Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001924.1

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Forward (+)

61570 .. 64288

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001924.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggaacttgcaccgcacgacccgggttcaaagcagctccgacccgacgaaccagagctcgacctctacaccatcccaagccactctagctggtttttgtgggatgagattcatgaaactgagagaattgctttgaaggagttctttgatgggaggtcgatatcaagaacaccaaaggtgtacaaagaatatagggactttattattaacaagtatagagaagacccagctagaaaactcacattcaccgagattcgaaagtcacttgtgggtgatgttactttgctgcacaagaaagagagcttggtttgtggcaattgtggtggacattgtgattctggacactacaagtataataagggtgactttctactttgcacaaagtgttttgaaaatggaaactatggggagaacaaattgaaggaaaatttcaagtacaacgagccagttgaaaagagtagtaatatgggagttgagtggactgaatcagaaactttacttcttttagattcagttgcaaaacatggagatgattgggatcgtgttactcaaaatgttaagaccaagaccaaagttgattgtattgctaagcttattgatttgccttttggggaggttgtgttgggttctggtcacagaaaaggtaaccatagtggctttagtggcaacttgagcggttcaaaacaaggtcagttatcttcatctgagtgtcaagagactatcaaaaccaagagtcagagccatgagcagacaaatgacagtgagcagaatggagatactgcaaaccaaggtccccctttgaaaaaacaacgcgtcgcttccctctcggatgctagtagttcacttattacacaggtatctgccttgtcaaccttggttggtccgcatattacagcttctgcagctgaggctgctgttaatgcactttgtgaggaaacctcatgttcaaaggagatatttaatgctgaagacgattgtgttactaatggcttgcagtctcccgctataaattgtgagacagagagagtccttcaacttgaagattcagagatgaaggaaaggccaactgaatcagcgggtcaggatgcgtttataaaaaaagatgacatacctccaactttgcaaattagagctgccatcgcaacaggtcttggagcagctgctgctcgtgccaaattactggctgatcaggaggatagagagattgaacatcttttggcaaccataatagggacacagatgaagaagttgcactgcaaaatcaagaccgtcgaagaactggatctgcttatggagaaggaatacgcagaaatggaagaagaagaagattctctgctagaagagcgaattgacatcatacaaaagacactcgactctggcgtacctagatggagggatcatcctcctgtaaaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

472

Amino Acids

52.63

Weight (kDa)

5.14

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
AccBSI	CCGCTC	1 cut(s)	675
AccII	CGCG	1 cut(s)	813
AciI	CCGC	5 cut(s)	14, 675, 884, 1002, 1076
AclWI	GGATC	3 cut(s)	546, 1290, 1404
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	987
AdeI	CACNNNGTG	2 cut(s)	384, 929
AfaI	GTAC	3 cut(s)	182, 437, 1383
AfiI	CCNNNNNNNGG	1 cut(s)	1230
AflIII	ACRYGT	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	710, 1002, 1010
AlwI	GGATC	3 cut(s)	546, 1290, 1404
AlwNI	CAGNNNCTG	2 cut(s)	899, 1163
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	1061
ApeKI	GCWGC	8 cut(s)	34, 286, 902, 911, 1133, 1157, 1160, 1163
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	791, 881
AsuC2I	CCSGG	2 cut(s)	23, 24
AsuHPI	GGTGA	3 cut(s)	238, 284, 374
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	791, 881
BaeI	ACNNNNGTAYC	2 cut(s)	840, 873
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	1167
BbsI	GAAGAC	2 cut(s)	228, 975
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	8 cut(s)	46, 273, 898, 914, 1120, 1147, 1150, 1169
BccI	CCATC	4 cut(s)	80, 143, 1145, 1383
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	2 cut(s)	23, 24
BcoDI	GTCTC	3 cut(s)	710, 1002, 1010
BfaI	CTAG	5 cut(s)	87, 231, 834, 1337, 1386
BfmI	CTRYAG	1 cut(s)	900
BisI	GCNGC	8 cut(s)	35, 287, 903, 912, 1134, 1158, 1161, 1164
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	8 cut(s)	36, 288, 904, 913, 1135, 1159, 1162, 1165
Bme1390I	CCNGG	2 cut(s)	23, 24
Bme18I	GGWCC	2 cut(s)	791, 881
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	791, 881
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	2 cut(s)	23, 24
BmsI	GCATC	2 cut(s)	820, 1075
BpiI	GAAGAC	2 cut(s)	228, 975
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	691
BpuMI	CCSGG	2 cut(s)	23, 24
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	22, 787, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	1230
Bse1I	ACTGG	3 cut(s)	446, 1185, 1284
Bse8I	GATNNNNATC	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	22, 787, 873
BseGI	GGATG	5 cut(s)	72, 109, 835, 1090, 1399
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	1230
BseMII	CTCAG	3 cut(s)	111, 696, 897
BseNI	ACTGG	3 cut(s)	446, 1185, 1284
BseXI	GCAGC	8 cut(s)	46, 273, 898, 914, 1120, 1147, 1150, 1169
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	1063
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	3 cut(s)	209, 777, 1246
BslI	CCNNNNNNNGG	1 cut(s)	1230
BsmAI	GTCTC	3 cut(s)	710, 1002, 1010
BsmFI	GGGAC	3 cut(s)	209, 777, 1246
BsnI	GGCC	1 cut(s)	1063
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	538, 1186, 1282, 1396
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	5 cut(s)	14, 675, 884, 1002, 1076
BspANI	GGCC	1 cut(s)	1063
BspCNI	CTCAG	3 cut(s)	112, 697, 898
BspFNI	CGCG	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	3 cut(s)	546, 1290, 1404
BspQI	GCTCTTC	1 cut(s)	1335
BspT104I	TTCGAA	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	446, 1185, 1284
BssECI	CCNNGG	3 cut(s)	22, 787, 873
BssMI	GATC	4 cut(s)	538, 1186, 1282, 1396
BssSI	CACGAG	1 cut(s)	1167
BssT1I	CCWWGG	2 cut(s)	787, 873
Bst2BI	CACGAG	1 cut(s)	1167
Bst4CI	ACNGT	2 cut(s)	761, 1270
Bst6I	CTCTTC	1 cut(s)	1335
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstAUI	TGTACA	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	992
BstDEI	CTNAG	4 cut(s)	120, 588, 705, 906
BstEII	GGTNACC	1 cut(s)	644
BstF5I	GGATG	5 cut(s)	72, 109, 835, 1090, 1399
BstFNI	CGCG	1 cut(s)	813
BstKTI	GATC	4 cut(s)	541, 1189, 1285, 1399
BstMAI	GTCTC	3 cut(s)	710, 1002, 1010
BstMBI	GATC	4 cut(s)	538, 1186, 1282, 1396
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	21, 22
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	8 cut(s)	46, 273, 898, 914, 1120, 1147, 1150, 1169
BstV2I	GAAGAC	2 cut(s)	228, 975
BstX2I	RGATCY	1 cut(s)	1282
BstXI	CCANNNNNNTGG	1 cut(s)	1180
BstYI	RGATCY	1 cut(s)	1282
BsuRI	GGCC	1 cut(s)	1063
BtgZI	GCGATG	1 cut(s)	1123
BtsCI	GGATG	5 cut(s)	72, 109, 835, 1090, 1399
BtsI	GCAGTG	1 cut(s)	1252
BtsIMutI	CAGTG	2 cut(s)	766, 1252
Cac8I	GCNNGC	1 cut(s)	992
CaiI	CAGNNNCTG	2 cut(s)	899, 1163
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	791, 881
Cfr9I	CCCGGG	1 cut(s)	22
CseI	GACGC	1 cut(s)	802
Csp6I	GTAC	3 cut(s)	181, 436, 1382
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	113, 524, 743, 942
CviQI	GTAC	3 cut(s)	181, 436, 1382
DdeI	CTNAG	4 cut(s)	120, 588, 705, 906
DpnI	GATC	4 cut(s)	540, 1188, 1284, 1398
DpnII	GATC	4 cut(s)	538, 1186, 1282, 1396
DraIII	CACNNNGTG	2 cut(s)	384, 929
Eam1104I	CTCTTC	1 cut(s)	1335
EarI	CTCTTC	1 cut(s)	1335
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	787, 873
Eco24I	GRGCYC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	791, 881
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	987
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	787, 873
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	787, 873
FaeI	CATG	4 cut(s)	116, 527, 746, 945
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 350, 382
FaqI	GGGAC	3 cut(s)	209, 777, 1246
FatI	CATG	4 cut(s)	112, 523, 742, 941
FauI	CCCGC	2 cut(s)	1009, 1069
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	8 cut(s)	35, 287, 903, 912, 1134, 1158, 1161, 1164
FokI	GGATG	5 cut(s)	59, 116, 842, 1097, 1386
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	8 cut(s)	35, 287, 903, 912, 1134, 1158, 1161, 1164
FspBI	CTAG	5 cut(s)	87, 231, 834, 1337, 1386
GluI	GCNGC	8 cut(s)	35, 287, 903, 912, 1134, 1158, 1161, 1164
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	1063
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	802
Hin1II	CATG	4 cut(s)	116, 527, 746, 945
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	590
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	238, 284, 374
Hpy166II	GTNNAC	5 cut(s)	181, 326, 480, 842, 870
Hpy188I	TCNGA	6 cut(s)	41, 490, 706, 738, 829, 1048
Hpy188III	TCNNGA	8 cut(s)	113, 165, 339, 713, 1082, 1190, 1264, 1416
Hpy8I	GTNNAC	5 cut(s)	181, 326, 480, 842, 870
Hpy99I	CGWCG	3 cut(s)	50, 818, 1274
HpyAV	CCTTC	5 cut(s)	130, 415, 1040, 1048, 1291
HpyCH4III	ACNGT	2 cut(s)	761, 1270
HpyF3I	CTNAG	4 cut(s)	120, 588, 705, 906
Hsp92II	CATG	4 cut(s)	116, 527, 746, 945
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	4 cut(s)	538, 1186, 1282, 1396
LguI	GCTCTTC	1 cut(s)	1335
LmnI	GCTCC	2 cut(s)	42, 1154
Lsp1109I	GCAGC	8 cut(s)	46, 273, 898, 914, 1120, 1147, 1150, 1169
LweI	GCATC	2 cut(s)	820, 1075
MaeI	CTAG	5 cut(s)	87, 231, 834, 1337, 1386
MaeIII	GTNAC	7 cut(s)	261, 277, 362, 544, 632, 644, 979
MalI	GATC	4 cut(s)	540, 1188, 1284, 1398
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	4 cut(s)	538, 1186, 1282, 1396
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	1 cut(s)	1282
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	8 cut(s)	126, 316, 416, 427, 1009, 1125, 1175, 1347
MluI	ACGCGT	1 cut(s)	811
MlyI	GAGTC	3 cut(s)	742, 1035, 1367
MmeI	TCCRAC	2 cut(s)	64, 1139
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	4 cut(s)	207, 558, 918, 960
MslI	CAYNNNNRTG	2 cut(s)	528, 706
MspA1I	CMGCKG	3 cut(s)	905, 1076, 1160
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	23, 24
MunI	CAATTG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	813
NciI	CCSGG	2 cut(s)	23, 24
NdeII	GATC	4 cut(s)	538, 1186, 1282, 1396
NlaIII	CATG	4 cut(s)	116, 527, 746, 945
NlaIV	GGNNCC	1 cut(s)	793
NmuCI	GTSAC	3 cut(s)	261, 362, 632
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	1335
PcsI	WCGNNNNNNNCGW	1 cut(s)	1377
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	8 cut(s)	109, 253, 335, 485, 509, 1043, 1070, 1328
PkrI	GCNGC	8 cut(s)	36, 288, 904, 913, 1135, 1159, 1162, 1165
PleI	GAGTC	3 cut(s)	741, 1034, 1367
PpsI	GAGTC	3 cut(s)	741, 1034, 1367
PpuMI	RGGWCCY	1 cut(s)	791
PsiI	TTATAA	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	2 cut(s)	791, 881
PspPPI	RGGWCCY	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	904
PstNI	CAGNNNCTG	2 cut(s)	899, 1163
PsuI	RGATCY	1 cut(s)	1282
PvuII	CAGCTG	2 cut(s)	905, 1160
RsaI	GTAC	3 cut(s)	182, 437, 1383
RsaNI	GTAC	3 cut(s)	181, 436, 1382
RseI	CAYNNNNRTG	2 cut(s)	528, 706
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	1335
SaqAI	TTAA	4 cut(s)	207, 558, 918, 960
SatI	GCNGC	8 cut(s)	35, 287, 903, 912, 1134, 1158, 1161, 1164
Sau3AI	GATC	4 cut(s)	538, 1186, 1282, 1396
Sau96I	GGNCC	2 cut(s)	791, 881
SchI	GAGTC	3 cut(s)	742, 1035, 1367
ScrFI	CCNGG	2 cut(s)	23, 24
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	2 cut(s)	820, 1075
SfcI	CTRYAG	1 cut(s)	900
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	2 cut(s)	791, 881
SmaI	CCCGGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	528, 706
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	8 cut(s)	126, 316, 416, 427, 1009, 1125, 1175, 1347
SsiI	CCGC	5 cut(s)	14, 675, 884, 1002, 1076
SspMI	CTAG	5 cut(s)	87, 231, 834, 1337, 1386
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	21, 22
StyI	CCWWGG	2 cut(s)	787, 873
TaaI	ACNGT	2 cut(s)	761, 1270
TaqI	TCGA	5 cut(s)	60, 158, 256, 1272, 1371
TasI	AATT	8 cut(s)	126, 316, 416, 427, 1009, 1125, 1175, 1347
TatI	WGTACW	2 cut(s)	180, 435
TfiI	GAWTC	8 cut(s)	109, 253, 335, 485, 509, 1043, 1070, 1328
Tru1I	TTAA	4 cut(s)	207, 558, 918, 960
Tru9I	TTAA	4 cut(s)	207, 558, 918, 960
TscAI	CASTG	2 cut(s)	766, 1259
TseFI	GTSAC	3 cut(s)	261, 362, 632
TseI	GCWGC	8 cut(s)	34, 286, 902, 911, 1133, 1157, 1160, 1163
Tsp45I	GTSAC	3 cut(s)	261, 362, 632
TspDTI	ATGAA	5 cut(s)	101, 129, 690, 1067, 1256
TspMI	CCCGGG	1 cut(s)	22
TspRI	CASTG	2 cut(s)	766, 1259
VpaK11BI	GGWCC	2 cut(s)	791, 881
XapI	RAATTY	1 cut(s)	427
XmaI	CCCGGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	5 cut(s)	87, 231, 834, 1337, 1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.