Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Reverse (-)

5017590 .. 5020804

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08750.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGAACATGACCCGGGTTCAAAGCAGCTCCGACCCGACGAACCAGAGCTCGACCTCTACACCATCCCAAGCCACACTAGCTGGTTTTTGTGGGATGAGATTCATGAAACTGAGAAAAAAGGTTTGAAGGAGTTTTTTGATGGGAGGTCTATATCAAGAACACCAAAGGTGTACAAAGAGTATAGGGATTTTATTATTAACAAGTATAGAGAAGACCCTGCTAGAAAGCTCACATTCACCGAGATTCGGAAGTCGCTTGTGGGTGATGTTACTTTGCTGCACAAGGTCTTTAATTTCTTGGAAAAATGGGGGTTGATTAATTTTGGTGCAACTTTGGGGCGCAATGATGGTTTTGGTGAGGCCAGGATTACGGTTAAGGTTGAGGAAGGAGTCCCAAGTGCAGTCCGAGTGGCTGCAAATCCAAGTGATTCTAAGCCCCTTTCGGCAACACCTTTGGAAAGGGAGAGTGGGAGTGGAAGTGCAAGTAGAATTGCGTTGCCTCCATTGGTGTCGTACTCGAATGTTTTTGGTGATTTGAAGAAAGAGAGGTTGGTTTGTAATAATTGTGGCGGACATTGTGATTCTGGACACTACAAGTATAACGAGGGTGATTTTCTACTTTGCACAAAGTGCTTTGAAAATGGAAACTATGGGGAGAACAAATTGAAGGAAGATTTCAAGTACAATGAGCCAGTTGAAAAGAGTGGTAATACTGGAGTTGAGTGGACTGAAGCAGAAACTTTACTTCTTTTAGAATCTGTTGTGAAATATGGAGATGATTGGGATCGTGTTGCTCAAAATGTTCAGACCAAGACCAAAGTTGATTGTATTGCGAAGCTTATTGATCTGCCTTTTGGGGAGGTTCCGTTGGGTTCAGGTCACAGAAAAGGTAAGCACAGTGGCAACTTGAGCGGTTCAAAACAAGGTCAGTTATCTTTGTCAGAGTGTCAAGAGGCTATCAAAACAAAGAGTCATGAGCAGGCAAATGACAGTGAGCAGAATGGAGATACTGCAAACCAAGGCCCCCCTTTGAAAAAACAATGTGTTACTTCCCTTTCGGATTCTAGTAGTTCACTGATTACACAGGTATCAGCCTTATCAACCTTGGTTGGTCCACATATTACAGCTGCTGCAGCTGAGGCTGCTGTTACTATACTTTGTGAGGAAACCTCATGTTCAAAGGAGATATTTAATGCTGAAGATGATTCTGTTACTAATGGCTTGCAGTCTCCCGCTATAAACTGTGAGACAGAGAGAGTCCTTCAACTTGAAGATTCAGAGATGAAGGAGAAGCCAACTGAATCAGCAAGCCATGTTGCATTTGAGAAAAAAGATGGCATACCTCCAACTTTACAAATTAGAGCTGCCATCGCAACAGGTCTTGGAGCAGCTGCTGCTCGTGCAAAATTGCTGGTGGATCAGGAGGATAGAGAGATTGAACATCTTTTGGCAACCATAATAGGGACACAGATGAAGAAGTTGCACTGCAAAATGAAGAATGTCGAAGAAATAGAGCTGCTTATGGAGAATGAATATGCAGAAACCAAAGAAGAAGAAGATTCTCTGCTAGCAGAGCGAATTGACGTCATACAAAAGACGATAAACTCTGGCGTACCTAGATGGAGGGATCATCCTTCTCTCAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

550

Amino Acids

60.74

Weight (kDa)

5.27

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	31 - 108	1.3e-25	SWIRM domain
Myb_DNA-binding	PF00249	241 - 279	9.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1587
AccBSI	CCGCTC	1 cut(s)	912
AciI	CCGC	3 cut(s)	570, 912, 1233
AclWI	GGATC	3 cut(s)	792, 1425, 1635
AcuI	CTGAAG	2 cut(s)	750, 1218
AcyI	GRCGYC	1 cut(s)	1584
AdeI	CACNNNGTG	1 cut(s)	630
AfaI	GTAC	4 cut(s)	173, 515, 683, 1614
AfiI	CCNNNNNNNGG	2 cut(s)	246, 1461
AjnI	CCWGG	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	1233, 1241
AlwI	GGATC	3 cut(s)	792, 1425, 1635
AlwNI	CAGNNNCTG	2 cut(s)	1130, 1394
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	360, 1021
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	1022, 1112
AsuC2I	CCSGG	2 cut(s)	14, 15
AsuHPI	GGTGA	5 cut(s)	229, 275, 368, 542, 620
AsuNHI	GCTAGC	1 cut(s)	1567
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	1112
BaeI	ACNNNNGTAYC	2 cut(s)	1071, 1104
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	1398
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	1137
BccI	CCATC	6 cut(s)	71, 134, 341, 1328, 1376, 1614
BciT130I	CCWGG	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	14, 15
BcoDI	GTCTC	2 cut(s)	1233, 1241
BfaI	CTAG	5 cut(s)	78, 222, 1065, 1568, 1617
BfmI	CTRYAG	1 cut(s)	1131
Bme1390I	CCNGG	3 cut(s)	14, 15, 364
Bme18I	GGWCC	1 cut(s)	1112
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	1022, 1112
BmiI	GGNNCC	2 cut(s)	864, 1024
BmrFI	CCNGG	3 cut(s)	14, 15, 364
BmtI	GCTAGC	1 cut(s)	1571
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	1154, 1186
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	928
BpuMI	CCSGG	2 cut(s)	14, 15
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	1584
BsaJI	CCNNGG	3 cut(s)	13, 1018, 1104
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 851, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 1461
Bse1I	ACTGG	2 cut(s)	692, 718
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	13, 1018, 1104
BseGI	GGATG	3 cut(s)	63, 100, 1630
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	2 cut(s)	246, 1461
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	102, 1128
BseNI	ACTGG	2 cut(s)	692, 718
BsgI	GTGCAG	2 cut(s)	263, 420
BshFI	GGCC	2 cut(s)	362, 1023
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	377, 1477
BslI	CCNNNNNNNGG	2 cut(s)	246, 1461
BsmAI	GTCTC	2 cut(s)	1233, 1241
BsmFI	GGGAC	2 cut(s)	377, 1477
BsnI	GGCC	2 cut(s)	362, 1023
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	784, 844, 1417, 1627
BspACI	CCGC	3 cut(s)	570, 912, 1233
BspANI	GGCC	2 cut(s)	362, 1023
BspCNI	CTCAG	2 cut(s)	103, 1129
BspHI	TCATGA	2 cut(s)	103, 973
BspLI	GGNNCC	2 cut(s)	864, 1024
BspMAI	CTGCAG	1 cut(s)	1135
BspOI	GCTAGC	1 cut(s)	1571
BspPI	GGATC	3 cut(s)	792, 1425, 1635
BsrBI	CCGCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	692, 718
BssECI	CCNNGG	3 cut(s)	13, 1018, 1104
BssMI	GATC	4 cut(s)	784, 844, 1417, 1627
BssNI	GRCGYC	1 cut(s)	1584
BssSI	CACGAG	1 cut(s)	1398
BssT1I	CCWWGG	2 cut(s)	1018, 1104
Bst2BI	CACGAG	1 cut(s)	1398
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	4 cut(s)	373, 899, 992, 1244
BstACI	GRCGYC	1 cut(s)	1584
BstAPI	GCANNNNNTGC	2 cut(s)	630, 1394
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	981, 1223, 1309, 1569
BstDEI	CTNAG	3 cut(s)	111, 432, 1137
BstF5I	GGATG	3 cut(s)	63, 100, 1630
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	4 cut(s)	787, 847, 1420, 1630
BstMAI	GTCTC	2 cut(s)	1233, 1241
BstMBI	GATC	4 cut(s)	784, 844, 1417, 1627
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	12, 13, 362
BstSFI	CTRYAG	1 cut(s)	1131
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	362, 1023
BtgZI	GCGATG	1 cut(s)	1354
BtsCI	GGATG	3 cut(s)	63, 100, 1630
BtsI	GCAGTG	1 cut(s)	1483
BtsIMutI	CAGTG	4 cut(s)	904, 997, 1073, 1483
Cac8I	GCNNGC	4 cut(s)	981, 1223, 1309, 1569
CaiI	CAGNNNCTG	2 cut(s)	1130, 1394
CciI	TCATGA	2 cut(s)	103, 973
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	1022, 1112
Cfr9I	CCCGGG	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	172, 514, 682, 1613
CviAII	CATG	5 cut(s)	8, 104, 974, 1173, 1313
CviQI	GTAC	4 cut(s)	172, 514, 682, 1613
DdeI	CTNAG	3 cut(s)	111, 432, 1137
DpnI	GATC	4 cut(s)	786, 846, 1419, 1629
DpnII	GATC	4 cut(s)	784, 844, 1417, 1627
DraIII	CACNNNGTG	1 cut(s)	630
EciI	GGCGGA	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	1018, 1104
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	1112
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	750, 1218
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	1018, 1104
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	1018, 1104
FaeI	CATG	5 cut(s)	11, 107, 977, 1176, 1316
FaqI	GGGAC	2 cut(s)	377, 1477
FatI	CATG	5 cut(s)	7, 103, 973, 1172, 1312
FauI	CCCGC	1 cut(s)	1240
FokI	GGATG	3 cut(s)	50, 107, 1617
FriOI	GRGCYC	1 cut(s)	51
FspBI	CTAG	5 cut(s)	78, 222, 1065, 1568, 1617
GlaI	GCGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	362, 1023
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	1584
Hin1II	CATG	5 cut(s)	11, 107, 977, 1176, 1316
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	836
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	5 cut(s)	229, 275, 368, 542, 620
Hpy166II	GTNNAC	4 cut(s)	172, 726, 1073, 1115
Hpy188I	TCNGA	7 cut(s)	32, 249, 407, 807, 943, 1060, 1279
Hpy188III	TCNNGA	6 cut(s)	104, 156, 585, 950, 974, 1421
Hpy8I	GTNNAC	4 cut(s)	172, 726, 1073, 1115
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	6 cut(s)	121, 380, 661, 1271, 1279, 1644
HpyCH4III	ACNGT	4 cut(s)	373, 899, 992, 1244
HpyCH4IV	ACGT	1 cut(s)	1584
HpyF3I	CTNAG	3 cut(s)	111, 432, 1137
HpySE526I	ACGT	1 cut(s)	1584
Hsp92I	GRCGYC	1 cut(s)	1584
Hsp92II	CATG	5 cut(s)	11, 107, 977, 1176, 1316
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	784, 844, 1417, 1627
LmnI	GCTCC	2 cut(s)	33, 1385
MaeI	CTAG	5 cut(s)	78, 222, 1065, 1568, 1617
MaeII	ACGT	1 cut(s)	1584
MaeIII	GTNAC	5 cut(s)	268, 878, 1045, 1147, 1210
MalI	GATC	4 cut(s)	786, 846, 1419, 1629
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	4 cut(s)	784, 844, 1417, 1627
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	8 cut(s)	292, 319, 489, 562, 662, 1356, 1406, 1578
MlyI	GAGTC	3 cut(s)	399, 979, 1266
MmeI	TCCRAC	2 cut(s)	55, 1370
MseI	TTAA	6 cut(s)	198, 291, 318, 375, 1191, 1648
MspA1I	CMGCKG	3 cut(s)	1127, 1136, 1391
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	14, 15, 364
MvaI	CCWGG	1 cut(s)	364
NciI	CCSGG	2 cut(s)	14, 15
NdeII	GATC	4 cut(s)	784, 844, 1417, 1627
NheI	GCTAGC	1 cut(s)	1567
NlaIII	CATG	5 cut(s)	11, 107, 977, 1176, 1316
NlaIV	GGNNCC	2 cut(s)	864, 1024
NmuCI	GTSAC	1 cut(s)	878
PagI	TCATGA	2 cut(s)	103, 973
PleI	GAGTC	3 cut(s)	398, 978, 1265
PpsI	GAGTC	3 cut(s)	398, 978, 1265
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	864, 1024
PspPI	GGNCC	2 cut(s)	1022, 1112
PstI	CTGCAG	1 cut(s)	1135
PstNI	CAGNNNCTG	2 cut(s)	1130, 1394
PvuII	CAGCTG	3 cut(s)	1127, 1136, 1391
RsaI	GTAC	4 cut(s)	173, 515, 683, 1614
RsaNI	GTAC	4 cut(s)	172, 514, 682, 1613
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	6 cut(s)	198, 291, 318, 375, 1191, 1648
Sau3AI	GATC	4 cut(s)	784, 844, 1417, 1627
Sau96I	GGNCC	2 cut(s)	1022, 1112
SchI	GAGTC	3 cut(s)	399, 979, 1266
ScrFI	CCNGG	3 cut(s)	14, 15, 364
SduI	GDGCHC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	1131
SinI	GGWCC	1 cut(s)	1112
SmaI	CCCGGG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
Sse9I	AATT	8 cut(s)	292, 319, 489, 562, 662, 1356, 1406, 1578
SsiI	CCGC	3 cut(s)	570, 912, 1233
SspMI	CTAG	5 cut(s)	78, 222, 1065, 1568, 1617
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	12, 13, 362
StyI	CCWWGG	2 cut(s)	1018, 1104
TaaI	ACNGT	4 cut(s)	373, 899, 992, 1244
TaiI	ACGT	1 cut(s)	1587
TaqI	TCGA	3 cut(s)	51, 518, 1503
TasI	AATT	8 cut(s)	292, 319, 489, 562, 662, 1356, 1406, 1578
TatI	WGTACW	2 cut(s)	171, 681
Tru1I	TTAA	6 cut(s)	198, 291, 318, 375, 1191, 1648
Tru9I	TTAA	6 cut(s)	198, 291, 318, 375, 1191, 1648
TscAI	CASTG	4 cut(s)	904, 997, 1080, 1490
TseFI	GTSAC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	6 cut(s)	92, 120, 1298, 1487, 1508, 1545
TspGWI	ACGGA	1 cut(s)	855
TspMI	CCCGGG	1 cut(s)	13
TspRI	CASTG	4 cut(s)	904, 997, 1080, 1490
VpaK11BI	GGWCC	1 cut(s)	1112
VspI	ATTAAT	1 cut(s)	318
XmaI	CCCGGG	1 cut(s)	13
XspI	CTAG	5 cut(s)	78, 222, 1065, 1568, 1617
ZraI	GACGTC	1 cut(s)	1585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.