Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009639.1

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Forward (+)

46833 .. 48775

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009639.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggaggccacgatgcccatttgcaagactgttactccaactccgaatgatgttgtccatgctattgtcaaagaagctgaggtagacaacaaacagagggccgaaaatgtctcatctcagaaacagaagttggtttgtatcaattgtggcggacattgcgattctggacaccactggtataacaagggtgattttctactttgcacaaagtgtttagcaaatggaaactatgagaagaacaaattgaaggtagatttcaagtataacgagccagttgaaaagagtactggagttgagtggactgaatcagaaatttcttttaactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

6.06

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	247, 259, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	6, 99
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 25, 49, 55
Bse1I	ACTGG	3 cut(s)	179, 272, 292
Bse3DI	GCAATG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	69, 131
BseNI	ACTGG	3 cut(s)	179, 272, 292
BshFI	GGCC	2 cut(s)	8, 101
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	8, 101
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	8, 101
BspCNI	CTCAG	2 cut(s)	70, 130
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	179, 272, 292
Bst4CI	ACNGT	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	78, 117
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	8, 101
BtsIMutI	CAGTG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	4 cut(s)	8, 77, 101, 271
CviKI_1	RGCY	4 cut(s)	8, 77, 101, 271
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	78, 117
DraIII	CACNNNGTG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	165
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 180, 231, 264
FatI	CATG	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	8, 101
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	2 cut(s)	161, 305
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	85, 300
Hpy188I	TCNGA	3 cut(s)	45, 120, 310
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	85, 300
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	24, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	78, 117
Hsp92II	CATG	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	150, 160, 273, 285
LweI	GCATC	1 cut(s)	3
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	142
MluCI	AATT	3 cut(s)	142, 242, 312
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	73, 90
MseI	TTAA	1 cut(s)	321
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	161, 305
PspPI	GGNCC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	99
ScaI	AGTACT	1 cut(s)	286
SetI	ASST	3 cut(s)	79, 84, 252
SfaNI	GCATC	1 cut(s)	3
Sse9I	AATT	3 cut(s)	142, 242, 312
SsiI	CCGC	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	3 cut(s)	142, 242, 312
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	161, 305
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	179
TspRI	CASTG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.