Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012814

Physical Location & Seq

Genomic Coordinates Forward (+)

16296627 .. 16297542

Gene Structure 916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAACCCTTCAAGCCCTTTCTTTCAGTTCTTGTAGTACTCATTTCACTGGTAATTTTAGTTAATGGGCAGGTTAGTACACCATGCGCAGCCTCAAAGCTTAGCACCTTAACTCCATGCTTGAATTATATAACTGGGAGTACCAACAATGGCTCGTCGCCAACAGGGGACTGTTGCGATGCGCTAAAGACCAGCATGGACTGCGCTTGCCTTTTAGTAACCGCCAATGTCCCAATCCAACTGCCCATTAACAGAACCCTTGCTCTCTCTCTTCCTAAAGCATGTAAAATGGGGAGTGTGCCACTACAATGCAAAGCCTCTGCCACTCCTTTAGCTGCCCCAGGTCCTTCCTTACTAGGACCAACTATTTCCCCCACAGCTGCTGATTCTCCTTTAAGTCCAAGAGCTTCTAAAGCAGTAGCAACAGGTCCTGCACCACAATCTGAAGCAGAATCTCCATCAGTTGAACCTGAAGCTCCGACAACTGCGATCAATCGACCACTGCTGACGCCATCTGCAGCCTCTAGTCTATCTTATGTTTCTCCACAACCCCTGCTACTCATAGTTTTAGGAATCATGGTTTATAAATCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

199

Amino Acids

20.2

Weight (kDa)

8.11

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 104	2.5e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 104	1.1e-07	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48140 AT2G48140
fragaria_vesca	FvH4_2g23210
malus_domestica	MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica	Prupe.8G237800_v2.0.a1
pyrus_communis	pycom03g20940 pycom11g24990
rosa_chinensis	RchiOBHm_Chr6g0290481
rosa_laevigata	RLG00000012211
rosa_roxburghii	Rroxscaffold_7G00177020
rosa_rugosa	Rorug06G0212900 Rorug06G0212900
rosa_samantha	Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana	Rw6G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
Acc16I	TGCGCA	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	465, 492
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	3 cut(s)	39, 79, 142
AgsI	TTSAA	3 cut(s)	13, 124, 467
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	5 cut(s)	100, 335, 380, 407, 476
AluI	AGCT	5 cut(s)	100, 335, 380, 407, 476
AlwNI	CAGNNNCTG	2 cut(s)	383, 431
ApeKI	GCWGC	4 cut(s)	89, 335, 380, 518
AspLEI	GCGC	3 cut(s)	89, 184, 206
AspS9I	GGNCC	3 cut(s)	344, 359, 428
AvaII	GGWCC	3 cut(s)	344, 359, 428
BbvI	GCAGC	4 cut(s)	101, 322, 367, 530
BccI	CCATC	2 cut(s)	466, 520
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	3 cut(s)	356, 525, 595
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	4 cut(s)	90, 336, 381, 519
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	4 cut(s)	91, 337, 382, 520
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	3 cut(s)	344, 359, 428
BmgT120I	GGNCC	3 cut(s)	344, 359, 428
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse1I	ACTGG	2 cut(s)	54, 139
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	340
BseNI	ACTGG	2 cut(s)	54, 139
BseXI	GCAGC	4 cut(s)	101, 322, 367, 530
BsgI	GTGCAG	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	182, 215
BsmFI	GGGAC	2 cut(s)	182, 215
Bsp143I	GATC	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	54, 139
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	89, 184, 206
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 413
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	101, 322, 367, 530
BtgZI	GCGATG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	47, 500
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	2 cut(s)	383, 431
CfoI	GCGC	3 cut(s)	89, 184, 206
Cfr13I	GGNCC	3 cut(s)	344, 359, 428
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	38, 78, 141
CviAII	CATG	5 cut(s)	84, 117, 196, 282, 577
CviQI	GTAC	3 cut(s)	38, 78, 141
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	3 cut(s)	344, 359, 428
Eco57I	CTGAAG	2 cut(s)	465, 492
EcoO109I	RGGNCCY	2 cut(s)	344, 428
EcoRII	CCWGG	1 cut(s)	340
FaeI	CATG	5 cut(s)	87, 120, 199, 285, 580
FaqI	GGGAC	2 cut(s)	182, 215
FatI	CATG	5 cut(s)	83, 116, 195, 281, 576
Fnu4HI	GCNGC	4 cut(s)	90, 336, 381, 519
Fsp4HI	GCNGC	4 cut(s)	90, 336, 381, 519
FspBI	CTAG	3 cut(s)	356, 525, 595
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	3 cut(s)	88, 183, 205
GluI	GCNGC	4 cut(s)	90, 336, 381, 519
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	3 cut(s)	89, 184, 206
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	87, 120, 199, 285, 580
Hin6I	GCGC	3 cut(s)	87, 182, 204
HinP1I	GCGC	3 cut(s)	87, 182, 204
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	386, 452, 573
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	445, 480
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	19, 357
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	312, 434, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 413
HpyF3I	CTNAG	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	87, 120, 199, 285, 580
HspAI	GCGC	3 cut(s)	87, 182, 204
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	4 cut(s)	101, 322, 367, 530
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	356, 525, 595
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	2 cut(s)	54, 124
MmeI	TCCRAC	2 cut(s)	262, 503
MnlI	CCTC	3 cut(s)	103, 328, 532
MseI	TTAA	4 cut(s)	63, 110, 249, 395
MslI	CAYNNNNRTG	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	201, 413
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	5 cut(s)	87, 120, 199, 285, 580
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	386, 452, 573
PkrI	GCNGC	4 cut(s)	91, 337, 382, 520
PpuMI	RGGWCCY	2 cut(s)	344, 428
PsiI	TTATAA	1 cut(s)	585
Psp5II	RGGWCCY	2 cut(s)	344, 428
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	344, 359, 428
PspPPI	RGGWCCY	2 cut(s)	344, 428
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	383, 431
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	3 cut(s)	39, 79, 142
RsaNI	GTAC	3 cut(s)	38, 78, 141
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	63, 110, 249, 395
SatI	GCNGC	4 cut(s)	90, 336, 381, 519
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	3 cut(s)	344, 359, 428
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	344, 359, 428
SmiMI	CAYNNNNRTG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	54, 124
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	3 cut(s)	356, 525, 595
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	54, 124
TatI	WGTACW	2 cut(s)	37, 77
TfiI	GAWTC	3 cut(s)	386, 452, 573
Tru1I	TTAA	4 cut(s)	63, 110, 249, 395
Tru9I	TTAA	4 cut(s)	63, 110, 249, 395
TscAI	CASTG	2 cut(s)	54, 507
TseI	GCWGC	4 cut(s)	89, 335, 380, 518
TspRI	CASTG	2 cut(s)	54, 507
VpaK11BI	GGWCC	3 cut(s)	344, 359, 428
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	3 cut(s)	356, 525, 595
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.