Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

28582241 .. 28584313

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1198200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGGATCGATCTCGTGGCAGGAGGTAAGAGCAAGAAGACGAAGCGCACTGCGCCCAAGTCCGATGATATCTATCTGAAGCTTCTCGTCAAGCTGTACCGTTTTCTTGTCCGGAGGACTGCAAGCAAGTTCAATGCAGTCATTCTTAAACGTTTGTTCATGAGCAAGGTCAACAAGGCACCACTTTCTCTCTCGAGGTTGATTAAGTATATGCAAGGAAAGGACAACAAGATTGCTGTTGTTGTGGGGACCATCACTGATGACATTAGGGTTTATGAAGTTCCACAAATGAAGGTTACAGCACTGAGGTTCACTGAGACTGCAAGGGCCAGGATTGAGAAGGCAGGAGGAGAGTGCTTGACATTTGATCAGCTTGCTTTGAGAGCACCGTTGGGTCAGAACGTGGTTCTCCTCAGAGGTCCTAAGAATTCTCGTGAAGCAGTGAAGCACTTCGGACCAGCTCCTGGTGTACCACACAGCCACACTAAACCTTATGTGCGGTCCAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCAAGGGCTTTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

10.89

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	2 - 187	7e-95	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	1 cut(s)	499
AclI	AACGTT	1 cut(s)	151
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	98, 471
AfiI	CCNNNNNNNGG	2 cut(s)	464, 510
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	329, 463
AluBI	AGCT	4 cut(s)	82, 94, 373, 461
AluI	AGCT	4 cut(s)	82, 94, 373, 461
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	193
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	48, 55
AspS9I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	4 cut(s)	249, 419, 455, 501
BanI	GGYRCC	1 cut(s)	178
BauI	CACGAG	2 cut(s)	14, 432
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	388
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	331, 465
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	331, 465
Bme18I	GGWCC	4 cut(s)	249, 419, 455, 501
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
BmiI	GGNNCC	2 cut(s)	180, 250
BmrFI	CCNGG	2 cut(s)	331, 465
BpiI	GAAGAC	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 510
Bse8I	GATNNNNATC	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	331, 465
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	504
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	464, 510
BseMII	CTCAG	3 cut(s)	296, 306, 427
BseRI	GAGGAG	2 cut(s)	363, 401
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	464, 510
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 10, 367
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	3 cut(s)	297, 307, 426
BspDI	ATCGAT	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	180, 250
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	6, 10, 367
BssSI	CACGAG	2 cut(s)	14, 432
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	2 cut(s)	14, 432
Bst2UI	CCWGG	2 cut(s)	331, 465
Bst4CI	ACNGT	2 cut(s)	101, 390
BstC8I	GCNNGC	2 cut(s)	124, 375
BstDEI	CTNAG	4 cut(s)	305, 315, 413, 423
BstHHI	GCGC	2 cut(s)	48, 55
BstKTI	GATC	3 cut(s)	9, 13, 370
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	6, 10, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 383
BstNI	CCWGG	2 cut(s)	331, 465
BstSCI	CCNGG	2 cut(s)	329, 463
BstV2I	GAAGAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	9
BtsI	GCAGTG	2 cut(s)	48, 447
BtsIMutI	CAGTG	5 cut(s)	48, 255, 302, 312, 447
Cac8I	GCNNGC	2 cut(s)	124, 375
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	48, 55
Cfr13I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	97, 470
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	8 cut(s)	82, 94, 329, 373, 461, 480, 527, 552
CviKI_1	RGCY	8 cut(s)	82, 94, 329, 373, 461, 480, 527, 552
CviQI	GTAC	2 cut(s)	97, 470
DdeI	CTNAG	4 cut(s)	305, 315, 413, 423
DpnI	GATC	3 cut(s)	8, 12, 369
DpnII	GATC	3 cut(s)	6, 10, 367
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	4 cut(s)	249, 419, 455, 501
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	329, 463
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	1 cut(s)	163
FaiI	YATR	5 cut(s)	161, 210, 212, 276, 495
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	367
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	47, 54
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	2 cut(s)	48, 55
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	2 cut(s)	46, 53
HinP1I	GCGC	2 cut(s)	46, 53
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	80
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	172, 312, 470
Hpy188I	TCNGA	5 cut(s)	64, 78, 399, 416, 455
Hpy188III	TCNNGA	4 cut(s)	112, 160, 193, 434
Hpy8I	GTNNAC	3 cut(s)	172, 312, 470
HpyAV	CCTTC	4 cut(s)	286, 334, 504, 517
HpyCH4III	ACNGT	2 cut(s)	101, 390
HpyCH4IV	ACGT	2 cut(s)	151, 402
HpyCH4V	TGCA	4 cut(s)	122, 137, 214, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 383
HpyF3I	CTNAG	4 cut(s)	305, 315, 413, 423
HpySE526I	ACGT	2 cut(s)	151, 402
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	2 cut(s)	46, 53
Kpn2I	TCCGGA	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	6, 10, 367
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	8 cut(s)	6, 125, 316, 330, 343, 450, 471, 477
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	151, 402
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	8, 12, 369
MboI	GATC	3 cut(s)	6, 10, 367
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	427
MnlI	CCTC	9 cut(s)	17, 108, 189, 300, 341, 410, 422, 524, 531
MroI	TCCGGA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	3 cut(s)	147, 204, 562
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	331, 465
MvaI	CCWGG	2 cut(s)	331, 465
MwoI	GCNNNNNNNGC	2 cut(s)	52, 383
NdeII	GATC	3 cut(s)	6, 10, 367
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	180, 250
PaeR7I	CTCGAG	1 cut(s)	193
PagI	TCATGA	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	329, 463
PspGI	CCWGG	2 cut(s)	329, 463
PspN4I	GGNNCC	2 cut(s)	180, 250
PspPI	GGNCC	5 cut(s)	249, 327, 419, 455, 501
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	98, 471
RsaNI	GTAC	2 cut(s)	97, 470
SaqAI	TTAA	3 cut(s)	147, 204, 562
Sau3AI	GATC	3 cut(s)	6, 10, 367
Sau96I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
ScrFI	CCNGG	2 cut(s)	331, 465
SduI	GDGCHC	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	193
SinI	GGWCC	4 cut(s)	249, 419, 455, 501
SlaI	CTCGAG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	329, 463
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	101, 390
TaiI	ACGT	2 cut(s)	154, 405
TaqI	TCGA	2 cut(s)	9, 194
TasI	AATT	1 cut(s)	427
Tru1I	TTAA	3 cut(s)	147, 204, 562
Tru9I	TTAA	3 cut(s)	147, 204, 562
TscAI	CASTG	5 cut(s)	55, 262, 309, 319, 447
TspDTI	ATGAA	3 cut(s)	148, 291, 305
TspRI	CASTG	5 cut(s)	55, 262, 309, 319, 447
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	4 cut(s)	249, 419, 455, 501
XapI	RAATTY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.