SWI SNF complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47620 AT2G47620 |
| fragaria_vesca | FvH4_5g08750 FvH4_5g08750 |
| malus_domestica | MD06G1137800.v1.1 MD14G1152600.v1.1 |
| prunus_persica | Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1 |
| pyrus_communis | pycom06g12900 pycom14g12700 |
| rosa_chinensis | RchiOBHm_Chr7g0189531 |
| rosa_laevigata | RLG00000004603 |
| rosa_multiflora | Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001 |
| rosa_rugosa | Rorug06G0498800 |
| rosa_samantha | Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800 |
| rosa_wichuraiana | Rw7G008950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 365 |
| AccB1I | GGYRCC | 1 cut(s) | 365 |
| AccBSI | CCGCTC | 1 cut(s) | 939 |
| AccII | CGCG | 1 cut(s) | 1077 |
| AciI | CCGC | 6 cut(s) | 14, 419, 588, 939, 1148, 1266 |
| AclWI | GGATC | 1 cut(s) | 810 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcsI | RAATTY | 1 cut(s) | 691 |
| AcuI | CTGAAG | 1 cut(s) | 1251 |
| AdeI | CACNNNGTG | 2 cut(s) | 648, 1193 |
| AfaI | GTAC | 3 cut(s) | 182, 367, 701 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 418 |
| AflIII | ACRYGT | 1 cut(s) | 1075 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 551, 583 |
| AluBI | AGCT | 8 cut(s) | 37, 58, 90, 230, 567, 856, 1160, 1169 |
| AluI | AGCT | 8 cut(s) | 37, 58, 90, 230, 567, 856, 1160, 1169 |
| Alw21I | GWGCWC | 1 cut(s) | 60 |
| Alw26I | GTCTC | 3 cut(s) | 974, 1266, 1274 |
| AlwI | GGATC | 1 cut(s) | 810 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1163 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 370 |
| AoxI | GGCC | 2 cut(s) | 378, 462 |
| ApeKI | GCWGC | 4 cut(s) | 34, 286, 1166, 1175 |
| ApoI | RAATTY | 1 cut(s) | 691 |
| AseI | ATTAAT | 1 cut(s) | 327 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| Asp718I | GGTACC | 1 cut(s) | 365 |
| AspS9I | GGNCC | 3 cut(s) | 421, 1055, 1145 |
| AsuC2I | CCSGG | 3 cut(s) | 23, 24, 382 |
| AsuHPI | GGTGA | 6 cut(s) | 238, 284, 359, 386, 560, 638 |
| AsuII | TTCGAA | 1 cut(s) | 256 |
| AvaI | CYCGRG | 2 cut(s) | 22, 370 |
| AvaII | GGWCC | 3 cut(s) | 421, 1055, 1145 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1104, 1137 |
| BanI | GGYRCC | 1 cut(s) | 365 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| BbsI | GAAGAC | 2 cut(s) | 228, 1239 |
| Bbv12I | GWGCWC | 1 cut(s) | 60 |
| BbvCI | CCTCAGC | 1 cut(s) | 1170 |
| BbvI | GCAGC | 4 cut(s) | 46, 273, 1162, 1178 |
| BccI | CCATC | 2 cut(s) | 80, 143 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 516, 550 |
| BcnI | CCSGG | 3 cut(s) | 23, 24, 382 |
| BcoDI | GTCTC | 3 cut(s) | 974, 1266, 1274 |
| BfaI | CTAG | 4 cut(s) | 87, 231, 1098, 1343 |
| BfmI | CTRYAG | 1 cut(s) | 1164 |
| BisI | GCNGC | 4 cut(s) | 35, 287, 1167, 1176 |
| BlpI | GCTNAGC | 1 cut(s) | 852 |
| BlsI | GCNGC | 4 cut(s) | 36, 288, 1168, 1177 |
| Bme1390I | CCNGG | 3 cut(s) | 23, 24, 382 |
| Bme18I | GGWCC | 3 cut(s) | 421, 1055, 1145 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 370 |
| BmgT120I | GGNCC | 3 cut(s) | 421, 1055, 1145 |
| BmiI | GGNNCC | 2 cut(s) | 367, 1057 |
| BmrFI | CCNGG | 3 cut(s) | 23, 24, 382 |
| BmsI | GCATC | 3 cut(s) | 536, 1084, 1312 |
| BpiI | GAAGAC | 2 cut(s) | 228, 1239 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1187, 1219 |
| BpmI | CTGGAG | 1 cut(s) | 1311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1170 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 852 |
| Bpu14I | TTCGAA | 1 cut(s) | 256 |
| BpuEI | CTTGAG | 1 cut(s) | 955 |
| BpuMI | CCSGG | 3 cut(s) | 23, 24, 382 |
| BsaBI | GATNNNNATC | 1 cut(s) | 801 |
| BsaJI | CCNNGG | 4 cut(s) | 22, 369, 1051, 1137 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 502, 532, 869, 899, 1309, 1339 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 418 |
| Bse1I | ACTGG | 1 cut(s) | 710 |
| Bse3DI | GCAATG | 1 cut(s) | 512 |
| Bse8I | GATNNNNATC | 1 cut(s) | 801 |
| BseDI | CCNNGG | 4 cut(s) | 22, 369, 1051, 1137 |
| BseGI | GGATG | 3 cut(s) | 72, 109, 1099 |
| BseJI | GATNNNNATC | 1 cut(s) | 801 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BseMI | GCAATG | 1 cut(s) | 512 |
| BseMII | CTCAG | 3 cut(s) | 111, 960, 1161 |
| BseNI | ACTGG | 1 cut(s) | 710 |
| BseXI | GCAGC | 4 cut(s) | 46, 273, 1162, 1178 |
| BseYI | CCCAGC | 1 cut(s) | 226 |
| BsgI | GTGCAG | 1 cut(s) | 272 |
| Bsh1236I | CGCG | 1 cut(s) | 1077 |
| BshFI | GGCC | 2 cut(s) | 380, 464 |
| BshNI | GGYRCC | 1 cut(s) | 365 |
| BsiHKAI | GWGCWC | 1 cut(s) | 60 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 370 |
| BsiSI | CCGG | 2 cut(s) | 23, 381 |
| BslFI | GGGAC | 4 cut(s) | 209, 395, 397, 1041 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BsmAI | GTCTC | 3 cut(s) | 974, 1266, 1274 |
| BsmFI | GGGAC | 4 cut(s) | 209, 395, 397, 1041 |
| BsnI | GGCC | 2 cut(s) | 380, 464 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 370 |
| Bsp119I | TTCGAA | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 180 |
| Bsp143I | GATC | 1 cut(s) | 802 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 852 |
| BspACI | CCGC | 6 cut(s) | 14, 419, 588, 939, 1148, 1266 |
| BspANI | GGCC | 2 cut(s) | 380, 464 |
| BspCNI | CTCAG | 3 cut(s) | 112, 961, 1162 |
| BspFNI | CGCG | 1 cut(s) | 1077 |
| BspHI | TCATGA | 1 cut(s) | 112 |
| BspLI | GGNNCC | 2 cut(s) | 367, 1057 |
| BspMAI | CTGCAG | 1 cut(s) | 1168 |
| BspPI | GGATC | 1 cut(s) | 810 |
| BspT104I | TTCGAA | 1 cut(s) | 256 |
| BspT107I | GGYRCC | 1 cut(s) | 365 |
| BsrBI | CCGCTC | 1 cut(s) | 939 |
| BsrDI | GCAATG | 1 cut(s) | 512 |
| BsrGI | TGTACA | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 710 |
| BssECI | CCNNGG | 4 cut(s) | 22, 369, 1051, 1137 |
| BssMI | GATC | 1 cut(s) | 802 |
| BssT1I | CCWWGG | 2 cut(s) | 1051, 1137 |
| Bst4CI | ACNGT | 5 cut(s) | 359, 391, 475, 485, 1025 |
| BstAUI | TGTACA | 1 cut(s) | 180 |
| BstBI | TTCGAA | 1 cut(s) | 256 |
| BstC8I | GCNNGC | 1 cut(s) | 1256 |
| BstDEI | CTNAG | 5 cut(s) | 120, 450, 852, 969, 1170 |
| BstEII | GGTNACC | 1 cut(s) | 908 |
| BstF5I | GGATG | 3 cut(s) | 72, 109, 1099 |
| BstFNI | CGCG | 1 cut(s) | 1077 |
| BstKTI | GATC | 1 cut(s) | 805 |
| BstMAI | GTCTC | 3 cut(s) | 974, 1266, 1274 |
| BstMBI | GATC | 1 cut(s) | 802 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 87, 585, 927, 936, 1166, 1172, 1175, 1184 |
| BstPI | GGTNACC | 1 cut(s) | 908 |
| BstSCI | CCNGG | 3 cut(s) | 21, 22, 380 |
| BstSFI | CTRYAG | 1 cut(s) | 1164 |
| BstUI | CGCG | 1 cut(s) | 1077 |
| BstV1I | GCAGC | 4 cut(s) | 46, 273, 1162, 1178 |
| BstV2I | GAAGAC | 2 cut(s) | 228, 1239 |
| BsuRI | GGCC | 2 cut(s) | 380, 464 |
| BtsCI | GGATG | 3 cut(s) | 72, 109, 1099 |
| BtsIMutI | CAGTG | 2 cut(s) | 490, 1030 |
| Cac8I | GCNNGC | 1 cut(s) | 1256 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1163 |
| CciI | TCATGA | 1 cut(s) | 112 |
| Cfr13I | GGNCC | 3 cut(s) | 421, 1055, 1145 |
| Cfr9I | CCCGGG | 1 cut(s) | 22 |
| CpoI | CGGWCCG | 1 cut(s) | 421 |
| CseI | GACGC | 1 cut(s) | 1066 |
| Csp6I | GTAC | 3 cut(s) | 181, 366, 700 |
| CspI | CGGWCCG | 1 cut(s) | 421 |
| CviAII | CATG | 4 cut(s) | 113, 788, 1007, 1206 |
| CviQI | GTAC | 3 cut(s) | 181, 366, 700 |
| DdeI | CTNAG | 5 cut(s) | 120, 450, 852, 969, 1170 |
| DpnI | GATC | 1 cut(s) | 804 |
| DpnII | GATC | 1 cut(s) | 802 |
| DraIII | CACNNNGTG | 2 cut(s) | 648, 1193 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| EciI | GGCGGA | 1 cut(s) | 603 |
| Ecl136II | GAGCTC | 1 cut(s) | 58 |
| Eco130I | CCWWGG | 2 cut(s) | 1051, 1137 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco32I | GATATC | 1 cut(s) | 162 |
| Eco47I | GGWCC | 3 cut(s) | 421, 1055, 1145 |
| Eco53kI | GAGCTC | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 1 cut(s) | 1251 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 370 |
| Eco91I | GGTNACC | 1 cut(s) | 908 |
| EcoICRI | GAGCTC | 1 cut(s) | 58 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1055 |
| EcoO65I | GGTNACC | 1 cut(s) | 908 |
| EcoRV | GATATC | 1 cut(s) | 162 |
| EcoT14I | CCWWGG | 2 cut(s) | 1051, 1137 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| ErhI | CCWWGG | 2 cut(s) | 1051, 1137 |
| FaeI | CATG | 4 cut(s) | 116, 791, 1010, 1209 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 128, 160 |
| FaqI | GGGAC | 4 cut(s) | 209, 395, 397, 1041 |
| FatI | CATG | 4 cut(s) | 112, 787, 1006, 1205 |
| FauI | CCCGC | 1 cut(s) | 1273 |
| Fnu4HI | GCNGC | 4 cut(s) | 35, 287, 1167, 1176 |
| FokI | GGATG | 3 cut(s) | 59, 116, 1106 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 4 cut(s) | 35, 287, 1167, 1176 |
| FspBI | CTAG | 4 cut(s) | 87, 231, 1098, 1343 |
| GluI | GCNGC | 4 cut(s) | 35, 287, 1167, 1176 |
| GsaI | CCCAGC | 1 cut(s) | 230 |
| GsuI | CTGGAG | 1 cut(s) | 1311 |
| HaeIII | GGCC | 2 cut(s) | 380, 464 |
| HapII | CCGG | 2 cut(s) | 23, 381 |
| HgaI | GACGC | 1 cut(s) | 1066 |
| Hin1II | CATG | 4 cut(s) | 116, 791, 1010, 1209 |
| HincII | GTYRAC | 1 cut(s) | 1134 |
| HindII | GTYRAC | 1 cut(s) | 1134 |
| HindIII | AAGCTT | 1 cut(s) | 854 |
| HinfI | GANTC | 8 cut(s) | 109, 253, 408, 446, 599, 749, 773, 997 |
| HpaII | CCGG | 2 cut(s) | 23, 381 |
| HphI | GGTGA | 6 cut(s) | 238, 284, 359, 386, 560, 638 |
| Hpy166II | GTNNAC | 5 cut(s) | 181, 481, 744, 1106, 1134 |
| Hpy188I | TCNGA | 6 cut(s) | 41, 425, 754, 970, 1002, 1093 |
| Hpy188III | TCNNGA | 5 cut(s) | 113, 165, 603, 977, 1328 |
| Hpy8I | GTNNAC | 5 cut(s) | 181, 481, 744, 1106, 1134 |
| Hpy99I | CGWCG | 2 cut(s) | 50, 1082 |
| HpyAV | CCTTC | 3 cut(s) | 130, 398, 679 |
| HpyCH4III | ACNGT | 5 cut(s) | 359, 391, 475, 485, 1025 |
| HpyCH4V | TGCA | 9 cut(s) | 11, 289, 434, 642, 782, 1046, 1166, 1187, 1258 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 87, 585, 927, 936, 1166, 1172, 1175, 1184 |
| HpyF3I | CTNAG | 5 cut(s) | 120, 450, 852, 969, 1170 |
| Hsp92II | CATG | 4 cut(s) | 116, 791, 1010, 1209 |
| KpnI | GGTACC | 1 cut(s) | 369 |
| Kzo9I | GATC | 1 cut(s) | 802 |
| LmnI | GCTCC | 2 cut(s) | 42, 1330 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 273, 1162, 1178 |
| LweI | GCATC | 3 cut(s) | 536, 1084, 1312 |
| MaeI | CTAG | 4 cut(s) | 87, 231, 1098, 1343 |
| MaeIII | GTNAC | 6 cut(s) | 261, 277, 347, 896, 908, 1243 |
| MalI | GATC | 1 cut(s) | 804 |
| MbiI | CCGCTC | 1 cut(s) | 939 |
| MboI | GATC | 1 cut(s) | 802 |
| MboII | GAAGA | 4 cut(s) | 233, 568, 954, 1244 |
| MfeI | CAATTG | 1 cut(s) | 580 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MluCI | AATT | 7 cut(s) | 126, 328, 507, 580, 680, 691, 1273 |
| MluI | ACGCGT | 1 cut(s) | 1075 |
| MlyI | GAGTC | 2 cut(s) | 417, 1006 |
| MmeI | TCCRAC | 2 cut(s) | 64, 1340 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MseI | TTAA | 7 cut(s) | 207, 327, 393, 822, 1182, 1224, 1347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 792, 970 |
| MspA1I | CMGCKG | 1 cut(s) | 1169 |
| MspI | CCGG | 2 cut(s) | 23, 381 |
| MspR9I | CCNGG | 3 cut(s) | 23, 24, 382 |
| MunI | CAATTG | 1 cut(s) | 580 |
| MvnI | CGCG | 1 cut(s) | 1077 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 87, 585, 927, 936, 1166, 1172, 1175, 1184 |
| NciI | CCSGG | 3 cut(s) | 23, 24, 382 |
| NdeII | GATC | 1 cut(s) | 802 |
| NlaIII | CATG | 4 cut(s) | 116, 791, 1010, 1209 |
| NlaIV | GGNNCC | 2 cut(s) | 367, 1057 |
| NmuCI | GTSAC | 3 cut(s) | 261, 347, 896 |
| NspV | TTCGAA | 1 cut(s) | 256 |
| PagI | TCATGA | 1 cut(s) | 112 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| PfeI | GAWTC | 6 cut(s) | 109, 253, 446, 599, 749, 773 |
| PkrI | GCNGC | 4 cut(s) | 36, 288, 1168, 1177 |
| PleI | GAGTC | 2 cut(s) | 416, 1005 |
| PpsI | GAGTC | 2 cut(s) | 416, 1005 |
| PpuMI | RGGWCCY | 1 cut(s) | 1055 |
| PshBI | ATTAAT | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 60 |
| Psp5II | RGGWCCY | 1 cut(s) | 1055 |
| PspEI | GGTNACC | 1 cut(s) | 908 |
| PspFI | CCCAGC | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 2 cut(s) | 367, 1057 |
| PspPI | GGNCC | 3 cut(s) | 421, 1055, 1145 |
| PspPPI | RGGWCCY | 1 cut(s) | 1055 |
| PstI | CTGCAG | 1 cut(s) | 1168 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1163 |
| PvuII | CAGCTG | 1 cut(s) | 1169 |
| RsaI | GTAC | 3 cut(s) | 182, 367, 701 |
| RsaNI | GTAC | 3 cut(s) | 181, 366, 700 |
| RseI | CAYNNNNRTG | 2 cut(s) | 792, 970 |
| Rsr2I | CGGWCCG | 1 cut(s) | 421 |
| RsrII | CGGWCCG | 1 cut(s) | 421 |
| SacI | GAGCTC | 1 cut(s) | 60 |
| SaqAI | TTAA | 7 cut(s) | 207, 327, 393, 822, 1182, 1224, 1347 |
| SatI | GCNGC | 4 cut(s) | 35, 287, 1167, 1176 |
| Sau3AI | GATC | 1 cut(s) | 802 |
| Sau96I | GGNCC | 3 cut(s) | 421, 1055, 1145 |
| SchI | GAGTC | 2 cut(s) | 417, 1006 |
| ScrFI | CCNGG | 3 cut(s) | 23, 24, 382 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SfaNI | GCATC | 3 cut(s) | 536, 1084, 1312 |
| SfcI | CTRYAG | 1 cut(s) | 1164 |
| SfuI | TTCGAA | 1 cut(s) | 256 |
| SinI | GGWCC | 3 cut(s) | 421, 1055, 1145 |
| SmaI | CCCGGG | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 792, 970 |
| SmlI | CTYRAG | 1 cut(s) | 934 |
| SmoI | CTYRAG | 1 cut(s) | 934 |
| Sse9I | AATT | 7 cut(s) | 126, 328, 507, 580, 680, 691, 1273 |
| SsiI | CCGC | 6 cut(s) | 14, 419, 588, 939, 1148, 1266 |
| SspMI | CTAG | 4 cut(s) | 87, 231, 1098, 1343 |
| SstI | GAGCTC | 1 cut(s) | 60 |
| StyD4I | CCNGG | 3 cut(s) | 21, 22, 380 |
| StyI | CCWWGG | 2 cut(s) | 1051, 1137 |
| TaaI | ACNGT | 5 cut(s) | 359, 391, 475, 485, 1025 |
| TaqI | TCGA | 4 cut(s) | 60, 158, 256, 536 |
| TasI | AATT | 7 cut(s) | 126, 328, 507, 580, 680, 691, 1273 |
| TatI | WGTACW | 2 cut(s) | 180, 699 |
| TfiI | GAWTC | 6 cut(s) | 109, 253, 446, 599, 749, 773 |
| Tru1I | TTAA | 7 cut(s) | 207, 327, 393, 822, 1182, 1224, 1347 |
| Tru9I | TTAA | 7 cut(s) | 207, 327, 393, 822, 1182, 1224, 1347 |
| TscAI | CASTG | 2 cut(s) | 490, 1030 |
| TseFI | GTSAC | 3 cut(s) | 261, 347, 896 |
| TseI | GCWGC | 4 cut(s) | 34, 286, 1166, 1175 |
| Tsp45I | GTSAC | 3 cut(s) | 261, 347, 896 |
| TspDTI | ATGAA | 3 cut(s) | 101, 129, 954 |
| TspMI | CCCGGG | 1 cut(s) | 22 |
| TspRI | CASTG | 2 cut(s) | 490, 1030 |
| VpaK11BI | GGWCC | 3 cut(s) | 421, 1055, 1145 |
| VspI | ATTAAT | 1 cut(s) | 327 |
| XapI | RAATTY | 1 cut(s) | 691 |
| XmaI | CCCGGG | 1 cut(s) | 22 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |
| XspI | CTAG | 4 cut(s) | 87, 231, 1098, 1343 |