Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Forward (+)

22148832 .. 22150866

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTATCGATTTGGTCGCCGGTGGCAAGAGCAAGAAGACAAAGCGCACAGCGCCCAAGTCCGATGATATCTACCTCAAGCTCCTCGTGAAGCTGTATCGGTTTCTTGTAAGGAGGACTGGGAGTAAGTTCAGTGCGGTGATTTTGAAGAGGCTGTTCATGAGCAAGGTGAACAAGGCCCCTCTCTCCCTTTCCAGATTGATTCGTTACATGAACGGGAAGGATGGTAAGATCGCTGTGGTCGTCGGGACTGTGACAGACGACATTCGAGTTTATGAAGTACCTGCTCTGAAAGTGACTGCTCTTAGGTTCACTGAAACCGCCAGGGCTCGGATTGAGAAGGCTGGTGGAGAGTGCTTGACTTTTGACCAGCTGGCTCTCAGGGCCCCTCTTGGCCAGAACACGGTTCTTCTCAGAGGACCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGACCTGCTCCTGGTGTGCCTCACAGTCACACCAAACCCTATGTACGATCAAAGGGTAGGAAATTTGAGAAGGCTAGAGGCAAAAGGAACAGCAAGGGTTTCCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

188

Amino Acids

20.78

Weight (kDa)

10.98

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	292, 466
AciI	CCGC	2 cut(s)	137, 321
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	515
AfaI	GTAC	2 cut(s)	282, 498
AfiI	CCNNNNNNNGG	3 cut(s)	330, 403, 464
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	323, 463
AluBI	AGCT	4 cut(s)	82, 94, 373, 440
AluI	AGCT	4 cut(s)	82, 94, 373, 440
AoxI	GGCC	3 cut(s)	177, 384, 394
ApaI	GGGCCC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	48, 55
AspS9I	GGNCC	5 cut(s)	178, 384, 385, 419, 455
AsuHPI	GGTGA	2 cut(s)	151, 181
AvaII	GGWCC	2 cut(s)	419, 455
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	396
BanII	GRGCYC	2 cut(s)	331, 388
BauI	CACGAG	2 cut(s)	86, 432
BbsI	GAAGAC	1 cut(s)	44
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	325, 465
BfaI	CTAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	2 cut(s)	292, 466
Bme1390I	CCNGG	2 cut(s)	325, 465
Bme18I	GGWCC	2 cut(s)	419, 455
BmgT120I	GGNCC	5 cut(s)	178, 384, 385, 419, 455
BmiI	GGNNCC	3 cut(s)	180, 386, 387
BmrFI	CCNGG	2 cut(s)	325, 465
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 403, 464
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	325, 465
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	330, 403, 464
BseMII	CTCAG	2 cut(s)	394, 427
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	388
BshFI	GGCC	3 cut(s)	179, 386, 396
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	330, 403, 464
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	179, 386, 396
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	331, 388
Bsp143I	GATC	2 cut(s)	231, 500
BspACI	CCGC	2 cut(s)	137, 321
BspANI	GGCC	3 cut(s)	179, 386, 396
BspCNI	CTCAG	2 cut(s)	393, 426
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	180, 386, 387
BspMI	ACCTGC	2 cut(s)	292, 466
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	231, 500
BssSI	CACGAG	2 cut(s)	86, 432
Bst2BI	CACGAG	2 cut(s)	86, 432
Bst2UI	CCWGG	2 cut(s)	325, 465
Bst4CI	ACNGT	3 cut(s)	253, 406, 479
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	305, 380, 413
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	48, 55
BstKTI	GATC	2 cut(s)	234, 503
BstMBI	GATC	2 cut(s)	231, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
BstNI	CCWGG	2 cut(s)	325, 465
BstSCI	CCNGG	2 cut(s)	323, 463
BstSLI	GKGCMC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	179, 386, 396
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	139, 312
BveI	ACCTGC	2 cut(s)	292, 466
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	48, 55
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	5 cut(s)	178, 384, 385, 419, 455
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	281, 497
CviAII	CATG	2 cut(s)	160, 211
CviQI	GTAC	2 cut(s)	281, 497
DdeI	CTNAG	3 cut(s)	305, 380, 413
DpnI	GATC	2 cut(s)	233, 502
DpnII	GATC	2 cut(s)	231, 500
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco24I	GRGCYC	2 cut(s)	331, 388
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	419, 455
EcoO109I	RGGNCCY	3 cut(s)	178, 384, 385
EcoRII	CCWGG	2 cut(s)	323, 463
EcoRV	GATATC	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	331, 388
FaeI	CATG	2 cut(s)	163, 214
FaiI	YATR	4 cut(s)	161, 212, 276, 495
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	159, 210
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	331, 388
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	47, 54
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	179, 386, 396
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	2 cut(s)	48, 55
Hin1II	CATG	2 cut(s)	163, 214
Hin6I	GCGC	2 cut(s)	46, 53
HinP1I	GCGC	2 cut(s)	46, 53
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	151, 181
Hpy166II	GTNNAC	2 cut(s)	172, 312
Hpy188I	TCNGA	4 cut(s)	64, 291, 333, 416
Hpy188III	TCNNGA	5 cut(s)	88, 160, 195, 247, 434
Hpy8I	GTNNAC	2 cut(s)	172, 312
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	3 cut(s)	214, 334, 517
HpyCH4III	ACNGT	3 cut(s)	253, 406, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
HpyF3I	CTNAG	3 cut(s)	305, 380, 413
Hsp92II	CATG	2 cut(s)	163, 214
HspAI	GCGC	2 cut(s)	46, 53
Kzo9I	GATC	2 cut(s)	231, 500
LmnI	GCTCC	2 cut(s)	87, 466
MaeI	CTAG	1 cut(s)	528
MaeIII	GTNAC	4 cut(s)	206, 253, 295, 479
MalI	GATC	2 cut(s)	233, 502
MboI	GATC	2 cut(s)	231, 500
MboII	GAAGA	3 cut(s)	49, 160, 401
MhlI	GDGCHC	2 cut(s)	331, 388
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	1 cut(s)	515
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	9 cut(s)	86, 95, 108, 144, 192, 399, 410, 483, 524
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	1 cut(s)	562
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	325, 465
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	325, 465
MwoI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
NdeII	GATC	2 cut(s)	231, 500
NlaIII	CATG	2 cut(s)	163, 214
NlaIV	GGNNCC	3 cut(s)	180, 386, 387
NmuCI	GTSAC	3 cut(s)	253, 295, 479
PagI	TCATGA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	323, 463
PspGI	CCWGG	2 cut(s)	323, 463
PspN4I	GGNNCC	3 cut(s)	180, 386, 387
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	5 cut(s)	178, 384, 385, 419, 455
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	282, 498
RsaNI	GTAC	2 cut(s)	281, 497
SaqAI	TTAA	1 cut(s)	562
Sau3AI	GATC	2 cut(s)	231, 500
Sau96I	GGNCC	5 cut(s)	178, 384, 385, 419, 455
ScrFI	CCNGG	2 cut(s)	325, 465
SduI	GDGCHC	2 cut(s)	331, 388
SetI	ASST	9 cut(s)	78, 84, 96, 171, 286, 311, 375, 442, 460
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	419, 455
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	515
SsiI	CCGC	2 cut(s)	137, 321
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	323, 463
TaaI	ACNGT	3 cut(s)	253, 406, 479
TaqI	TCGA	2 cut(s)	9, 268
TasI	AATT	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	562
Tru9I	TTAA	1 cut(s)	562
TscAI	CASTG	2 cut(s)	139, 319
TseFI	GTSAC	3 cut(s)	253, 295, 479
Tsp45I	GTSAC	3 cut(s)	253, 295, 479
TspDTI	ATGAA	3 cut(s)	148, 227, 291
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	139, 319
VpaK11BI	GGWCC	2 cut(s)	419, 455
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.