Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438941.1

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1168

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438941.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 524 bp

cttctgcagctgaggctgctgttaatgcactttgtgaggaaacctcatgttcaaaggagatatttaatgctgaagacgattgtgttactaatggcttgcagtctcccgctataaattgtgagacagagagagtccttcaacttgaagattcagagatgaaggaaaggccaactgaatcagcgggtcaggatgcgtttataaaaaaagatgacatacctccaactttgcaaattagagctgccatcgcaacaggtcttggagcagctgctgctcgtgccaaattactggctgatcaggaggatagagagattgaacatcttttggcaaccataatagggacacagatgaagaagttgcactgcaaaatcaagaccgtcgaagaactggatctgcttatggagaaggaatacgcagaaatggaagaagaagaagattctctgctagaagagcgaattgacatcatacaaaagacactcgactctggcgtacctagatggagggatcatcctcctgtaaaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

173

Amino Acids

19.21

Weight (kDa)

4.51

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	199
AciI	CCGC	2 cut(s)	107, 181
AclWI	GGATC	2 cut(s)	395, 509
AcuI	CTGAAG	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	53, 139, 145, 313
AluBI	AGCT	3 cut(s)	10, 238, 265
AluI	AGCT	3 cut(s)	10, 238, 265
Alw26I	GTCTC	2 cut(s)	107, 115
AlwI	GGATC	2 cut(s)	395, 509
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	6 cut(s)	7, 16, 238, 262, 265, 268
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	6 cut(s)	3, 19, 225, 252, 255, 274
BccI	CCATC	2 cut(s)	250, 488
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	107, 115
BfaI	CTAG	2 cut(s)	442, 491
BfmI	CTRYAG	1 cut(s)	5
BisI	GCNGC	6 cut(s)	8, 17, 239, 263, 266, 269
BlsI	GCNGC	6 cut(s)	9, 18, 240, 264, 267, 270
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu10I	CCTNAGC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	290, 389
BseGI	GGATG	2 cut(s)	195, 504
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	290, 389
BseXI	GCAGC	6 cut(s)	3, 19, 225, 252, 255, 274
BshFI	GGCC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	107, 115
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	291, 387, 501
BspACI	CCGC	2 cut(s)	107, 181
BspANI	GGCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	2 cut(s)	395, 509
BspQI	GCTCTTC	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	290, 389
BssMI	GATC	3 cut(s)	291, 387, 501
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	195, 504
BstKTI	GATC	3 cut(s)	294, 390, 504
BstMAI	GTCTC	2 cut(s)	107, 115
BstMBI	GATC	3 cut(s)	291, 387, 501
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 16, 25, 244, 268, 274, 447
BstSFI	CTRYAG	1 cut(s)	5
BstV1I	GCAGC	6 cut(s)	3, 19, 225, 252, 255, 274
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	195, 504
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	7 cut(s)	10, 16, 95, 168, 238, 265, 289
CviKI_1	RGCY	7 cut(s)	10, 16, 95, 168, 238, 265, 289
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	293, 389, 503
DpnII	GATC	3 cut(s)	291, 387, 501
DraIII	CACNNNGTG	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	92
FaeI	CATG	1 cut(s)	50
FaiI	YATR	7 cut(s)	48, 112, 199, 214, 331, 397, 463
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	46
FauI	CCCGC	2 cut(s)	114, 174
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	8, 17, 239, 263, 266, 269
FokI	GGATG	2 cut(s)	202, 491
Fsp4HI	GCNGC	6 cut(s)	8, 17, 239, 263, 266, 269
FspBI	CTAG	2 cut(s)	442, 491
GluI	GCNGC	6 cut(s)	8, 17, 239, 263, 266, 269
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	5 cut(s)	131, 148, 175, 433, 478
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	4 cut(s)	187, 295, 369, 521
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	145, 153, 396
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	7, 28, 99, 228, 357, 362
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 16, 25, 244, 268, 274, 447
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	291, 387, 501
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	172, 236, 271, 280, 370, 467
Lsp1109I	GCAGC	6 cut(s)	3, 19, 225, 252, 255, 274
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	442, 491
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	3 cut(s)	293, 389, 503
MboI	GATC	3 cut(s)	291, 387, 501
MboII	GAAGA	9 cut(s)	85, 157, 360, 391, 433, 436, 439, 442, 457
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	4 cut(s)	114, 230, 280, 452
MlyI	GAGTC	2 cut(s)	140, 472
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	6, 30, 54, 227, 291, 491, 518
MseI	TTAA	2 cut(s)	23, 65
MspA1I	CMGCKG	3 cut(s)	10, 181, 265
MwoI	GCNNNNNNNGC	7 cut(s)	13, 16, 25, 244, 268, 274, 447
NdeII	GATC	3 cut(s)	291, 387, 501
NlaIII	CATG	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	148, 175, 433
PkrI	GCNGC	6 cut(s)	9, 18, 240, 264, 267, 270
PleI	GAGTC	2 cut(s)	139, 472
PpsI	GAGTC	2 cut(s)	139, 472
PsiI	TTATAA	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	2 cut(s)	10, 265
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	23, 65
SatI	GCNGC	6 cut(s)	8, 17, 239, 263, 266, 269
Sau3AI	GATC	3 cut(s)	291, 387, 501
SchI	GAGTC	2 cut(s)	140, 472
SetI	ASST	7 cut(s)	12, 46, 219, 240, 255, 267, 492
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	5
Sse9I	AATT	4 cut(s)	114, 230, 280, 452
SsiI	CCGC	2 cut(s)	107, 181
SspMI	CTAG	2 cut(s)	442, 491
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	377, 476
TasI	AATT	4 cut(s)	114, 230, 280, 452
TfiI	GAWTC	3 cut(s)	148, 175, 433
Tru1I	TTAA	2 cut(s)	23, 65
Tru9I	TTAA	2 cut(s)	23, 65
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	6 cut(s)	7, 16, 238, 262, 265, 268
TspDTI	ATGAA	2 cut(s)	172, 361
TspRI	CASTG	1 cut(s)	364
XspI	CTAG	2 cut(s)	442, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.