Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

29377203 .. 29378951

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAAATTACATATGGGCTCGTGGGAAATGCCCCATTTATACATAAAAACCTAAACACAACACCATGTTCGGCTTTCCCTGCAAACAAACCCTACAACCCTCCGCCTCTCTGCCTCAAGAGCATCAAAGGAGCAGCCGTAATGGGTATCGATTTGGTCGCCGGTGGCAAGAGCAAGAAGACCAAACGGACAGCCCCAAAGTCCGACGATATCTACCTCAAGCTCCTCGTCAAGCTGTATCGGTTTCTGGTGAGGAGGACCGGCAGCAAGTTCAATGCCGTGATTCTGAAGAGGTTGTTCATGAGCAAGGTGAACAAGGCCCCTCTGTCCCTTTCCCGATTGATTAAGTACATGGCCGGAAAGGAGGGTAAGATTGCTGTGGTGGTCGGGACTGTGACCGACGACATTCGGGTTTACGAAGTTCCTTGTTTGAAAGTGACCGCTCTCAGGTTCACCGAGACCGCCAGGGCTCGGATTGAGAAGGCCGGCGGCGAGTGCTTGACTTTCGACCAGCTGGCTCTCAGAGCTCCTCTTGGCCAGAACACGATTCTTCTTAGAGGACCTAAGAATGCTCGTGAAGCTGTGAAGCATTTTGGACCTGCTCCTGGTGTTCCACACAGCCACACCAAACCCTATGTGCGATCAAAGGGCAGGAAGTTCGAGAAGGCCAGAGGAAAAAGAAACAGCAAGGGTTTCCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

235

Amino Acids

25.77

Weight (kDa)

10.58

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	49 - 234	1.3e-94	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	443
AciI	CCGC	4 cut(s)	104, 441, 462, 489
AcoI	YGGCCR	2 cut(s)	354, 535
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	447, 471, 605
AgsI	TTSAA	2 cut(s)	274, 433
AjnI	CCWGG	2 cut(s)	464, 604
AluBI	AGCT	5 cut(s)	223, 235, 514, 527, 581
AluI	AGCT	5 cut(s)	223, 235, 514, 527, 581
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	452
AoxI	GGCC	5 cut(s)	318, 354, 483, 535, 666
ApeKI	GCWGC	2 cut(s)	134, 264
AspS9I	GGNCC	4 cut(s)	258, 319, 560, 596
AsuHPI	GGTGA	3 cut(s)	262, 322, 445
AvaII	GGWCC	3 cut(s)	258, 560, 596
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	3 cut(s)	21, 472, 529
BauI	CACGAG	2 cut(s)	20, 573
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	146, 276
BceAI	ACGGC	2 cut(s)	122, 263
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	2 cut(s)	466, 606
BcoDI	GTCTC	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	3 cut(s)	135, 265, 490
BlsI	GCNGC	3 cut(s)	136, 266, 491
Bme1390I	CCNGG	2 cut(s)	466, 606
Bme18I	GGWCC	3 cut(s)	258, 560, 596
BmgT120I	GGNCC	4 cut(s)	258, 319, 560, 596
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	466, 606
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	101, 203
Bsa29I	ATCGAT	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 471, 605
Bse118I	RCCGGY	3 cut(s)	161, 260, 485
BseBI	CCWGG	2 cut(s)	466, 606
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	447, 471, 605
BseMII	CTCAG	2 cut(s)	460, 535
BseRI	GAGGAG	3 cut(s)	215, 268, 519
BseXI	GCAGC	2 cut(s)	146, 276
BshFI	GGCC	5 cut(s)	320, 356, 485, 537, 668
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	4 cut(s)	162, 261, 357, 486
BslFI	GGGAC	2 cut(s)	313, 403
BslI	CCNNNNNNNGG	3 cut(s)	447, 471, 605
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	313, 403
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	5 cut(s)	320, 356, 485, 537, 668
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	21, 472, 529
Bsp143I	GATC	1 cut(s)	641
BspACI	CCGC	4 cut(s)	104, 441, 462, 489
BspANI	GGCC	5 cut(s)	320, 356, 485, 537, 668
BspCNI	CTCAG	2 cut(s)	459, 534
BspDI	ATCGAT	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	443
BsrFI	RCCGGY	3 cut(s)	161, 260, 485
BssAI	RCCGGY	3 cut(s)	161, 260, 485
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	1 cut(s)	641
BssSI	CACGAG	2 cut(s)	20, 573
Bst2BI	CACGAG	2 cut(s)	20, 573
Bst2UI	CCWGG	2 cut(s)	466, 606
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	487, 516
BstDEI	CTNAG	4 cut(s)	446, 521, 554, 564
BstKTI	GATC	1 cut(s)	644
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	641
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 120, 495, 524, 578
BstNI	CCWGG	2 cut(s)	466, 606
BstSCI	CCNGG	2 cut(s)	464, 604
BstV1I	GCAGC	2 cut(s)	146, 276
BstV2I	GAAGAC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	5 cut(s)	320, 356, 485, 537, 668
BsuTUI	ATCGAT	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	487, 516
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	3 cut(s)	161, 260, 485
Cfr13I	GGNCC	4 cut(s)	258, 319, 560, 596
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	66, 301, 352
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	446, 521, 554, 564
DpnI	GATC	1 cut(s)	643
DpnII	GATC	1 cut(s)	641
EaeI	YGGCCR	2 cut(s)	354, 535
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	527
Eco24I	GRGCYC	3 cut(s)	21, 472, 529
Eco31I	GGTCTC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	3 cut(s)	258, 560, 596
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	527
EcoO109I	RGGNCCY	2 cut(s)	319, 560
EcoRII	CCWGG	2 cut(s)	464, 604
EcoRV	GATATC	1 cut(s)	211
EcoT38I	GRGCYC	3 cut(s)	21, 472, 529
FaeI	CATG	3 cut(s)	69, 304, 355
FaiI	YATR	8 cut(s)	13, 15, 41, 45, 67, 302, 353, 636
FaqI	GGGAC	2 cut(s)	313, 403
FatI	CATG	3 cut(s)	65, 300, 351
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	135, 265, 490
FriOI	GRGCYC	3 cut(s)	21, 472, 529
Fsp4HI	GCNGC	3 cut(s)	135, 265, 490
GluI	GCNGC	3 cut(s)	135, 265, 490
HaeIII	GGCC	5 cut(s)	320, 356, 485, 537, 668
HapII	CCGG	4 cut(s)	162, 261, 357, 486
Hin1II	CATG	3 cut(s)	69, 304, 355
HinfI	GANTC	2 cut(s)	283, 547
HpaII	CCGG	4 cut(s)	162, 261, 357, 486
HphI	GGTGA	3 cut(s)	262, 322, 445
Hpy166II	GTNNAC	3 cut(s)	313, 415, 453
Hpy188I	TCNGA	4 cut(s)	205, 288, 474, 524
Hpy188III	TCNNGA	6 cut(s)	118, 301, 336, 388, 575, 661
Hpy8I	GTNNAC	3 cut(s)	313, 415, 453
Hpy99I	CGWCG	2 cut(s)	209, 404
HpyAV	CCTTC	2 cut(s)	475, 658
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 120, 495, 524, 578
HpyF3I	CTNAG	4 cut(s)	446, 521, 554, 564
Hsp92II	CATG	3 cut(s)	69, 304, 355
KroI	GCCGGC	1 cut(s)	485
KroNI	GCCGGC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	641
LmnI	GCTCC	4 cut(s)	131, 228, 532, 607
Lsp1109I	GCAGC	2 cut(s)	146, 276
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	394, 436
MalI	GATC	1 cut(s)	643
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	1 cut(s)	641
MboII	GAAGA	3 cut(s)	190, 301, 542
MhlI	GDGCHC	3 cut(s)	21, 472, 529
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	537
MroNI	GCCGGC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	345, 703
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	4 cut(s)	162, 261, 357, 486
MspR9I	CCNGG	2 cut(s)	466, 606
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	2 cut(s)	466, 606
MwoI	GCNNNNNNNGC	5 cut(s)	80, 120, 495, 524, 578
NaeI	GCCGGC	1 cut(s)	487
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	641
NgoMIV	GCCGGC	1 cut(s)	485
NlaIII	CATG	3 cut(s)	69, 304, 355
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	394, 436
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	574
PdiI	GCCGGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	283, 547
PkrI	GCNGC	3 cut(s)	136, 266, 491
PpuMI	RGGWCCY	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	464, 604
PspGI	CCWGG	2 cut(s)	464, 604
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	4 cut(s)	258, 319, 560, 596
PspPPI	RGGWCCY	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	345, 703
SatI	GCNGC	3 cut(s)	135, 265, 490
Sau3AI	GATC	1 cut(s)	641
Sau96I	GGNCC	4 cut(s)	258, 319, 560, 596
ScrFI	CCNGG	2 cut(s)	466, 606
SduI	GDGCHC	3 cut(s)	21, 472, 529
SfaNI	GCATC	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	161
SinI	GGWCC	3 cut(s)	258, 560, 596
SmlI	CTYRAG	2 cut(s)	116, 218
SmoI	CTYRAG	2 cut(s)	116, 218
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	4 cut(s)	104, 441, 462, 489
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	464, 604
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	150, 507, 660
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	1 cut(s)	6
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	283, 547
Tru1I	TTAA	2 cut(s)	345, 703
Tru9I	TTAA	2 cut(s)	345, 703
TseFI	GTSAC	2 cut(s)	394, 436
TseI	GCWGC	2 cut(s)	134, 264
Tsp45I	GTSAC	2 cut(s)	394, 436
TspDTI	ATGAA	2 cut(s)	17, 289
TspGWI	ACGGA	2 cut(s)	202, 686
VpaK11BI	GGWCC	3 cut(s)	258, 560, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.