pycom03g20940

Non-specific lipid-transfer protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012814
Physical Location & Seq
Reverse (-)
21302651 .. 21303786
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20940.3

Sequence Viewer

Length: 612 bp
ATGGAATCCTTCAAGGATTGTCGATTAAGTCTAATCCCAATTACCCTCCTAATCATTTCACTAAGATTGGTTAATGGGCAGATTAGTACACCGTGCACAGCCTCAATGATAAGCAGCGTCACTCCATGCGTAAATTACATCACCGGGAGTACCAGCAACGGCGGGTCACCGACAGCTGGATGTTGCAGTTTGTTAAAGTCGTTAATGGGCACCGGCATGGACTGTGCCTGTCTTCTTATAACTGGTGGTGTTCCTGTCCAACTGCCCATTAACCGAACCCTCGCGCTTTCTCTTCCTCGAGCTTGTAAGATGGGAGGCGTCCCACTGCAATGCAAAGGTCCTTCGTTACTAGGGCCAACTCGTCCACCAACAGCTTCTTCACCTTTAAGTCCAAGAGCTTCTAAGGCAGTTGCATCAGGTCCTGCACCAGAATCTGGAACATCCGATGATCTGCAGCCAGCATCTCCATCAGATGAATCAGAAGCTCCAACACAAAGTACCCAAGGAATCGGACGACCACAGCTGACCCCATCAGCATCGAGTTTATCTTATGTTTCCCCACCATCAGTCCTACTGATAATGTTGGGAATCATGGTTTTCAATTCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

204

Amino Acids

20.71

Weight (kDa)

8.41

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48140 AT2G48140
fragaria_vesca FvH4_2g23210
malus_domestica MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica Prupe.8G237800_v2.0.a1
pyrus_communis pycom03g20940 pycom11g24990
rosa_chinensis RchiOBHm_Chr6g0290481
rosa_laevigata RLG00000012211
rosa_roxburghii Rroxscaffold_7G00177020
rosa_rugosa Rorug06G0212900 Rorug06G0212900
rosa_samantha Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana Rw6G028030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 434
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 3 cut(s) 88, 151, 499
AfiI CCNNNNNNNGG 2 cut(s) 176, 434
AgsI TTSAA 2 cut(s) 13, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 361, 393
AluBI AGCT 6 cut(s) 176, 302, 374, 398, 485, 523
AluI AGCT 6 cut(s) 176, 302, 374, 398, 485, 523
Alw21I GWGCWC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 94
AlwNI CAGNNNCTG 2 cut(s) 422, 434
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 353
ApaLI GTGCAC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 114, 454
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 338, 353, 419
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 133, 159, 372
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 338, 419
BaeGI GKGCMC 2 cut(s) 98, 212
BanI GGYRCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 126, 466
BccI CCATC 4 cut(s) 304, 475, 538, 571
BceAI ACGGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 350, 610
BfmI CTRYAG 1 cut(s) 452
BisI GCNGC 2 cut(s) 115, 455
BlsI GCNGC 2 cut(s) 116, 456
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 2 cut(s) 338, 419
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 338, 353, 419
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 422, 470, 545
BpiI GAAGAC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 434
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 2 cut(s) 185, 440
BseLI CCNNNNNNNGG 2 cut(s) 176, 434
BseMI GCAATG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 2 cut(s) 98, 212
BseXI GCAGC 2 cut(s) 126, 466
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 2 cut(s) 144, 213
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 176, 434
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 98, 212
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 355
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 93, 224
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 62, 402
BstEII GGTNACC 1 cut(s) 165
BstF5I GGATG 2 cut(s) 185, 440
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstPI GGTNACC 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 452
BstSLI GKGCMC 2 cut(s) 98, 212
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 126, 466
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 185, 440
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 459
CaiI CAGNNNCTG 2 cut(s) 422, 434
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 338, 353, 419
CseI GACGC 2 cut(s) 106, 307
Csp6I GTAC 3 cut(s) 87, 150, 498
CviAII CATG 3 cut(s) 126, 217, 592
CviJI RGCY 9 cut(s) 101, 176, 302, 355, 374, 398, 457, 485, 523
CviKI_1 RGCY 9 cut(s) 101, 176, 302, 355, 374, 398, 457, 485, 523
CviQI GTAC 3 cut(s) 87, 150, 498
DdeI CTNAG 2 cut(s) 62, 402
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 338, 419
Eco88I CYCGRG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 338, 419
EcoO65I GGTNACC 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 3 cut(s) 129, 220, 595
FaiI YATR 5 cut(s) 127, 218, 239, 552, 593
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 125, 216, 591
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 115, 455
FokI GGATG 2 cut(s) 192, 427
Fsp4HI GCNGC 2 cut(s) 115, 455
FspBI CTAG 2 cut(s) 350, 610
GlaI GCGC 1 cut(s) 285
GluI GCNGC 2 cut(s) 115, 455
HaeIII GGCC 1 cut(s) 355
HapII CCGG 2 cut(s) 144, 213
HgaI GACGC 2 cut(s) 106, 307
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 129, 220, 595
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 5 cut(s) 5, 431, 476, 507, 588
HpaII CCGG 2 cut(s) 144, 213
HphI GGTGA 3 cut(s) 133, 159, 372
Hpy166II GTNNAC 3 cut(s) 89, 96, 365
Hpy188I TCNGA 4 cut(s) 445, 472, 481, 512
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 3 cut(s) 89, 96, 365
HpyAV CCTTC 2 cut(s) 19, 351
HpyCH4III ACNGT 2 cut(s) 93, 224
HpyCH4V TGCA 7 cut(s) 96, 186, 328, 333, 413, 425, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 62, 402
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 129, 220, 595
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 2 cut(s) 126, 466
LweI GCATC 3 cut(s) 422, 470, 545
MaeI CTAG 2 cut(s) 350, 610
MaeIII GTNAC 3 cut(s) 118, 165, 345
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 3 cut(s) 224, 284, 369
MhlI GDGCHC 2 cut(s) 98, 212
MluCI AATT 3 cut(s) 39, 133, 601
MmeI TCCRAC 2 cut(s) 283, 512
MnlI CCTC 5 cut(s) 56, 112, 290, 306, 308
MseI TTAA 6 cut(s) 26, 72, 194, 203, 270, 386
MslI CAYNNNNRTG 2 cut(s) 215, 328
MspA1I CMGCKG 2 cut(s) 176, 523
MspI CCGG 2 cut(s) 144, 213
MspR9I CCNGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 129, 220, 595
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 118, 165
PaeR7I CTCGAG 1 cut(s) 297
PfeI GAWTC 5 cut(s) 5, 431, 476, 507, 588
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 2 cut(s) 116, 456
PpuMI RGGWCCY 2 cut(s) 338, 419
PsiI TTATAA 1 cut(s) 239
Psp5II RGGWCCY 2 cut(s) 338, 419
PspEI GGTNACC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 3 cut(s) 338, 353, 419
PspPPI RGGWCCY 2 cut(s) 338, 419
PspXI VCTCGAGB 1 cut(s) 297
PstI CTGCAG 1 cut(s) 456
PstNI CAGNNNCTG 2 cut(s) 422, 434
PvuII CAGCTG 2 cut(s) 176, 523
RsaI GTAC 3 cut(s) 88, 151, 499
RsaNI GTAC 3 cut(s) 87, 150, 498
RseI CAYNNNNRTG 2 cut(s) 215, 328
SaqAI TTAA 6 cut(s) 26, 72, 194, 203, 270, 386
SatI GCNGC 2 cut(s) 115, 455
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 3 cut(s) 338, 353, 419
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 2 cut(s) 98, 212
SetI ASST 9 cut(s) 178, 304, 340, 376, 385, 400, 421, 487, 525
SfaNI GCATC 3 cut(s) 422, 470, 545
SfcI CTRYAG 1 cut(s) 452
Sfr274I CTCGAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 338, 419
SlaI CTCGAG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 215, 328
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 39, 133, 601
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 350, 610
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 93, 224
TaqI TCGA 3 cut(s) 22, 298, 539
TasI AATT 3 cut(s) 39, 133, 601
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 5 cut(s) 5, 431, 476, 507, 588
Tru1I TTAA 6 cut(s) 26, 72, 194, 203, 270, 386
Tru9I TTAA 6 cut(s) 26, 72, 194, 203, 270, 386
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 118, 165
TseI GCWGC 2 cut(s) 114, 454
Tsp45I GTSAC 2 cut(s) 118, 165
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 338, 419
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 2 cut(s) 350, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.