Rh7DG105800
MYB Family

SWI SNF complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
9048671 .. 9051889
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG105800.1

Sequence Viewer

Length: 1362 bp
ATGGAACTTGCACCGCACGACCCGGGTTCAAAGCAGCTCCGACCCGACGAACCAGAGCTCGACCTCTACACCATCCCAAGCCACTCTAGCTGGTTTTTGTGGGATGAGATTCATGAAACTGAGAGAATTGCTTTGAAGGAGTTCTTTGATGGGAGGTCGATATCAAGAACACCAAAGGTGTACAAAGAATATAGGGACTTTATTATTAACAAGTATAGAGAAGACCCAGCTAGAAAACTCACATTCACCGAGATTCGAAAGTCACTTGTGGGTGATGTTACTTTGCTGCACAAGGTCTTTAGTTTCTTGGAAAAATGGGGGTTGATTAATTTTGGGGCAAGTTCGGGTGACAATGACGGTTTTGGTACCTCGGGTGAGGCCGGGACTACGGTTAAGGTTGAGGAAGGAGTCCCAAATGCGGTCCGAGTGGGTGCAAATCCAAGTGATTCTAAGCCCCTTTCGGCCACACCTACGGTAGTGGACAGTGGGGGTGGAAGTGCGAGTAGAATTACATTGCCTCCATTGGCATCATACTCGAATGTTTTTGGTGATTTGAAGAAAGAGAGCTTGGTTTGTGGCAATTGTGGCGGACATTGTGATTCTGGACACTACAAGTATAACAAGGGTGATTTTCTACTTTGCACAAAGTGTTTTGAAAATGGAAACTACGGGGAGAACAAATTGAAGGAAAATTTCAAGTACAACGAGCCAGTTGAAAAGAGTAGTAATATGGGAGTTGAGTGGACTGAATCAGAAACTTTACTTCTTTTAGATTCAGTTGCAAAGCATGGAGATGATTGGGATCGTGTTGCTCAAAATGTTAAGACCAAGACCAAAGTTGATTGTATTGCTAAGCTTATTGATTTGCCTTTTGGGGAGGTTGTGTTGGGTTCTGGTCACAGAAAAGGTAACCATAGTGGCTTTAGTGGCAACTTGAGCGGTTCAAAACAAGGTCAGTTATCTTCATCTGAGTGTCAAGAGACTATCAAAACCAAGAGTCAGAGCCATGAGCAGACAAATGACAGTGAGCAGAATGGAGATACTGCAAACCAAGGTCCCCCTTTGAAAAAACAACGCGTCGCTTCCCTTTCGGATGCTAGTAGTTCACTTATTACACAGGTATCTGCCTTGTCAACCTTGGTTGGTCCGCATATTACAGCTTCTGCAGCTGAGGCTGCTGTTAATGCACTTTGTGAGGAAACCTCATGTTCAAAGGAGATATTTAATGCTGAAGACGATTGTGTTACTAATGGCTTGCAGTCTCCCGCTATAAATTGTGAGACAGAGAGGTTATCTATCTACTTATATGCTTTTCCAACTGATGCTCCAGATATTAGTCTGCTAGTTAATGTATTATGTTGA

Protein Analysis

453

Amino Acids

49.29

Weight (kDa)

5.18

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 34 - 111 1.8e-25 SWIRM domain
Myb_DNA-binding PF00249 247 - 285 2.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 939
AccII CGCG 1 cut(s) 1077
AciI CCGC 6 cut(s) 14, 419, 588, 939, 1148, 1266
AclWI GGATC 1 cut(s) 810
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 1 cut(s) 1251
AdeI CACNNNGTG 2 cut(s) 648, 1193
AfaI GTAC 3 cut(s) 182, 367, 701
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 8 cut(s) 37, 58, 90, 230, 567, 856, 1160, 1169
AluI AGCT 8 cut(s) 37, 58, 90, 230, 567, 856, 1160, 1169
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 974, 1266, 1274
AlwI GGATC 1 cut(s) 810
AlwNI CAGNNNCTG 1 cut(s) 1163
Ama87I CYCGRG 2 cut(s) 22, 370
AoxI GGCC 2 cut(s) 378, 462
ApeKI GCWGC 4 cut(s) 34, 286, 1166, 1175
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 421, 1055, 1145
AsuC2I CCSGG 3 cut(s) 23, 24, 382
AsuHPI GGTGA 6 cut(s) 238, 284, 359, 386, 560, 638
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 2 cut(s) 22, 370
AvaII GGWCC 3 cut(s) 421, 1055, 1145
BaeI ACNNNNGTAYC 2 cut(s) 1104, 1137
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 228, 1239
Bbv12I GWGCWC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 1170
BbvI GCAGC 4 cut(s) 46, 273, 1162, 1178
BccI CCATC 2 cut(s) 80, 143
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BcnI CCSGG 3 cut(s) 23, 24, 382
BcoDI GTCTC 3 cut(s) 974, 1266, 1274
BfaI CTAG 4 cut(s) 87, 231, 1098, 1343
BfmI CTRYAG 1 cut(s) 1164
BisI GCNGC 4 cut(s) 35, 287, 1167, 1176
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 4 cut(s) 36, 288, 1168, 1177
Bme1390I CCNGG 3 cut(s) 23, 24, 382
Bme18I GGWCC 3 cut(s) 421, 1055, 1145
BmeT110I CYCGRG 2 cut(s) 22, 370
BmgT120I GGNCC 3 cut(s) 421, 1055, 1145
BmiI GGNNCC 2 cut(s) 367, 1057
BmrFI CCNGG 3 cut(s) 23, 24, 382
BmsI GCATC 3 cut(s) 536, 1084, 1312
BpiI GAAGAC 2 cut(s) 228, 1239
BplI GAGNNNNNCTC 2 cut(s) 1187, 1219
BpmI CTGGAG 1 cut(s) 1311
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 955
BpuMI CCSGG 3 cut(s) 23, 24, 382
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 4 cut(s) 22, 369, 1051, 1137
BsaXI ACNNNNNCTCC 6 cut(s) 502, 532, 869, 899, 1309, 1339
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 512
Bse8I GATNNNNATC 1 cut(s) 801
BseDI CCNNGG 4 cut(s) 22, 369, 1051, 1137
BseGI GGATG 3 cut(s) 72, 109, 1099
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 3 cut(s) 111, 960, 1161
BseNI ACTGG 1 cut(s) 710
BseXI GCAGC 4 cut(s) 46, 273, 1162, 1178
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 2 cut(s) 380, 464
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 2 cut(s) 22, 370
BsiSI CCGG 2 cut(s) 23, 381
BslFI GGGAC 4 cut(s) 209, 395, 397, 1041
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 3 cut(s) 974, 1266, 1274
BsmFI GGGAC 4 cut(s) 209, 395, 397, 1041
BsnI GGCC 2 cut(s) 380, 464
BsoBI CYCGRG 2 cut(s) 22, 370
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 1 cut(s) 802
Bsp1720I GCTNAGC 1 cut(s) 852
BspACI CCGC 6 cut(s) 14, 419, 588, 939, 1148, 1266
BspANI GGCC 2 cut(s) 380, 464
BspCNI CTCAG 3 cut(s) 112, 961, 1162
BspFNI CGCG 1 cut(s) 1077
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 367, 1057
BspMAI CTGCAG 1 cut(s) 1168
BspPI GGATC 1 cut(s) 810
BspT104I TTCGAA 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 939
BsrDI GCAATG 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 710
BssECI CCNNGG 4 cut(s) 22, 369, 1051, 1137
BssMI GATC 1 cut(s) 802
BssT1I CCWWGG 2 cut(s) 1051, 1137
Bst4CI ACNGT 5 cut(s) 359, 391, 475, 485, 1025
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 1256
BstDEI CTNAG 5 cut(s) 120, 450, 852, 969, 1170
BstEII GGTNACC 1 cut(s) 908
BstF5I GGATG 3 cut(s) 72, 109, 1099
BstFNI CGCG 1 cut(s) 1077
BstKTI GATC 1 cut(s) 805
BstMAI GTCTC 3 cut(s) 974, 1266, 1274
BstMBI GATC 1 cut(s) 802
BstMWI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
BstPI GGTNACC 1 cut(s) 908
BstSCI CCNGG 3 cut(s) 21, 22, 380
BstSFI CTRYAG 1 cut(s) 1164
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 4 cut(s) 46, 273, 1162, 1178
BstV2I GAAGAC 2 cut(s) 228, 1239
BsuRI GGCC 2 cut(s) 380, 464
BtsCI GGATG 3 cut(s) 72, 109, 1099
BtsIMutI CAGTG 2 cut(s) 490, 1030
Cac8I GCNNGC 1 cut(s) 1256
CaiI CAGNNNCTG 1 cut(s) 1163
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 421, 1055, 1145
Cfr9I CCCGGG 1 cut(s) 22
CpoI CGGWCCG 1 cut(s) 421
CseI GACGC 1 cut(s) 1066
Csp6I GTAC 3 cut(s) 181, 366, 700
CspI CGGWCCG 1 cut(s) 421
CviAII CATG 4 cut(s) 113, 788, 1007, 1206
CviQI GTAC 3 cut(s) 181, 366, 700
DdeI CTNAG 5 cut(s) 120, 450, 852, 969, 1170
DpnI GATC 1 cut(s) 804
DpnII GATC 1 cut(s) 802
DraIII CACNNNGTG 2 cut(s) 648, 1193
EaeI YGGCCR 1 cut(s) 462
EciI GGCGGA 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 1051, 1137
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 3 cut(s) 421, 1055, 1145
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 1251
Eco88I CYCGRG 2 cut(s) 22, 370
Eco91I GGTNACC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 908
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 1051, 1137
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 2 cut(s) 1051, 1137
FaeI CATG 4 cut(s) 116, 791, 1010, 1209
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 4 cut(s) 209, 395, 397, 1041
FatI CATG 4 cut(s) 112, 787, 1006, 1205
FauI CCCGC 1 cut(s) 1273
Fnu4HI GCNGC 4 cut(s) 35, 287, 1167, 1176
FokI GGATG 3 cut(s) 59, 116, 1106
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 35, 287, 1167, 1176
FspBI CTAG 4 cut(s) 87, 231, 1098, 1343
GluI GCNGC 4 cut(s) 35, 287, 1167, 1176
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 1311
HaeIII GGCC 2 cut(s) 380, 464
HapII CCGG 2 cut(s) 23, 381
HgaI GACGC 1 cut(s) 1066
Hin1II CATG 4 cut(s) 116, 791, 1010, 1209
HincII GTYRAC 1 cut(s) 1134
HindII GTYRAC 1 cut(s) 1134
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 8 cut(s) 109, 253, 408, 446, 599, 749, 773, 997
HpaII CCGG 2 cut(s) 23, 381
HphI GGTGA 6 cut(s) 238, 284, 359, 386, 560, 638
Hpy166II GTNNAC 5 cut(s) 181, 481, 744, 1106, 1134
Hpy188I TCNGA 6 cut(s) 41, 425, 754, 970, 1002, 1093
Hpy188III TCNNGA 5 cut(s) 113, 165, 603, 977, 1328
Hpy8I GTNNAC 5 cut(s) 181, 481, 744, 1106, 1134
Hpy99I CGWCG 2 cut(s) 50, 1082
HpyAV CCTTC 3 cut(s) 130, 398, 679
HpyCH4III ACNGT 5 cut(s) 359, 391, 475, 485, 1025
HpyCH4V TGCA 9 cut(s) 11, 289, 434, 642, 782, 1046, 1166, 1187, 1258
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
HpyF3I CTNAG 5 cut(s) 120, 450, 852, 969, 1170
Hsp92II CATG 4 cut(s) 116, 791, 1010, 1209
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 1 cut(s) 802
LmnI GCTCC 2 cut(s) 42, 1330
Lsp1109I GCAGC 4 cut(s) 46, 273, 1162, 1178
LweI GCATC 3 cut(s) 536, 1084, 1312
MaeI CTAG 4 cut(s) 87, 231, 1098, 1343
MaeIII GTNAC 6 cut(s) 261, 277, 347, 896, 908, 1243
MalI GATC 1 cut(s) 804
MbiI CCGCTC 1 cut(s) 939
MboI GATC 1 cut(s) 802
MboII GAAGA 4 cut(s) 233, 568, 954, 1244
MfeI CAATTG 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
MluI ACGCGT 1 cut(s) 1075
MlyI GAGTC 2 cut(s) 417, 1006
MmeI TCCRAC 2 cut(s) 64, 1340
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 7 cut(s) 207, 327, 393, 822, 1182, 1224, 1347
MslI CAYNNNNRTG 2 cut(s) 792, 970
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 2 cut(s) 23, 381
MspR9I CCNGG 3 cut(s) 23, 24, 382
MunI CAATTG 1 cut(s) 580
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 8 cut(s) 87, 585, 927, 936, 1166, 1172, 1175, 1184
NciI CCSGG 3 cut(s) 23, 24, 382
NdeII GATC 1 cut(s) 802
NlaIII CATG 4 cut(s) 116, 791, 1010, 1209
NlaIV GGNNCC 2 cut(s) 367, 1057
NmuCI GTSAC 3 cut(s) 261, 347, 896
NspV TTCGAA 1 cut(s) 256
PagI TCATGA 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 6 cut(s) 109, 253, 446, 599, 749, 773
PkrI GCNGC 4 cut(s) 36, 288, 1168, 1177
PleI GAGTC 2 cut(s) 416, 1005
PpsI GAGTC 2 cut(s) 416, 1005
PpuMI RGGWCCY 1 cut(s) 1055
PshBI ATTAAT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 1055
PspEI GGTNACC 1 cut(s) 908
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 367, 1057
PspPI GGNCC 3 cut(s) 421, 1055, 1145
PspPPI RGGWCCY 1 cut(s) 1055
PstI CTGCAG 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 1163
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 3 cut(s) 182, 367, 701
RsaNI GTAC 3 cut(s) 181, 366, 700
RseI CAYNNNNRTG 2 cut(s) 792, 970
Rsr2I CGGWCCG 1 cut(s) 421
RsrII CGGWCCG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 7 cut(s) 207, 327, 393, 822, 1182, 1224, 1347
SatI GCNGC 4 cut(s) 35, 287, 1167, 1176
Sau3AI GATC 1 cut(s) 802
Sau96I GGNCC 3 cut(s) 421, 1055, 1145
SchI GAGTC 2 cut(s) 417, 1006
ScrFI CCNGG 3 cut(s) 23, 24, 382
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 3 cut(s) 536, 1084, 1312
SfcI CTRYAG 1 cut(s) 1164
SfuI TTCGAA 1 cut(s) 256
SinI GGWCC 3 cut(s) 421, 1055, 1145
SmaI CCCGGG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 792, 970
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
Sse9I AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
SsiI CCGC 6 cut(s) 14, 419, 588, 939, 1148, 1266
SspMI CTAG 4 cut(s) 87, 231, 1098, 1343
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 21, 22, 380
StyI CCWWGG 2 cut(s) 1051, 1137
TaaI ACNGT 5 cut(s) 359, 391, 475, 485, 1025
TaqI TCGA 4 cut(s) 60, 158, 256, 536
TasI AATT 7 cut(s) 126, 328, 507, 580, 680, 691, 1273
TatI WGTACW 2 cut(s) 180, 699
TfiI GAWTC 6 cut(s) 109, 253, 446, 599, 749, 773
Tru1I TTAA 7 cut(s) 207, 327, 393, 822, 1182, 1224, 1347
Tru9I TTAA 7 cut(s) 207, 327, 393, 822, 1182, 1224, 1347
TscAI CASTG 2 cut(s) 490, 1030
TseFI GTSAC 3 cut(s) 261, 347, 896
TseI GCWGC 4 cut(s) 34, 286, 1166, 1175
Tsp45I GTSAC 3 cut(s) 261, 347, 896
TspDTI ATGAA 3 cut(s) 101, 129, 954
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 2 cut(s) 490, 1030
VpaK11BI GGWCC 3 cut(s) 421, 1055, 1145
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 691
XmaI CCCGGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 4 cut(s) 87, 231, 1098, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.