Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

28274801 .. 28277125

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTATCGATCTTGTTGCAGGAGGTAAGAGCAAGAAGACCAAGCGCACTGCGCCCAAGTCCGATGATATTTATCTCAAGCTTCTCGTCAAGCTCTACCGCTTTCTTGTCCGGAGAACTGGAAGCAAGTTCAATGCGGTCATTCTCAAACGTCTCTTCATGAGCAAAGTCAACAAGGCACCACTTTCTCTCTCAAGGTTGATTCGTTATATGCAAGGAAAGGACAACAAGATTGCTGTGGTTGTGGGGACTGTGACAGATGATATTCGCGTTTATGAAGTTCCTCAATTGAAGGTTACAGCACTCAGATTTACTGAGACTGCAAGGGCCAGGATTGAGAAGGCAGGAGGAGAGTGCCTAACATTTGATCAGCTTGCATTGAGGGCACCATTGGGTCAGAATGTGGTTCTCCTCAGAGGACCAAAGAATGCACGTGAAGCAGTGAAACACTTTGGTCCAGCACCTGGTGTGCCACACAGTCACACCAAACCTTATGTCCGATCGAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGAAACAGCAAGGGATTTAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

10.98

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	178, 385
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccII	CGCG	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	2 cut(s)	100, 137
AcvI	CACGTG	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	464, 505
AgsI	TTSAA	2 cut(s)	133, 292
AjnI	CCWGG	2 cut(s)	329, 463
AluBI	AGCT	3 cut(s)	82, 94, 373
AluI	AGCT	3 cut(s)	82, 94, 373
Alw26I	GTCTC	2 cut(s)	158, 311
AlwNI	CAGNNNCTG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	327
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AspLEI	GCGC	2 cut(s)	48, 55
AspS9I	GGNCC	3 cut(s)	327, 419, 455
AvaII	GGWCC	2 cut(s)	419, 455
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	2 cut(s)	178, 385
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	44
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	331, 465
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	158, 311
BfaI	CTAG	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	331, 465
Bme18I	GGWCC	2 cut(s)	419, 455
BmgT120I	GGNCC	3 cut(s)	327, 419, 455
BmiI	GGNNCC	2 cut(s)	180, 387
BmrFI	CCNGG	2 cut(s)	331, 465
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	62, 178
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 505
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	331, 465
BseCI	ATCGAT	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	464, 505
BseMII	CTCAG	3 cut(s)	306, 319, 427
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	363, 401
BseSI	GKGCMC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	178, 385
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	464, 505
BsmAI	GTCTC	2 cut(s)	158, 311
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	10, 367, 500
BspACI	CCGC	2 cut(s)	100, 137
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	3 cut(s)	307, 318, 426
BspDI	ATCGAT	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	180, 387
BspT107I	GGYRCC	2 cut(s)	178, 385
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	10, 367, 500
Bst2UI	CCWGG	2 cut(s)	331, 465
Bst4CI	ACNGT	2 cut(s)	253, 479
Bst6I	CTCTTC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	305, 315, 413
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	48, 55
BstKTI	GATC	3 cut(s)	13, 370, 503
BstMAI	GTCTC	2 cut(s)	158, 311
BstMBI	GATC	3 cut(s)	10, 367, 500
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
BstNI	CCWGG	2 cut(s)	331, 465
BstSCI	CCNGG	2 cut(s)	329, 463
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	9
BtsI	GCAGTG	2 cut(s)	48, 447
BtsIMutI	CAGTG	2 cut(s)	48, 447
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	48, 55
Cfr13I	GGNCC	3 cut(s)	327, 419, 455
ClaI	ATCGAT	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	463
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	82, 94, 329, 373, 527
CviKI_1	RGCY	5 cut(s)	82, 94, 329, 373, 527
DdeI	CTNAG	3 cut(s)	305, 315, 413
DpnI	GATC	3 cut(s)	12, 369, 502
DpnII	GATC	3 cut(s)	10, 367, 500
DraIII	CACNNNGTG	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	419, 455
Eco72I	CACGTG	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	329, 463
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	163
FaiI	YATR	5 cut(s)	161, 210, 212, 276, 495
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	367
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	47, 54
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	2 cut(s)	48, 55
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	2 cut(s)	46, 53
HinP1I	GCGC	2 cut(s)	46, 53
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	64, 308, 399, 416, 500
Hpy188III	TCNNGA	2 cut(s)	112, 160
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	5 cut(s)	286, 334, 499, 504, 517
HpyCH4III	ACNGT	2 cut(s)	253, 479
HpyCH4IV	ACGT	2 cut(s)	151, 433
HpyCH4V	TGCA	5 cut(s)	20, 214, 323, 377, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
HpyF3I	CTNAG	3 cut(s)	305, 315, 413
HpySE526I	ACGT	2 cut(s)	151, 433
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	2 cut(s)	46, 53
Kpn2I	TCCGGA	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	10, 367, 500
LpnPI	CCDG	9 cut(s)	6, 105, 125, 316, 330, 343, 450, 471, 477
MabI	ACCWGGT	1 cut(s)	463
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	151, 433
MaeIII	GTNAC	3 cut(s)	253, 295, 479
MalI	GATC	3 cut(s)	12, 369, 502
MboI	GATC	3 cut(s)	10, 367, 500
MboII	GAAGA	2 cut(s)	49, 148
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	7 cut(s)	17, 294, 341, 375, 410, 422, 524
MroI	TCCGGA	1 cut(s)	111
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	331, 465
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	331, 465
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	52, 383, 437
NdeII	GATC	3 cut(s)	10, 367, 500
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	180, 387
NmuCI	GTSAC	2 cut(s)	253, 479
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	503
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	329, 463
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	329, 463
PspN4I	GGNNCC	2 cut(s)	180, 387
PspPI	GGNCC	3 cut(s)	327, 419, 455
PstNI	CAGNNNCTG	1 cut(s)	464
PvuI	CGATCG	1 cut(s)	503
Sau3AI	GATC	3 cut(s)	10, 367, 500
Sau96I	GGNCC	3 cut(s)	327, 419, 455
ScrFI	CCNGG	2 cut(s)	331, 465
SduI	GDGCHC	1 cut(s)	388
SexAI	ACCWGGT	1 cut(s)	463
SinI	GGWCC	2 cut(s)	419, 455
SmlI	CTYRAG	2 cut(s)	77, 193
SmoI	CTYRAG	2 cut(s)	77, 193
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	100, 137
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	329, 463
TaaI	ACNGT	2 cut(s)	253, 479
TaiI	ACGT	2 cut(s)	154, 436
TaqI	TCGA	2 cut(s)	9, 503
TasI	AATT	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	2 cut(s)	55, 447
TseFI	GTSAC	2 cut(s)	253, 479
Tsp45I	GTSAC	2 cut(s)	253, 479
TspDTI	ATGAA	2 cut(s)	148, 291
TspRI	CASTG	2 cut(s)	55, 447
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	419, 455
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.