Rh7CG108500
MYB Family

SWI SNF complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
8359420 .. 8362536
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG108500.1

Sequence Viewer

Length: 1389 bp
ATGGAACTTGCACCGCACGACCCGGGTTCAAAGCAGGTCCGACCCGACGAACCAGAGCTCGACCTCTACACCATCCCAAGCCACTCTAGCTGGTTTTTGTGGGATGAGATTCATGAAACTGAGAGAATTGCTTTGAAGGAGTTCTTTGATGGGAGGTCGATATCAAGAACACCAAAGGTGTACAAAGAATATAGGGACTTTATTATTAACAAGTATAGAGAAGACCCAGCTAGAAAACTCACATTCACCGAGATTCGAAGGTCACTTGTGGGTGATGTTACTTTGCTGCACAAGGTCTTTAGTTTCTTGGAAAAATGGGGGTTGATTAATTTTGGGGCAAGTTCGGATGGCAATGACGGTTTTGGTACCTCGGGTGAGGCCGGGACTACGGTTAAGGTTGAGGAAGGAGTCCCAAATGCGGTCCGAGTGGGTGCAAATCCAAGTGATTCTAAGCCCCTTTCGGCCACACCTACGGTAGTGGACAGTGGGGGTGGAAGTGCGAGTAGAATTACATTGCCTCCATTGGCATCATACTCGAATGTTTTTGGTGATTTGAAGAAAGAGAGCTTGGTTTGTGGCAATTGTGGCGGACATTGTGATTCTGGACACTACAAGTATAATAAGGTTGATTTTCTACTTTGCACAAAGTGTTTTGAAAATGGAAACCATGGGGAGAACAAATTGAAGGAAAATTTCAAGTACAACGAGCCAGTTGAAAAGAGTAGTAATATGGGAGTTGAGTGGACTGAATCAGAAACTTTACTTCTTTTAGATTCAGTTGCAAAGCATGGAGATGATTGGGATTGTGTTGCTCAAAATGTTAAGACCAAGACCAAAGTTGATTGTATTGCTAAGCTTATTGATTTGCCTTTTGGGGAGGTTGTGTTGGGTTCTGGTCACAGAAAAGGTAACCATAGTGGCTTTAGTGGCAACTTGAGCGGTTCAAAACAAGGTCAGTTATCTTCATCTGAGTGTCAAGAGACTATCAAAACCAAGAGTCAGAGCCATGAGCAGATAAATGACAGTGAGCAGAATGGAGATACTGCAAACCAAGGTCCCCCTTTGAAAAAACAACGCGTCGCTTCCCTTTCGGATGCTAGTAGTTCACTTATTACACAGGTATCTGCCTTGTCAACCTTGGTTGGTCCGCATATTACAGCTTCTGCAGCGGAGGCTGCTGTTAATGCACTTTGTGAGGAAACCTCATGTTCAAAGGAGATATTTAATGCTGAAGACGATTGTGTTAGTAATGGCTTGCAGTCTCCCGCTATAAATTGTGAGACAGAGAGAGTCCTTCAACTTGAAGATTCAGAGATGAAGGAAAGGCCCACTGAATCAGGTATATGCAGTAAGCCAACTTTACAATATGATTTCTGTATATATGGCTGA

Protein Analysis

462

Amino Acids

50.41

Weight (kDa)

5.15

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 34 - 111 2e-25 SWIRM domain
Myb_DNA-binding PF00249 247 - 285 4.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 939
AccII CGCG 1 cut(s) 1077
AciI CCGC 7 cut(s) 14, 419, 588, 939, 1148, 1169, 1266
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 1 cut(s) 1251
AdeI CACNNNGTG 2 cut(s) 648, 1193
AfaI GTAC 3 cut(s) 182, 367, 701
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 58, 90, 230, 567, 856, 1160
AluI AGCT 6 cut(s) 58, 90, 230, 567, 856, 1160
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 974, 1266, 1274
AlwNI CAGNNNCTG 1 cut(s) 1163
Ama87I CYCGRG 2 cut(s) 22, 370
AoxI GGCC 3 cut(s) 378, 462, 1325
ApeKI GCWGC 3 cut(s) 286, 1166, 1175
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 5 cut(s) 37, 421, 1055, 1145, 1326
AsuC2I CCSGG 3 cut(s) 23, 24, 382
AsuHPI GGTGA 4 cut(s) 238, 284, 386, 560
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 2 cut(s) 22, 370
AvaII GGWCC 4 cut(s) 37, 421, 1055, 1145
BaeI ACNNNNGTAYC 2 cut(s) 1104, 1137
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 228, 1239
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 273, 1162, 1178
BccI CCATC 3 cut(s) 80, 143, 341
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BcnI CCSGG 3 cut(s) 23, 24, 382
BcoDI GTCTC 3 cut(s) 974, 1266, 1274
BfaI CTAG 3 cut(s) 87, 231, 1098
BfmI CTRYAG 1 cut(s) 1164
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 3 cut(s) 287, 1167, 1176
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 3 cut(s) 288, 1168, 1177
Bme1390I CCNGG 3 cut(s) 23, 24, 382
Bme18I GGWCC 4 cut(s) 37, 421, 1055, 1145
BmeT110I CYCGRG 2 cut(s) 22, 370
BmgT120I GGNCC 5 cut(s) 37, 421, 1055, 1145, 1326
BmiI GGNNCC 2 cut(s) 367, 1057
BmrFI CCNGG 3 cut(s) 23, 24, 382
BmsI GCATC 2 cut(s) 536, 1084
BpiI GAAGAC 2 cut(s) 228, 1239
BplI GAGNNNNNCTC 2 cut(s) 1187, 1219
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 955
BpuMI CCSGG 3 cut(s) 23, 24, 382
BsaJI CCNNGG 5 cut(s) 22, 369, 667, 1051, 1137
BsaXI ACNNNNNCTCC 4 cut(s) 502, 532, 869, 899
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 2 cut(s) 358, 512
BseDI CCNNGG 5 cut(s) 22, 369, 667, 1051, 1137
BseGI GGATG 4 cut(s) 72, 109, 352, 1099
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 2 cut(s) 358, 512
BseMII CTCAG 2 cut(s) 111, 960
BseNI ACTGG 1 cut(s) 710
BseXI GCAGC 3 cut(s) 273, 1162, 1178
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 3 cut(s) 380, 464, 1327
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 2 cut(s) 22, 370
BsiSI CCGG 2 cut(s) 23, 381
BslFI GGGAC 4 cut(s) 209, 395, 397, 1041
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 3 cut(s) 974, 1266, 1274
BsmFI GGGAC 4 cut(s) 209, 395, 397, 1041
BsnI GGCC 3 cut(s) 380, 464, 1327
BsoBI CYCGRG 2 cut(s) 22, 370
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 852
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 7 cut(s) 14, 419, 588, 939, 1148, 1169, 1266
BspANI GGCC 3 cut(s) 380, 464, 1327
BspCNI CTCAG 2 cut(s) 112, 961
BspFNI CGCG 1 cut(s) 1077
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 367, 1057
BspMAI CTGCAG 1 cut(s) 1168
BspMI ACCTGC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 939
BsrDI GCAATG 2 cut(s) 358, 512
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 710
BssECI CCNNGG 5 cut(s) 22, 369, 667, 1051, 1137
BssT1I CCWWGG 3 cut(s) 667, 1051, 1137
Bst4CI ACNGT 5 cut(s) 359, 391, 475, 485, 1025
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 1256
BstDEI CTNAG 4 cut(s) 120, 450, 852, 969
BstDSI CCRYGG 1 cut(s) 667
BstEII GGTNACC 1 cut(s) 908
BstF5I GGATG 4 cut(s) 72, 109, 352, 1099
BstFNI CGCG 1 cut(s) 1077
BstMAI GTCTC 3 cut(s) 974, 1266, 1274
BstMWI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
BstPI GGTNACC 1 cut(s) 908
BstSCI CCNGG 3 cut(s) 21, 22, 380
BstSFI CTRYAG 1 cut(s) 1164
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 3 cut(s) 273, 1162, 1178
BstV2I GAAGAC 2 cut(s) 228, 1239
BsuRI GGCC 3 cut(s) 380, 464, 1327
BtgI CCRYGG 1 cut(s) 667
BtsCI GGATG 4 cut(s) 72, 109, 352, 1099
BtsIMutI CAGTG 3 cut(s) 490, 1030, 1329
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 1256
CaiI CAGNNNCTG 1 cut(s) 1163
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 5 cut(s) 37, 421, 1055, 1145, 1326
Cfr9I CCCGGG 1 cut(s) 22
CpoI CGGWCCG 1 cut(s) 421
CseI GACGC 1 cut(s) 1066
Csp6I GTAC 3 cut(s) 181, 366, 700
CspI CGGWCCG 1 cut(s) 421
CviAII CATG 5 cut(s) 113, 668, 788, 1007, 1206
CviQI GTAC 3 cut(s) 181, 366, 700
DdeI CTNAG 4 cut(s) 120, 450, 852, 969
DraIII CACNNNGTG 2 cut(s) 648, 1193
EaeI YGGCCR 1 cut(s) 462
EciI GGCGGA 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 667, 1051, 1137
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 4 cut(s) 37, 421, 1055, 1145
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 1251
Eco88I CYCGRG 2 cut(s) 22, 370
Eco91I GGTNACC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 908
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 3 cut(s) 667, 1051, 1137
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 3 cut(s) 667, 1051, 1137
FaeI CATG 5 cut(s) 116, 671, 791, 1010, 1209
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 4 cut(s) 209, 395, 397, 1041
FatI CATG 5 cut(s) 112, 667, 787, 1006, 1205
FauI CCCGC 1 cut(s) 1273
Fnu4HI GCNGC 3 cut(s) 287, 1167, 1176
FokI GGATG 4 cut(s) 59, 116, 359, 1106
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 287, 1167, 1176
FspBI CTAG 3 cut(s) 87, 231, 1098
GluI GCNGC 3 cut(s) 287, 1167, 1176
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 3 cut(s) 380, 464, 1327
HapII CCGG 2 cut(s) 23, 381
HgaI GACGC 1 cut(s) 1066
Hin1II CATG 5 cut(s) 116, 671, 791, 1010, 1209
HincII GTYRAC 1 cut(s) 1134
HindII GTYRAC 1 cut(s) 1134
HindIII AAGCTT 1 cut(s) 854
HpaII CCGG 2 cut(s) 23, 381
HphI GGTGA 4 cut(s) 238, 284, 386, 560
Hpy166II GTNNAC 5 cut(s) 181, 481, 744, 1106, 1134
Hpy188I TCNGA 8 cut(s) 41, 346, 425, 754, 970, 1002, 1093, 1312
Hpy188III TCNNGA 4 cut(s) 113, 165, 603, 977
Hpy8I GTNNAC 5 cut(s) 181, 481, 744, 1106, 1134
Hpy99I CGWCG 2 cut(s) 50, 1082
HpyAV CCTTC 6 cut(s) 130, 252, 398, 679, 1304, 1312
HpyCH4III ACNGT 5 cut(s) 359, 391, 475, 485, 1025
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
HpyF3I CTNAG 4 cut(s) 120, 450, 852, 969
Hsp92II CATG 5 cut(s) 116, 671, 791, 1010, 1209
KpnI GGTACC 1 cut(s) 369
Lsp1109I GCAGC 3 cut(s) 273, 1162, 1178
LweI GCATC 2 cut(s) 536, 1084
MaeI CTAG 3 cut(s) 87, 231, 1098
MaeIII GTNAC 4 cut(s) 261, 277, 896, 908
MbiI CCGCTC 1 cut(s) 939
MboII GAAGA 5 cut(s) 233, 568, 954, 1244, 1316
MfeI CAATTG 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
MluI ACGCGT 1 cut(s) 1075
MlyI GAGTC 3 cut(s) 417, 1006, 1299
MmeI TCCRAC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 6 cut(s) 207, 327, 393, 822, 1182, 1224
MslI CAYNNNNRTG 2 cut(s) 792, 970
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 2 cut(s) 23, 381
MspR9I CCNGG 3 cut(s) 23, 24, 382
MunI CAATTG 1 cut(s) 580
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
NciI CCSGG 3 cut(s) 23, 24, 382
NcoI CCATGG 1 cut(s) 667
NlaIII CATG 5 cut(s) 116, 671, 791, 1010, 1209
NlaIV GGNNCC 2 cut(s) 367, 1057
NmuCI GTSAC 2 cut(s) 261, 896
NspV TTCGAA 1 cut(s) 256
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 109, 253, 446, 599, 749, 773, 1307, 1334
PkrI GCNGC 3 cut(s) 288, 1168, 1177
PleI GAGTC 3 cut(s) 416, 1005, 1298
PpsI GAGTC 3 cut(s) 416, 1005, 1298
PpuMI RGGWCCY 1 cut(s) 1055
PshBI ATTAAT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 1055
PspEI GGTNACC 1 cut(s) 908
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 367, 1057
PspPI GGNCC 5 cut(s) 37, 421, 1055, 1145, 1326
PspPPI RGGWCCY 1 cut(s) 1055
PstI CTGCAG 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 1163
RsaI GTAC 3 cut(s) 182, 367, 701
RsaNI GTAC 3 cut(s) 181, 366, 700
RseI CAYNNNNRTG 2 cut(s) 792, 970
Rsr2I CGGWCCG 1 cut(s) 421
RsrII CGGWCCG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 6 cut(s) 207, 327, 393, 822, 1182, 1224
SatI GCNGC 3 cut(s) 287, 1167, 1176
Sau96I GGNCC 5 cut(s) 37, 421, 1055, 1145, 1326
SchI GAGTC 3 cut(s) 417, 1006, 1299
ScrFI CCNGG 3 cut(s) 23, 24, 382
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 2 cut(s) 536, 1084
SfcI CTRYAG 1 cut(s) 1164
SfuI TTCGAA 1 cut(s) 256
SinI GGWCC 4 cut(s) 37, 421, 1055, 1145
SmaI CCCGGG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 792, 970
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
Sse9I AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
SsiI CCGC 7 cut(s) 14, 419, 588, 939, 1148, 1169, 1266
SspMI CTAG 3 cut(s) 87, 231, 1098
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 21, 22, 380
StyI CCWWGG 3 cut(s) 667, 1051, 1137
TaaI ACNGT 5 cut(s) 359, 391, 475, 485, 1025
TaqI TCGA 4 cut(s) 60, 158, 256, 536
TasI AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
TatI WGTACW 2 cut(s) 180, 699
TfiI GAWTC 8 cut(s) 109, 253, 446, 599, 749, 773, 1307, 1334
Tru1I TTAA 6 cut(s) 207, 327, 393, 822, 1182, 1224
Tru9I TTAA 6 cut(s) 207, 327, 393, 822, 1182, 1224
TscAI CASTG 3 cut(s) 490, 1030, 1336
TseFI GTSAC 2 cut(s) 261, 896
TseI GCWGC 3 cut(s) 286, 1166, 1175
Tsp45I GTSAC 2 cut(s) 261, 896
TspDTI ATGAA 4 cut(s) 101, 129, 954, 1331
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 3 cut(s) 490, 1030, 1336
VpaK11BI GGWCC 4 cut(s) 37, 421, 1055, 1145
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 691
XmaI CCCGGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 87, 231, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.