(s) 131
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 227, 281
AluI AGCT 2 cut(s) 227, 281
Alw21I GWGCWC 2 cut(s) 84, 229
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 4 cut(s) 18, 58, 235, 366
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 290
AspS9I GGNCC 4 cut(s) 19, 58, 260, 296
AsuHPI GGTGA 2 cut(s) 88, 145
AvaII GGWCC 2 cut(s) 260, 296
BalI TGGCCA 1 cut(s) 237
BanII GRGCYC 2 cut(s) 172, 229
Bbv12I GWGCWC 2 cut(s) 84, 229
BceAI ACGGC 1 cut(s) 372
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 340, 374
BciT130I CCWGG 1 cut(s) 306
BfaI CTAG 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 2 cut(s) 260, 296
BmgT120I GGNCC 4 cut(s) 19, 58, 260, 296
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 388
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 2 cut(s) 160, 245
BseRI GAGGAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 4 cut(s) 20, 60, 237, 368
BsiHKAI GWGCWC 2 cut(s) 84, 229
BslFI GGGAC 2 cut(s) 107, 296
BslI CCNNNNNNNGG 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 107, 296
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 4 cut(s) 20, 60, 237, 368
Bsp1286I GDGCHC 3 cut(s) 84, 172, 229
Bsp143I GATC 1 cut(s) 341
BspANI GGCC 4 cut(s) 20, 60, 237, 368
BspCNI CTCAG 2 cut(s) 159, 246
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 146, 221, 254
BstDSI CCRYGG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 3 cut(s) 224, 278, 337
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 111
BsuRI GGCC 4 cut(s) 20, 60, 237, 368
BtgI CCRYGG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 4 cut(s) 19, 58, 260, 296
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 304
CviAII CATG 1 cut(s) 62
DdeI CTNAG 3 cut(s) 146, 221, 254
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 172, 229
Eco47I GGWCC 2 cut(s) 260, 296
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 172, 229
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 51, 53, 63, 334, 336
FaqI GGGAC 2 cut(s) 107, 296
FatI CATG 1 cut(s) 61
FauNDI CATATG 1 cut(s) 334
FriOI GRGCYC 2 cut(s) 172, 229
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 4 cut(s) 20, 60, 237, 368
HgaI GACGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 43
HphI GGTGA 2 cut(s) 88, 145
Hpy166II GTNNAC 2 cut(s) 13, 153
Hpy188I TCNGA 2 cut(s) 89, 255
Hpy188III TCNNGA 2 cut(s) 36, 361
Hpy8I GTNNAC 2 cut(s) 13, 153
Hpy99I CGWCG 3 cut(s) 89, 104, 116
HpyAV CCTTC 2 cut(s) 175, 358
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 278, 337
HpyF3I CTNAG 3 cut(s) 146, 221, 254
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 232
LweI GCATC 1 cut(s) 237
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 94, 136
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 3 cut(s) 84, 172, 229
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 2 cut(s) 212, 356
MluNI TGGCCA 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 5 cut(s) 33, 58, 240, 251, 365
Mox20I TGGCCA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 290
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 224, 278, 337
NdeI CATATG 1 cut(s) 334
NdeII GATC 1 cut(s) 341
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 94, 136
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 4 cut(s) 19, 58, 260, 296
PstNI CAGNNNCTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 4 cut(s) 19, 58, 260, 296
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 3 cut(s) 84, 172, 229
SetI ASST 6 cut(s) 12, 138, 152, 229, 283, 307
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 1 cut(s) 237
SinI GGWCC 2 cut(s) 260, 296
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 212, 356
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 207, 360
TaqII GACCGA 1 cut(s) 284
TasI AATT 2 cut(s) 212, 356
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 94, 136
Tsp45I GTSAC 2 cut(s) 94, 136
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 305
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 260, 296
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.