AT2G48140
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012814
Physical Location & Seq
Forward (+)
19686333 .. 19687664
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G48140.1

Sequence Viewer

Length: 603 bp
ATGGAAGGCTTAACATTGATAGTAGTGATGATGTCAAGCTTTATGTTGGGAGGGCAAGGTCAGCAGATAAGCACGCCATGCACCTCCTCCATGATCTCTACCTTCACTCCATGTCTCAACTTCATCACCGGAAGCAGCGGCGGTTCCGTCACTCCCACCGCCGGCTGCTGCGACTCCTTGAAGACGTTGACCAACACTGGCATGGGCTGTGCTTGCCTCATCCTCACTGCTAACGTCCCGCTGCCTACTGGCTTCATCAATCGGACTCTGGCGCTTGCTCTACCTCGAGCCTGCAAAATGGGCGGTGTACCTATTCAATGTCAAGCTGCGGGGACTCCTCTACCAGCTCCAGGTCAGGTTCCATTTTTGATTGCTCCACCACCTCAGGTGTCTGCTTTTAGCCCGGGAGCGTCCAAGGCGGCGGGGACAACACCAACACAGGCACCTGCACCGGATACTCCCGCGGATGGACCAACGGGACCCACAACTAAATCAGGAATTCGACCCGTAGATCAGCCCATGCAACCCACCGGCCTCGCTCAATCTTCTACTTCTCCATTTCTCCCGTTGCTTTTCATATCTCTTATCCTGTTGAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

200

Amino Acids

20.14

Weight (kDa)

8.16

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 8 - 107 5.3e-17 Probable lipid transfer
Tryp_alpha_amyl PF00234 31 - 107 1.4e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48140 AT2G48140
fragaria_vesca FvH4_2g23210
malus_domestica MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica Prupe.8G237800_v2.0.a1
pyrus_communis pycom03g20940 pycom11g24990
rosa_chinensis RchiOBHm_Chr6g0290481
rosa_laevigata RLG00000012211
rosa_roxburghii Rroxscaffold_7G00177020
rosa_rugosa Rorug06G0212900 Rorug06G0212900
rosa_samantha Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana Rw6G028030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 601
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 1 cut(s) 464
AcsI RAATTY 1 cut(s) 498
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 3 cut(s) 161, 350, 467
AgsI TTSAA 3 cut(s) 181, 317, 595
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 3 cut(s) 39, 326, 347
AluI AGCT 3 cut(s) 39, 326, 347
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 285, 403
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 5 cut(s) 135, 165, 168, 241, 326
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 470, 479
AsuC2I CCSGG 2 cut(s) 404, 405
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 2 cut(s) 285, 403
AvaII GGWCC 2 cut(s) 470, 479
AxyI CCTNAGG 1 cut(s) 384
BanI GGYRCC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 5 cut(s) 147, 152, 155, 228, 313
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 448
BcnI CCSGG 2 cut(s) 404, 405
BcoDI GTCTC 1 cut(s) 119
BfoI RGCGCY 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 454
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 7 cut(s) 136, 139, 166, 169, 242, 327, 420
BlsI GCNGC 7 cut(s) 137, 140, 167, 170, 243, 328, 421
Bme1390I CCNGG 3 cut(s) 351, 404, 405
Bme18I GGWCC 2 cut(s) 470, 479
BmeT110I CYCGRG 2 cut(s) 285, 403
BmgT120I GGNCC 2 cut(s) 470, 479
BmiI GGNNCC 5 cut(s) 145, 360, 444, 480, 481
BmrFI CCNGG 3 cut(s) 351, 404, 405
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 404, 405
BsaJI CCNNGG 3 cut(s) 403, 414, 462
BsaWI WCCGGW 2 cut(s) 128, 451
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 350, 467
Bse118I RCCGGY 2 cut(s) 161, 530
Bse1I ACTGG 2 cut(s) 202, 253
Bse21I CCTNAGG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 403, 414, 462
BseGI GGATG 2 cut(s) 219, 472
BseLI CCNNNNNNNGG 3 cut(s) 161, 350, 467
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 2 cut(s) 202, 253
BseRI GAGGAG 2 cut(s) 76, 327
BseXI GCAGC 5 cut(s) 147, 152, 155, 228, 313
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 534
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 2 cut(s) 285, 403
BsiSI CCGG 5 cut(s) 129, 162, 404, 452, 531
BslFI GGGAC 4 cut(s) 221, 346, 439, 492
BslI CCNNNNNNNGG 3 cut(s) 161, 350, 467
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 4 cut(s) 221, 346, 439, 492
BsnI GGCC 1 cut(s) 534
BsoBI CYCGRG 2 cut(s) 285, 403
Bsp143I GATC 2 cut(s) 93, 511
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 5 cut(s) 145, 360, 444, 480, 481
BspMI ACCTGC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 442
BsrFI RCCGGY 2 cut(s) 161, 530
BsrI ACTGG 2 cut(s) 202, 253
BssAI RCCGGY 2 cut(s) 161, 530
BssECI CCNNGG 3 cut(s) 403, 414, 462
BssMI GATC 2 cut(s) 93, 511
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 5 cut(s) 74, 163, 214, 276, 292
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 219, 472
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 96, 514
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 93, 511
BstMWI GCNNNNNNNGC 5 cut(s) 61, 78, 213, 300, 416
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 349, 402, 403
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 5 cut(s) 147, 152, 155, 228, 313
BstV2I GAAGAC 1 cut(s) 188
Bsu36I CCTNAGG 1 cut(s) 384
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 534
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 219, 472
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 195, 225
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 5 cut(s) 74, 163, 214, 276, 292
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 2 cut(s) 161, 530
Cfr13I GGNCC 2 cut(s) 470, 479
Cfr42I CCGCGG 1 cut(s) 465
Cfr9I CCCGGG 1 cut(s) 403
CseI GACGC 1 cut(s) 399
Csp6I GTAC 1 cut(s) 308
CviAII CATG 5 cut(s) 78, 91, 111, 202, 520
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 95, 513
DpnII GATC 2 cut(s) 93, 511
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 470, 479
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 285, 403
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 5 cut(s) 81, 94, 114, 205, 523
FaiI YATR 8 cut(s) 44, 79, 92, 112, 203, 521, 578, 601
FaqI GGGAC 4 cut(s) 221, 346, 439, 492
FatI CATG 5 cut(s) 77, 90, 110, 201, 519
FauI CCCGC 4 cut(s) 246, 322, 415, 469
Fnu4HI GCNGC 7 cut(s) 136, 139, 166, 169, 242, 327, 420
FokI GGATG 2 cut(s) 206, 479
Fsp4HI GCNGC 7 cut(s) 136, 139, 166, 169, 242, 327, 420
GlaI GCGC 1 cut(s) 273
GluI GCNGC 7 cut(s) 136, 139, 166, 169, 242, 327, 420
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 534
HapII CCGG 5 cut(s) 129, 162, 404, 452, 531
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 274
Hin1II CATG 5 cut(s) 81, 94, 114, 205, 523
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 3 cut(s) 173, 265, 334
HpaII CCGG 5 cut(s) 129, 162, 404, 452, 531
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 189, 308
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 495
Hpy8I GTNNAC 2 cut(s) 189, 308
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 185, 234
HpyCH4V TGCA 4 cut(s) 81, 294, 449, 523
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 78, 213, 300, 416
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 185, 234
Hsp92II CATG 5 cut(s) 81, 94, 114, 205, 523
HspAI GCGC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 479
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
KspI CCGCGG 1 cut(s) 465
Kzo9I GATC 2 cut(s) 93, 511
LmnI GCTCC 3 cut(s) 352, 379, 407
Lsp1109I GCAGC 5 cut(s) 147, 152, 155, 228, 313
MaeII ACGT 2 cut(s) 185, 234
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 95, 513
MboI GATC 2 cut(s) 93, 511
MboII GAAGA 2 cut(s) 193, 537
MluCI AATT 1 cut(s) 498
MlyI GAGTC 3 cut(s) 167, 259, 328
MnlI CCTC 9 cut(s) 44, 94, 97, 227, 233, 294, 348, 393, 545
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 3 cut(s) 138, 241, 464
MspI CCGG 5 cut(s) 129, 162, 404, 452, 531
MspR9I CCNGG 3 cut(s) 351, 404, 405
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 5 cut(s) 61, 78, 213, 300, 416
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 404, 405
NdeII GATC 2 cut(s) 93, 511
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 5 cut(s) 81, 94, 114, 205, 523
NlaIV GGNNCC 5 cut(s) 145, 360, 444, 480, 481
NmuCI GTSAC 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 285
PaqCI CACCTGC 1 cut(s) 454
PdiI GCCGGC 1 cut(s) 163
PkrI GCNGC 7 cut(s) 137, 140, 167, 170, 243, 328, 421
PleI GAGTC 3 cut(s) 167, 259, 328
PpsI GAGTC 3 cut(s) 167, 259, 328
PpuMI RGGWCCY 1 cut(s) 479
PsiI TTATAA 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 5 cut(s) 145, 360, 444, 480, 481
PspPI GGNCC 2 cut(s) 470, 479
PspPPI RGGWCCY 1 cut(s) 479
PspXI VCTCGAGB 1 cut(s) 285
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 200
SacII CCGCGG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 7 cut(s) 136, 139, 166, 169, 242, 327, 420
Sau3AI GATC 2 cut(s) 93, 511
Sau96I GGNCC 2 cut(s) 470, 479
SchI GAGTC 3 cut(s) 167, 259, 328
ScrFI CCNGG 3 cut(s) 351, 404, 405
Sfr274I CTCGAG 1 cut(s) 285
Sfr303I CCGCGG 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 465
SinI GGWCC 2 cut(s) 470, 479
SlaI CTCGAG 1 cut(s) 285
SmaI CCCGGG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 349, 402, 403
StyI CCWWGG 1 cut(s) 414
TaiI ACGT 2 cut(s) 188, 237
TaqI TCGA 2 cut(s) 286, 502
TasI AATT 1 cut(s) 498
TauI GCSGC 2 cut(s) 141, 422
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 2 cut(s) 202, 232
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 5 cut(s) 135, 165, 168, 241, 326
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 112, 244, 565
TspGWI ACGGA 1 cut(s) 136
TspMI CCCGGG 1 cut(s) 403
TspRI CASTG 2 cut(s) 202, 232
VpaK11BI GGWCC 2 cut(s) 470, 479
XapI RAATTY 1 cut(s) 498
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 285
XmaI CCCGGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.