Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042771.1

Orthogroup ID

OG0009551

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1082

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atggaacttgcaccgcacgacccgggttcaaagcagctccgacccgacgaaccagagctcgacctctacaccatcccaagccactctagctggtttttgtgggatgagattcatgaaactgagagaattgctttgaaggagttctttgatgggaggtcgatatcaagaacaccaaaggtgtacaaagaatatagggactttattattaacaagtatagagaagacccagctagaaaactcacattcaccgagattcgaaagtcacttgtgggtgatgttactttgctgcacaaggtctttagtttcttggaaaaatgggggttgattaattttggggcaagttcgggtgacaatgacggttttggtacctcatgtgaggccgggactacggttaaggttgaggaaggagtcccaaatgcggtccgagtgggtgcaaatccaagtgattctaagcccctttcggccacacctacggtagtggacagtgggggtggaagtgcgagtagaattacattgcctccattggcatcatactcgaatgtttttggtgatttgaagaaagagagcttggtttgtggcaattgtggcggacattgtgattctggacactacaagtataataagggtgattttctactttgcacaaagtgttttgaaaatggaaactatggggagaacaaattgaaggaaaatttcaagtacaacgagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

237

Amino Acids

26.36

Weight (kDa)

5.74

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47620 AT2G47620
fragaria_vesca	FvH4_5g08750 FvH4_5g08750
malus_domestica	MD06G1137800.v1.1 MD14G1152600.v1.1
prunus_persica	Prupe.5G147600_v2.0.a1 Prupe.5G147600_v2.0.a1
pyrus_communis	pycom06g12900 pycom14g12700
rosa_chinensis	RchiOBHm_Chr7g0189531
rosa_laevigata	RLG00000004603
rosa_multiflora	Rmu_co8438941.1_g000001 Rmu_sc0001924.1_g000010 Rmu_sc0009639.1_g000010 Rmu_sc0042771.1_g000001
rosa_rugosa	Rorug06G0498800
rosa_samantha	Rh7AG103700 Rh7BG106400 Rh7CG108500 Rh7DG105800
rosa_wichuraiana	Rw7G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AciI	CCGC	3 cut(s)	14, 419, 588
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	691
AdeI	CACNNNGTG	1 cut(s)	648
AfaI	GTAC	3 cut(s)	182, 367, 701
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	6 cut(s)	30, 136, 556, 656, 685, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	5 cut(s)	37, 58, 90, 230, 567
AluI	AGCT	5 cut(s)	37, 58, 90, 230, 567
Alw21I	GWGCWC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	378, 462
ApeKI	GCWGC	2 cut(s)	34, 286
ApoI	RAATTY	1 cut(s)	691
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	3 cut(s)	23, 24, 382
AsuHPI	GGTGA	5 cut(s)	238, 284, 359, 560, 638
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	46, 273
BccI	CCATC	2 cut(s)	80, 143
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BcnI	CCSGG	3 cut(s)	23, 24, 382
BfaI	CTAG	2 cut(s)	87, 231
BisI	GCNGC	2 cut(s)	35, 287
BlsI	GCNGC	2 cut(s)	36, 288
Bme1390I	CCNGG	3 cut(s)	23, 24, 382
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	3 cut(s)	23, 24, 382
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	256
BpuMI	CCSGG	3 cut(s)	23, 24, 382
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	72, 109
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	46, 273
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	380, 464
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	23, 381
BslFI	GGGAC	3 cut(s)	209, 395, 397
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	3 cut(s)	209, 395, 397
BsnI	GGCC	2 cut(s)	380, 464
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	180
BspACI	CCGC	3 cut(s)	14, 419, 588
BspANI	GGCC	2 cut(s)	380, 464
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	22
Bst4CI	ACNGT	4 cut(s)	359, 391, 475, 485
BstAUI	TGTACA	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	120, 450
BstF5I	GGATG	2 cut(s)	72, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 585
BstSCI	CCNGG	3 cut(s)	21, 22, 380
BstV1I	GCAGC	2 cut(s)	46, 273
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	380, 464
BtsCI	GGATG	2 cut(s)	72, 109
BtsIMutI	CAGTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	421
Cfr9I	CCCGGG	1 cut(s)	22
CpoI	CGGWCCG	1 cut(s)	421
Csp6I	GTAC	3 cut(s)	181, 366, 700
CspI	CGGWCCG	1 cut(s)	421
CviAII	CATG	2 cut(s)	113, 372
CviQI	GTAC	3 cut(s)	181, 366, 700
DdeI	CTNAG	2 cut(s)	120, 450
DraIII	CACNNNGTG	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	462
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	2 cut(s)	116, 375
FaiI	YATR	7 cut(s)	114, 192, 216, 373, 532, 618, 669
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	3 cut(s)	209, 395, 397
FatI	CATG	2 cut(s)	112, 371
Fnu4HI	GCNGC	2 cut(s)	35, 287
FokI	GGATG	2 cut(s)	59, 116
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	35, 287
FspBI	CTAG	2 cut(s)	87, 231
GluI	GCNGC	2 cut(s)	35, 287
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	380, 464
HapII	CCGG	2 cut(s)	23, 381
Hin1II	CATG	2 cut(s)	116, 375
HinfI	GANTC	5 cut(s)	109, 253, 408, 446, 599
HpaII	CCGG	2 cut(s)	23, 381
HphI	GGTGA	5 cut(s)	238, 284, 359, 560, 638
Hpy166II	GTNNAC	2 cut(s)	181, 481
Hpy188I	TCNGA	2 cut(s)	41, 425
Hpy188III	TCNNGA	3 cut(s)	113, 165, 603
Hpy8I	GTNNAC	2 cut(s)	181, 481
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	130, 398, 679
HpyCH4III	ACNGT	4 cut(s)	359, 391, 475, 485
HpyCH4V	TGCA	4 cut(s)	11, 289, 434, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 585
HpyF3I	CTNAG	2 cut(s)	120, 450
Hsp92II	CATG	2 cut(s)	116, 375
KpnI	GGTACC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	36, 66, 76, 240, 394, 588
Lsp1109I	GCAGC	2 cut(s)	46, 273
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	87, 231
MaeIII	GTNAC	3 cut(s)	261, 277, 347
MboII	GAAGA	2 cut(s)	233, 568
MfeI	CAATTG	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	6 cut(s)	126, 328, 507, 580, 680, 691
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	74, 147, 370, 379, 394, 528
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	3 cut(s)	207, 327, 393
MspI	CCGG	2 cut(s)	23, 381
MspR9I	CCNGG	3 cut(s)	23, 24, 382
MunI	CAATTG	1 cut(s)	580
MwoI	GCNNNNNNNGC	2 cut(s)	87, 585
NciI	CCSGG	3 cut(s)	23, 24, 382
NlaIII	CATG	2 cut(s)	116, 375
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	261, 347
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	109, 253, 446, 599
PkrI	GCNGC	2 cut(s)	36, 288
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	421
RsaI	GTAC	3 cut(s)	182, 367, 701
RsaNI	GTAC	3 cut(s)	181, 366, 700
Rsr2I	CGGWCCG	1 cut(s)	421
RsrII	CGGWCCG	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	207, 327, 393
SatI	GCNGC	2 cut(s)	35, 287
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	3 cut(s)	23, 24, 382
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	536
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	24
Sse9I	AATT	6 cut(s)	126, 328, 507, 580, 680, 691
SsiI	CCGC	3 cut(s)	14, 419, 588
SspMI	CTAG	2 cut(s)	87, 231
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	21, 22, 380
TaaI	ACNGT	4 cut(s)	359, 391, 475, 485
TaqI	TCGA	4 cut(s)	60, 158, 256, 536
TasI	AATT	6 cut(s)	126, 328, 507, 580, 680, 691
TatI	WGTACW	2 cut(s)	180, 699
TfiI	GAWTC	4 cut(s)	109, 253, 446, 599
Tru1I	TTAA	3 cut(s)	207, 327, 393
Tru9I	TTAA	3 cut(s)	207, 327, 393
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	261, 347
TseI	GCWGC	2 cut(s)	34, 286
Tsp45I	GTSAC	2 cut(s)	261, 347
TspDTI	ATGAA	2 cut(s)	101, 129
TspMI	CCCGGG	1 cut(s)	22
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	1 cut(s)	691
XmaI	CCCGGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	2 cut(s)	87, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.