Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Forward (+)

19531939 .. 19534471

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGAAGCCACTGATCCAAGCGCAGAGATCGAGCTCTACACCATTCCTGCTCAATCCAGTTGGTTCTTATGGGATGATATACACGAAATTGAAAGACGCGAGTTTGCGGAGTTCTTCACTGAGAGCTCAATCACTAGAACCCCCAAAGTTTACAAGGAGTACCGAGATTTCATTATCAATAAGTTTAGAGAGGACACTTGTCGGAGACTCACCTTCACCAGTGTCCGCAAGTTTCTTGTTGGCGATGTCAATTTGCTCCAGAAAGTTTTTCTCTTCCTCGAAAAATGGGGATTGATCAATTTTAGCTCTTCCCTGAAGAAAAATGACCATCTATTGTCCGTGGATAATGCTAAAATAGAACAAGGGACTCCTGCTGGAATTCGAGTTACTGCAACCCCTAATTCTCTTAGGCCTATAACCGCACCGCCCCTTGTTGAGGAAAGAGTTGAGACTGGCATCAAAGTACCACCGCTTACCTCTTATTCAGATGTTTTCAGTGATTTGAAGAAGCCGGATCATGTATTGGTTTGTGCGCATTGTGGAGAACGTTGCGATTCTCCTTTCTATCAACATAACAAGGGTATAGTCAACATATGCGAAAAGTGTTTCAAGAATGGAAACTATGGGGAGAACAACACTGCAGATGATTTTAAGTTGATTGGGAATTCAGCTGCAGCTGTGTGGACAGAGGAAGAGATCCTCCTCTTGCTAGAATCTGTGCTGAAACATGGAGATGATTGGGAACTCATTTCACAAAGTGTTTCTACCAAGAGTAGACTAGATTGCATTTCTAAACTCATTGAGCTCCCGTTTGGAGAGTTTCTGATGGGTTCTGCTTCTGGAAGACTCAATCCCTCTATCCTCACCGAGGATGAAAACACGGAACAGGTGCAAACTGATGGGCAGGAACATGAGGAAACAGAGACAAGGGAAGAAAAAGAAGATCGCGTGAATGAAGATGAGCCTCCAGCAAAAAGGAAACGTGTTGCACTGATATCAGAGGGTGATAGTTCACTTATGAAACAGGTCGCTGCCATGGCAAGTAAAGTTGGTCCATCTGTCGCAACTGCTGCTGCAAAAGCTGCACTTGCAGCTCTTTGTGATGAAGCCTCATGTCCAAAAGAGATTTTTGACACTGATGACTACAGCAATTTCACAGTTGATAGAGCCAATGGAGAGAAAGATACAGATATGGAGGAACAGCAAGAAGAGAAAGACGGGCCTCAGGGTCTACCTGTAGCGTTAAGGATAAGAGCGTCTGTGGCAACAGCTCTAGGAGCTGCGGCTGCACAAGCGAAAATACTGGCTGATCAAGAAGAAAGAGAAATGGAACAGTTAGCTGCGACAGTAATAGAACAACAGCTGAAGAAACTGCAGAGCAAGTTGAAGTTTCTAGACGACTTGGAATCGATAATGGATGAAGAAGAGAAAGTGATAGAGGGTGTAAAGGAAACAATCATCCAAGAGAGGGTTAGCGTTTTGCAATGCGCGTTTAGAAGCGGTATTACCAAACGTTGGGATCATACGTACGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

512

Amino Acids

57.48

Weight (kDa)

4.81

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	24 - 101	1.5e-23	SWIRM domain
Myb_DNA-binding	PF00249	228 - 266	1.3e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	423 - 493	3.4e-20	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	1515
AccI	GTMKAC	2 cut(s)	775, 1231
AccII	CGCG	3 cut(s)	99, 948, 1490
AciI	CCGC	7 cut(s)	107, 226, 420, 425, 470, 1283, 1500
AclI	AACGTT	2 cut(s)	547, 1513
AclWI	GGATC	4 cut(s)	8, 522, 691, 1527
AcsI	RAATTY	2 cut(s)	378, 664
AcuI	CTGAAG	2 cut(s)	335, 1385
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	3 cut(s)	161, 465, 1529
AfiI	CCNNNNNNNGG	4 cut(s)	436, 868, 1468, 1515
AflIII	ACRYGT	1 cut(s)	982
AgsI	TTSAA	4 cut(s)	92, 505, 610, 1387
Alw21I	GWGCWC	3 cut(s)	36, 128, 807
Alw26I	GTCTC	3 cut(s)	199, 443, 917
AlwI	GGATC	4 cut(s)	8, 522, 691, 1527
AoxI	GGCC	2 cut(s)	410, 1220
ApoI	RAATTY	2 cut(s)	378, 664
AspLEI	GCGC	3 cut(s)	23, 535, 1490
AspS9I	GGNCC	2 cut(s)	1052, 1220
AsuHPI	GGTGA	4 cut(s)	202, 208, 856, 1016
AvaII	GGWCC	1 cut(s)	1052
AxyI	CCTNAGG	1 cut(s)	1224
BanII	GRGCYC	3 cut(s)	36, 128, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	1489, 1521
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	3 cut(s)	36, 128, 807
BccI	CCATC	4 cut(s)	336, 820, 893, 1063
BclI	TGATCA	2 cut(s)	294, 1309
BcoDI	GTCTC	3 cut(s)	199, 443, 917
BfaI	CTAG	5 cut(s)	135, 710, 779, 1274, 1394
BfmI	CTRYAG	5 cut(s)	639, 672, 1144, 1236, 1373
Bme18I	GGWCC	1 cut(s)	1052
BmgT120I	GGNCC	2 cut(s)	1052, 1220
BmsI	GCATC	1 cut(s)	465
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	2 cut(s)	242, 951
Bsa29I	ATCGAT	1 cut(s)	1409
BsaAI	YACGTR	2 cut(s)	1527, 1531
BsaJI	CCNNGG	3 cut(s)	339, 867, 1035
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 868, 1468, 1515
Bse1I	ACTGG	4 cut(s)	57, 219, 457, 1308
Bse21I	CCTNAGG	1 cut(s)	1224
Bse3DI	GCAATG	1 cut(s)	1490
BseCI	ATCGAT	1 cut(s)	1409
BseDI	CCNNGG	3 cut(s)	339, 867, 1035
BseGI	GGATG	4 cut(s)	79, 877, 1423, 1458
BseLI	CCNNNNNNNGG	4 cut(s)	436, 868, 1468, 1515
BseMI	GCAATG	1 cut(s)	1490
BseMII	CTCAG	2 cut(s)	111, 1238
BseNI	ACTGG	4 cut(s)	57, 219, 457, 1308
BseRI	GAGGAG	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	1068, 1272
Bsh1236I	CGCG	3 cut(s)	99, 948, 1490
BshFI	GGCC	2 cut(s)	412, 1222
BshVI	ATCGAT	1 cut(s)	1409
BsiHKAI	GWGCWC	3 cut(s)	36, 128, 807
BsiSI	CCGG	1 cut(s)	512
BsiWI	CGTACG	1 cut(s)	1527
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	436, 868, 1468, 1515
BsmAI	GTCTC	3 cut(s)	199, 443, 917
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	412, 1222
Bsp1286I	GDGCHC	3 cut(s)	36, 128, 807
Bsp143I	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
Bsp19I	CCATGG	1 cut(s)	1035
BspACI	CCGC	7 cut(s)	107, 226, 420, 425, 470, 1283, 1500
BspANI	GGCC	2 cut(s)	412, 1222
BspCNI	CTCAG	2 cut(s)	112, 1237
BspDI	ATCGAT	1 cut(s)	1409
BspFNI	CGCG	3 cut(s)	99, 948, 1490
BspMAI	CTGCAG	3 cut(s)	643, 676, 1377
BspPI	GGATC	4 cut(s)	8, 522, 691, 1527
BspQI	GCTCTTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	1490
BsrI	ACTGG	4 cut(s)	57, 219, 457, 1308
BssECI	CCNNGG	3 cut(s)	339, 867, 1035
BssMI	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
BssT1I	CCWWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	1159, 1335, 1348
Bst6I	CTCTTC	5 cut(s)	278, 313, 687, 1203, 1419
BstAPI	GCANNNNNTGC	2 cut(s)	1070, 1082
BstBAI	YACGTR	2 cut(s)	1527, 1531
BstDEI	CTNAG	3 cut(s)	120, 407, 1224
BstDSI	CCRYGG	2 cut(s)	339, 1035
BstENI	CCTNNNNNAGG	2 cut(s)	434, 866
BstF5I	GGATG	4 cut(s)	79, 877, 1423, 1458
BstFNI	CGCG	3 cut(s)	99, 948, 1490
BstHHI	GCGC	3 cut(s)	23, 535, 1490
BstKTI	GATC	8 cut(s)	16, 30, 297, 517, 699, 946, 1312, 1522
BstMAI	GTCTC	3 cut(s)	199, 443, 917
BstMBI	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSFI	CTRYAG	5 cut(s)	639, 672, 1144, 1236, 1373
BstSNI	TACGTA	1 cut(s)	1527
BstUI	CGCG	3 cut(s)	99, 948, 1490
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
Bsu15I	ATCGAT	1 cut(s)	1409
Bsu36I	CCTNAGG	1 cut(s)	1224
BsuRI	GGCC	2 cut(s)	412, 1222
BsuTUI	ATCGAT	1 cut(s)	1409
BtgI	CCRYGG	2 cut(s)	339, 1035
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	79, 877, 1423, 1458
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	7 cut(s)	9, 117, 226, 502, 636, 989, 1134
CfoI	GCGC	3 cut(s)	23, 535, 1490
Cfr13I	GGNCC	2 cut(s)	1052, 1220
ClaI	ATCGAT	1 cut(s)	1409
CseI	GACGC	2 cut(s)	105, 1245
Csp6I	GTAC	3 cut(s)	160, 464, 1528
CviAII	CATG	5 cut(s)	518, 728, 911, 1036, 1113
CviQI	GTAC	3 cut(s)	160, 464, 1528
DdeI	CTNAG	3 cut(s)	120, 407, 1224
DpnI	GATC	8 cut(s)	15, 29, 296, 516, 698, 945, 1311, 1521
DpnII	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
DraIII	CACNNNGTG	1 cut(s)	758
Eam1104I	CTCTTC	5 cut(s)	278, 313, 687, 1203, 1419
EarI	CTCTTC	5 cut(s)	278, 313, 687, 1203, 1419
Ecl136II	GAGCTC	3 cut(s)	34, 126, 805
Eco105I	TACGTA	1 cut(s)	1527
Eco130I	CCWWGG	1 cut(s)	1035
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	3 cut(s)	36, 128, 807
Eco32I	GATATC	1 cut(s)	996
Eco47I	GGWCC	1 cut(s)	1052
Eco53kI	GAGCTC	3 cut(s)	34, 126, 805
Eco57I	CTGAAG	2 cut(s)	335, 1385
Eco81I	CCTNAGG	1 cut(s)	1224
EcoICRI	GAGCTC	3 cut(s)	34, 126, 805
EcoNI	CCTNNNNNAGG	2 cut(s)	434, 866
EcoRI	GAATTC	2 cut(s)	378, 664
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT38I	GRGCYC	3 cut(s)	36, 128, 807
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	5 cut(s)	521, 731, 914, 1039, 1116
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	517, 727, 910, 1035, 1112
FauNDI	CATATG	1 cut(s)	593
FbaI	TGATCA	2 cut(s)	294, 1309
FblI	GTMKAC	2 cut(s)	775, 1231
FokI	GGATG	4 cut(s)	86, 884, 1430, 1445
FriOI	GRGCYC	3 cut(s)	36, 128, 807
FspAI	RTGCGCAY	1 cut(s)	534
FspBI	CTAG	5 cut(s)	135, 710, 779, 1274, 1394
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	3 cut(s)	22, 534, 1489
GsuI	CTGGAG	2 cut(s)	242, 951
HaeIII	GGCC	2 cut(s)	412, 1222
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	2 cut(s)	105, 1245
HhaI	GCGC	3 cut(s)	23, 535, 1490
Hin1II	CATG	5 cut(s)	521, 731, 914, 1039, 1116
Hin6I	GCGC	3 cut(s)	21, 533, 1488
HinP1I	GCGC	3 cut(s)	21, 533, 1488
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	6 cut(s)	207, 367, 554, 713, 846, 1406
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	4 cut(s)	202, 208, 856, 1016
Hpy166II	GTNNAC	6 cut(s)	151, 589, 684, 776, 1013, 1232
Hpy188I	TCNGA	4 cut(s)	204, 487, 825, 1000
Hpy188III	TCNNGA	5 cut(s)	259, 610, 840, 1313, 1394
Hpy8I	GTNNAC	6 cut(s)	151, 589, 684, 776, 1013, 1232
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	1159, 1335, 1348
HpyCH4IV	ACGT	5 cut(s)	547, 982, 1513, 1526, 1530
HpyF3I	CTNAG	3 cut(s)	120, 407, 1224
HpySE526I	ACGT	5 cut(s)	547, 982, 1513, 1526, 1530
Hsp92II	CATG	5 cut(s)	521, 731, 914, 1039, 1116
HspAI	GCGC	3 cut(s)	21, 533, 1488
Ksp22I	TGATCA	2 cut(s)	294, 1309
Kzo9I	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	3 cut(s)	261, 810, 1277
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	5 cut(s)	135, 710, 779, 1274, 1394
MaeII	ACGT	5 cut(s)	547, 982, 1513, 1526, 1530
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	8 cut(s)	15, 29, 296, 516, 698, 945, 1311, 1521
MboI	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	3 cut(s)	36, 128, 807
MluCI	AATT	7 cut(s)	87, 250, 298, 378, 400, 664, 1150
MlyI	GAGTC	3 cut(s)	201, 361, 840
MmeI	TCCRAC	1 cut(s)	182
MseI	TTAA	2 cut(s)	651, 1244
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	3 cut(s)	671, 677, 1363
MspI	CCGG	1 cut(s)	512
MvnI	CGCG	3 cut(s)	99, 948, 1490
NcoI	CCATGG	1 cut(s)	1035
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
NlaIII	CATG	5 cut(s)	521, 731, 914, 1039, 1116
NsbI	TGCGCA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	554, 713, 1406
Pfl23II	CGTACG	1 cut(s)	1527
PflMI	CCANNNNNTGG	1 cut(s)	1515
PleI	GAGTC	3 cut(s)	201, 361, 840
PpsI	GAGTC	3 cut(s)	201, 361, 840
Ppu21I	YACGTR	2 cut(s)	1527, 1531
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	3 cut(s)	36, 128, 807
Psp1406I	AACGTT	2 cut(s)	547, 1513
PspLI	CGTACG	1 cut(s)	1527
PspPI	GGNCC	2 cut(s)	1052, 1220
PstI	CTGCAG	3 cut(s)	643, 676, 1377
PsuI	RGATCY	1 cut(s)	696
PvuII	CAGCTG	3 cut(s)	671, 677, 1363
RsaI	GTAC	3 cut(s)	161, 465, 1529
RsaNI	GTAC	3 cut(s)	160, 464, 1528
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	3 cut(s)	36, 128, 807
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	651, 1244
Sau3AI	GATC	8 cut(s)	13, 27, 294, 514, 696, 943, 1309, 1519
Sau96I	GGNCC	2 cut(s)	1052, 1220
SchI	GAGTC	3 cut(s)	201, 361, 840
SduI	GDGCHC	3 cut(s)	36, 128, 807
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	5 cut(s)	639, 672, 1144, 1236, 1373
SinI	GGWCC	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	732
SnaBI	TACGTA	1 cut(s)	1527
Sse9I	AATT	7 cut(s)	87, 250, 298, 378, 400, 664, 1150
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	7 cut(s)	107, 226, 420, 425, 470, 1283, 1500
SspMI	CTAG	5 cut(s)	135, 710, 779, 1274, 1394
SstI	GAGCTC	3 cut(s)	36, 128, 807
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	3 cut(s)	1159, 1335, 1348
TaiI	ACGT	5 cut(s)	550, 985, 1516, 1529, 1533
TaqI	TCGA	4 cut(s)	30, 279, 382, 1409
TasI	AATT	7 cut(s)	87, 250, 298, 378, 400, 664, 1150
TauI	GCSGC	1 cut(s)	1286
TfiI	GAWTC	3 cut(s)	554, 713, 1406
Tru1I	TTAA	2 cut(s)	651, 1244
Tru9I	TTAA	2 cut(s)	651, 1244
TscAI	CASTG	7 cut(s)	16, 124, 226, 502, 643, 996, 1141
TspDTI	ATGAA	6 cut(s)	160, 888, 969, 1034, 1119, 1434
TspGWI	ACGGA	2 cut(s)	328, 896
TspRI	CASTG	7 cut(s)	16, 124, 226, 502, 643, 996, 1141
Van91I	CCANNNNNTGG	1 cut(s)	1515
VpaK11BI	GGWCC	1 cut(s)	1052
XagI	CCTNNNNNAGG	2 cut(s)	434, 866
XapI	RAATTY	2 cut(s)	378, 664
XbaI	TCTAGA	1 cut(s)	1393
XmiI	GTMKAC	2 cut(s)	775, 1231
XspI	CTAG	5 cut(s)	135, 710, 779, 1274, 1394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.