Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Forward (+)

24671843 .. 24674689

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1152600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGAAGCAATCATCCCAAATTGTCAACTGGGTCCGCTGGTTTCTGTGGGATGAGATTCATGAAACTGAGAGAATTGCGTTGAAAGAGTATTTTGATGGGAGCTCGATATCGAGAACGCCGAAAACGTACAAGGAATACAGGGATTTTATCATTAATAAGTACAGGGAAGATCCTTCTAGGAAGCTTACATTCACTGAGGTTAGAAAGTCGCTTGTGGGTGATGTTACTTTGCTTCATAAGGTGTTTAATTTCTTGGAGAAGTGGGGGTTGATTAATTTCGGTGCGAATTCAGGTGGTGGAGGGGGTTTTGTTGCTGGGGGTGATGAGAGGTGTAAGGTTAAGGTTGAGGATGGAGTTCCCAATGGGATCCGGGTGGCTGCAATGCCGAATTCCATTAAACCCATTTCGCAGGTTTCGGGTCAACCTAAAGTTGGGGAGGTTGGGGGTGGTGGAGGTGTGAGTAGAGTTGGGTTTCCTCCGTTGGCATCATACTCTAATATTTTTGGTGATTTGAAGAAGGAGGGGTTGGTTTGTGGAAACTGTGGTGGACATTGCGATTCTGGACACTACAAGTATAGCAAGGGTGATTTTCTGATTTGCGTAAAGTGTTTTGAAAGTGGAAACTATGGGGAGAACAAATTAAGGGATGATTTCAAGTTCAACGAGGCAGTTGAAAATAGCAGGATTAATGGAGTTGAATGGACTGAATCAGAAACCCTATTACTTTTAGAATCTGTTTTCAAGTATGGGGATGATTGGGAGCTTGTTGCCCAAAATGTTCAGACCAAGACCAAATTTGATTGTATTGCTAAGCTCATTGATCTGCCTTTTGGGGAGCTTGTATTGGGTTCTGCTTACACAAAAGACAATTCTAATGGCTTTAGTGCTAATTTGGACTCTACAAAGCAAGTTCAGTTATCTTCAACAGGGTGTCAAGAGACTATCATAACCAAGGGTCAGTTGCATGAGCAGACAGATGATGGCAAGCAGAACGGAGACACTTTGAGTGAAGGTCCACCTTTGAAAAGACAGCGCATTGCTTCTCTTTCGGATGCTAGTACATCTCTGATTGAACAGGTAGCTGCCATATCAACCATGGTTGGTCCACAAATCACAGCTGCCGCAGCTGATGCGGCCGTTAATGTGATTTGTGAGGAAACCTCATGTTCAAGGGAGATATTTGATACTGATGACGATTCTCTTACTAATGGCGTGTGGTCTCCTGCTAAAAACTATGAGACAGAGAGAGTCCAAGACGGGGATTTGGAAATGAAGGAAAAGCCAACCGGATCAGAGAGTCAGGATGCACTCTTCAGAAAAGATGACATACCTCCAACTTTGCAAATTAAAGCTGCCATTGGAACAACTCTCGGAGCAGCTGCCGCTCACTCAAAATTATTGGCTGATCAGGAGGATAGACAGATTGAATATCTAATGGCAACCATAATTGGGACACAGATGAAAAAGCTGCACTTCAAACTGGATTACGTCAAAGATCTGGAGCAAATCATGAAGAAGGAACACGCTCAAATTGAAGACGCAGAAGATTTTCTCGTACAAGAGCGGATTAATGTCTTGCAAAGAACATTCGACTCCAGTGTACCTAGATGGAGGGGTCATCCCGCTATGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

546

Amino Acids

60.3

Weight (kDa)

5.22

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	16 - 93	6.3e-25	SWIRM domain
Myb_DNA-binding	PF00249	233 - 271	1.1e-07	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	455 - 529	1.7e-17	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccBSI	CCGCTC	2 cut(s)	1385, 1564
AciI	CCGC	6 cut(s)	34, 1122, 1133, 1383, 1564, 1623
AclWI	GGATC	4 cut(s)	164, 361, 374, 1297
AcoI	YGGCCR	1 cut(s)	1134
AcsI	RAATTY	3 cut(s)	286, 388, 794
AcuI	CTGAAG	1 cut(s)	1297
AfaI	GTAC	5 cut(s)	128, 161, 1060, 1557, 1602
AfiI	CCNNNNNNNGG	3 cut(s)	431, 1258, 1449
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	4 cut(s)	932, 990, 1224, 1232
AlwI	GGATC	4 cut(s)	164, 361, 374, 1297
AoxI	GGCC	1 cut(s)	1134
ApeKI	GCWGC	8 cut(s)	377, 1082, 1118, 1124, 1352, 1376, 1379, 1468
ApoI	RAATTY	3 cut(s)	286, 388, 794
AseI	ATTAAT	4 cut(s)	153, 273, 687, 1569
Asp700I	GAANNNNTTC	1 cut(s)	1548
AspLEI	GCGC	1 cut(s)	1035
AspS9I	GGNCC	3 cut(s)	31, 1013, 1103
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	4 cut(s)	230, 332, 518, 596
AvaII	GGWCC	3 cut(s)	31, 1013, 1103
BamHI	GGATCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	1542
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	8 cut(s)	364, 1069, 1105, 1136, 1339, 1366, 1388, 1455
BccI	CCATC	4 cut(s)	89, 344, 974, 1602
BceAI	ACGGC	1 cut(s)	1121
BclI	TGATCA	1 cut(s)	1405
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	4 cut(s)	932, 990, 1224, 1232
BfaI	CTAG	3 cut(s)	177, 1056, 1605
BfuAI	ACCTGC	1 cut(s)	400
BglII	AGATCT	1 cut(s)	1495
BlpI	GCTNAGC	1 cut(s)	810
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	3 cut(s)	31, 1013, 1103
BmgT120I	GGNCC	3 cut(s)	31, 1013, 1103
BmiI	GGNNCC	2 cut(s)	32, 368
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	494, 1042, 1120, 1294
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	1542
BplI	GAGNNNNNCTC	2 cut(s)	1145, 1177
BpmI	CTGGAG	2 cut(s)	1520, 1579
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuMI	CCSGG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	1224
BsaJI	CCNNGG	2 cut(s)	951, 1095
BsaWI	WCCGGW	1 cut(s)	1286
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 1258, 1449
Bse1I	ACTGG	3 cut(s)	32, 1485, 1596
Bse3DI	GCAATG	3 cut(s)	387, 550, 1035
BseDI	CCNNGG	2 cut(s)	951, 1095
BseGI	GGATG	8 cut(s)	11, 55, 355, 652, 757, 1057, 1309, 1618
BseLI	CCNNNNNNNGG	3 cut(s)	431, 1258, 1449
BseMI	GCAATG	3 cut(s)	387, 550, 1035
BseMII	CTCAG	2 cut(s)	57, 186
BseNI	ACTGG	3 cut(s)	32, 1485, 1596
BseX3I	CGGCCG	1 cut(s)	1134
BseXI	GCAGC	8 cut(s)	364, 1069, 1105, 1136, 1339, 1366, 1388, 1455
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	1454
Bsh1285I	CGRYCG	1 cut(s)	1137
BshFI	GGCC	1 cut(s)	1136
BsiEI	CGRYCG	1 cut(s)	1137
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	370, 1287
BslFI	GGGAC	1 cut(s)	1465
BslI	CCNNNNNNNGG	3 cut(s)	431, 1258, 1449
BsmAI	GTCTC	4 cut(s)	932, 990, 1224, 1232
BsmFI	GGGAC	1 cut(s)	1465
BsnI	GGCC	1 cut(s)	1136
Bso31I	GGTCTC	1 cut(s)	1224
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	1 cut(s)	1095
BspACI	CCGC	6 cut(s)	34, 1122, 1133, 1383, 1564, 1623
BspANI	GGCC	1 cut(s)	1136
BspCNI	CTCAG	2 cut(s)	58, 187
BspHI	TCATGA	2 cut(s)	58, 1509
BspLI	GGNNCC	2 cut(s)	32, 368
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	4 cut(s)	164, 361, 374, 1297
BspTNI	GGTCTC	1 cut(s)	1224
BsrBI	CCGCTC	2 cut(s)	1385, 1564
BsrDI	GCAATG	3 cut(s)	387, 550, 1035
BsrI	ACTGG	3 cut(s)	32, 1485, 1596
BssECI	CCNNGG	2 cut(s)	951, 1095
BssMI	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
BssT1I	CCWWGG	2 cut(s)	951, 1095
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	1316
BstAPI	GCANNNNNTGC	1 cut(s)	1130
BstC8I	GCNNGC	1 cut(s)	986
BstDEI	CTNAG	3 cut(s)	66, 195, 810
BstDSI	CCRYGG	1 cut(s)	1095
BstF5I	GGATG	8 cut(s)	11, 55, 355, 652, 757, 1057, 1309, 1618
BstHHI	GCGC	1 cut(s)	1035
BstKTI	GATC	6 cut(s)	172, 369, 823, 1292, 1408, 1498
BstMAI	GTCTC	4 cut(s)	932, 990, 1224, 1232
BstMBI	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
BstMCI	CGRYCG	1 cut(s)	1137
BstMWI	GCNNNNNNNGC	4 cut(s)	1124, 1130, 1133, 1382
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	8 cut(s)	364, 1069, 1105, 1136, 1339, 1366, 1388, 1455
BstV2I	GAAGAC	1 cut(s)	1542
BstX2I	RGATCY	3 cut(s)	169, 366, 1495
BstYI	RGATCY	3 cut(s)	169, 366, 1495
BstZI	CGGCCG	1 cut(s)	1134
BsuRI	GGCC	1 cut(s)	1136
BtgI	CCRYGG	1 cut(s)	1095
BtsCI	GGATG	8 cut(s)	11, 55, 355, 652, 757, 1057, 1309, 1618
BtsIMutI	CAGTG	2 cut(s)	192, 1603
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	986
CciI	TCATGA	2 cut(s)	58, 1509
CfoI	GCGC	1 cut(s)	1035
Cfr13I	GGNCC	3 cut(s)	31, 1013, 1103
CseI	GACGC	1 cut(s)	1547
Csp6I	GTAC	5 cut(s)	127, 160, 1059, 1556, 1601
CviAII	CATG	5 cut(s)	59, 965, 1096, 1164, 1510
CviQI	GTAC	5 cut(s)	127, 160, 1059, 1556, 1601
DdeI	CTNAG	3 cut(s)	66, 195, 810
DpnI	GATC	6 cut(s)	171, 368, 822, 1291, 1407, 1497
DpnII	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
EaeI	YGGCCR	1 cut(s)	1134
EagI	CGGCCG	1 cut(s)	1134
Eam1104I	CTCTTC	1 cut(s)	1316
EarI	CTCTTC	1 cut(s)	1316
Ecl136II	GAGCTC	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	1134
Eco130I	CCWWGG	2 cut(s)	951, 1095
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	1224
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	31, 1013, 1103
Eco52I	CGGCCG	1 cut(s)	1134
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	1297
EcoICRI	GAGCTC	1 cut(s)	102
EcoRI	GAATTC	2 cut(s)	286, 388
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	951, 1095
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	951, 1095
FaeI	CATG	5 cut(s)	62, 968, 1099, 1167, 1513
FalI	AAGNNNNNCTT	2 cut(s)	1457, 1489
FaqI	GGGAC	1 cut(s)	1465
FatI	CATG	5 cut(s)	58, 964, 1095, 1163, 1509
FauI	CCCGC	1 cut(s)	1630
FbaI	TGATCA	1 cut(s)	1405
FokI	GGATG	7 cut(s)	62, 362, 659, 764, 1064, 1316, 1605
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	3 cut(s)	177, 1056, 1605
GlaI	GCGC	1 cut(s)	1034
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	1520, 1579
HaeIII	GGCC	1 cut(s)	1136
HapII	CCGG	2 cut(s)	370, 1287
HgaI	GACGC	1 cut(s)	1547
HhaI	GCGC	1 cut(s)	1035
Hin1II	CATG	5 cut(s)	62, 968, 1099, 1167, 1513
Hin6I	GCGC	1 cut(s)	1033
HinP1I	GCGC	1 cut(s)	1033
HincII	GTYRAC	2 cut(s)	25, 422
HindII	GTYRAC	2 cut(s)	25, 422
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	9 cut(s)	55, 557, 707, 731, 896, 1196, 1248, 1297, 1592
HpaII	CCGG	2 cut(s)	370, 1287
HphI	GGTGA	4 cut(s)	230, 332, 518, 596
Hpy166II	GTNNAC	6 cut(s)	25, 422, 548, 1016, 1106, 1601
Hpy188I	TCNGA	8 cut(s)	594, 712, 783, 1051, 1068, 1294, 1316, 1373
Hpy188III	TCNNGA	9 cut(s)	59, 111, 561, 935, 1301, 1409, 1499, 1510, 1635
Hpy8I	GTNNAC	6 cut(s)	25, 422, 548, 1016, 1106, 1601
HpyAV	CCTTC	5 cut(s)	183, 511, 1004, 1267, 1510
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	2 cut(s)	125, 1488
HpyCH4V	TGCA	6 cut(s)	380, 964, 1307, 1342, 1471, 1579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1124, 1130, 1133, 1382
HpyF3I	CTNAG	3 cut(s)	66, 195, 810
HpySE526I	ACGT	2 cut(s)	125, 1488
Hsp92II	CATG	5 cut(s)	62, 968, 1099, 1167, 1513
HspAI	GCGC	1 cut(s)	1033
Ksp22I	TGATCA	1 cut(s)	1405
Kzo9I	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
LmnI	GCTCC	5 cut(s)	99, 760, 835, 1373, 1501
Lsp1109I	GCAGC	8 cut(s)	364, 1069, 1105, 1136, 1339, 1366, 1388, 1455
LweI	GCATC	4 cut(s)	494, 1042, 1120, 1294
MaeI	CTAG	3 cut(s)	177, 1056, 1605
MaeII	ACGT	2 cut(s)	125, 1488
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	6 cut(s)	171, 368, 822, 1291, 1407, 1497
MbiI	CCGCTC	2 cut(s)	1385, 1564
MboI	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
MboII	GAAGA	7 cut(s)	179, 526, 912, 1303, 1525, 1547, 1556
MflI	RGATCY	3 cut(s)	169, 366, 1495
MhlI	GDGCHC	1 cut(s)	104
MlyI	GAGTC	4 cut(s)	890, 1257, 1306, 1586
MmeI	TCCRAC	1 cut(s)	1358
MroXI	GAANNNNTTC	1 cut(s)	1548
MspA1I	CMGCKG	4 cut(s)	36, 1118, 1127, 1379
MspI	CCGG	2 cut(s)	370, 1287
MspR9I	CCNGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	1124, 1130, 1133, 1382
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	1095
NdeII	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
NlaIII	CATG	5 cut(s)	62, 968, 1099, 1167, 1513
NlaIV	GGNNCC	2 cut(s)	32, 368
PagI	TCATGA	2 cut(s)	58, 1509
PcsI	WCGNNNNNNNCGW	2 cut(s)	116, 122
PdmI	GAANNNNTTC	1 cut(s)	1548
PfeI	GAWTC	5 cut(s)	55, 557, 707, 731, 1196
PleI	GAGTC	4 cut(s)	890, 1256, 1305, 1586
PpsI	GAGTC	4 cut(s)	890, 1256, 1305, 1586
PshBI	ATTAAT	4 cut(s)	153, 273, 687, 1569
Psp124BI	GAGCTC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	32, 368
PspPI	GGNCC	3 cut(s)	31, 1013, 1103
PsuI	RGATCY	3 cut(s)	169, 366, 1495
PvuII	CAGCTG	3 cut(s)	1118, 1127, 1379
RsaI	GTAC	5 cut(s)	128, 161, 1060, 1557, 1602
RsaNI	GTAC	5 cut(s)	127, 160, 1059, 1556, 1601
SacI	GAGCTC	1 cut(s)	104
Sau3AI	GATC	6 cut(s)	169, 366, 820, 1289, 1405, 1495
Sau96I	GGNCC	3 cut(s)	31, 1013, 1103
SchI	GAGTC	4 cut(s)	890, 1257, 1306, 1586
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	4 cut(s)	494, 1042, 1120, 1294
SinI	GGWCC	3 cut(s)	31, 1013, 1103
SsiI	CCGC	6 cut(s)	34, 1122, 1133, 1383, 1564, 1623
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	3 cut(s)	177, 1056, 1605
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	951, 1095
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	2 cut(s)	128, 1491
TaqI	TCGA	3 cut(s)	104, 110, 1590
TatI	WGTACW	2 cut(s)	159, 1058
TauI	GCSGC	3 cut(s)	1124, 1136, 1385
TfiI	GAWTC	5 cut(s)	55, 557, 707, 731, 1196
TscAI	CASTG	2 cut(s)	199, 1603
TseI	GCWGC	8 cut(s)	377, 1082, 1118, 1124, 1352, 1376, 1379, 1468
TspDTI	ATGAA	7 cut(s)	17, 47, 75, 224, 1286, 1475, 1526
TspGWI	ACGGA	2 cut(s)	468, 1008
TspRI	CASTG	2 cut(s)	199, 1603
VpaK11BI	GGWCC	3 cut(s)	31, 1013, 1103
VspI	ATTAAT	4 cut(s)	153, 273, 687, 1569
XapI	RAATTY	3 cut(s)	286, 388, 794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093
XmnI	GAANNNNTTC	1 cut(s)	1548
XspI	CTAG	3 cut(s)	177, 1056, 1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.