RchiOBHm_Chr6g0290481

Non-specific lipid-transfer protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012814
Physical Location & Seq
Reverse (-)
53471698 .. 53472493
796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26062

Sequence Viewer

Length: 504 bp
ATGGAACCCTGCAAGCCCTTTCTTTCAGTTCTTGTAGTACTCATTTCACTGCTAATTTCAGTTAATGGGCAGATTAGTACACCATGCACAGCCTCAAAGCTTAGCACCTTAACTCCATGCTTGAATTATATAACTGGGAGTACCAACAATGGCTCATCGCCAACAGGGGACTGTTGCTATGCCCTAAAGACCAGCATGGACTGCGCTTGCCTTTTAGTAACCGCCAATGTTCCAATCCAACTGCCCATTAACAGAACCCTTGCTCTCTCTCTTCCTAAAGCATGTAAAATGGGGAGTGTGCCACTACAATGCAAAGCTTCTGCTACTCCTTTAGCTGCCCCAGGTCCTTCCTTACTAGGACCAACTATTTCCCCCACAGCTGCTGATTCTCCTTTAAGTCCAAGAGGTAATTCACCAATTGATTATTTGAAACTAGCTTCACTCAAAATTGTCCACCAATGCTTCCCAAGAAATTGTGCACTAATTCATATTTTGGTCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

167

Amino Acids

17.32

Weight (kDa)

8.81

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 104 1.9e-17 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 104 9.6e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48140 AT2G48140
fragaria_vesca FvH4_2g23210
malus_domestica MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica Prupe.8G237800_v2.0.a1
pyrus_communis pycom03g20940 pycom11g24990
rosa_chinensis RchiOBHm_Chr6g0290481
rosa_laevigata RLG00000012211
rosa_roxburghii Rroxscaffold_7G00177020
rosa_rugosa Rorug06G0212900 Rorug06G0212900
rosa_samantha Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana Rw6G028030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 500
AciI CCGC 1 cut(s) 222
AfaI GTAC 3 cut(s) 39, 79, 142
AgsI TTSAA 2 cut(s) 124, 430
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 5 cut(s) 100, 317, 335, 380, 437
AluI AGCT 5 cut(s) 100, 317, 335, 380, 437
Alw21I GWGCWC 1 cut(s) 481
Alw44I GTGCAC 1 cut(s) 477
AlwNI CAGNNNCTG 1 cut(s) 383
ApaLI GTGCAC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 335, 380
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 344, 359
AsuHPI GGTGA 1 cut(s) 405
AvaII GGWCC 2 cut(s) 344, 359
BaeGI GKGCMC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 322, 367
BciT130I CCWGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 356, 434
BisI GCNGC 2 cut(s) 336, 381
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 337, 382
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 344, 359
BmgT120I GGNCC 2 cut(s) 344, 359
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 2 cut(s) 322, 367
Bsh1236I CGCG 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 481
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 481
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 1 cut(s) 222
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 14, 208
BstDEI CTNAG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 481
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 322, 367
BtgZI GCGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 14, 208
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 344, 359
Csp6I GTAC 3 cut(s) 38, 78, 141
CviAII CATG 4 cut(s) 84, 117, 196, 282
CviJI RGCY 8 cut(s) 16, 92, 100, 153, 317, 335, 380, 437
CviKI_1 RGCY 8 cut(s) 16, 92, 100, 153, 317, 335, 380, 437
CviQI GTAC 3 cut(s) 38, 78, 141
DdeI CTNAG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 344, 359
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 4 cut(s) 87, 120, 199, 285
FaiI YATR 8 cut(s) 85, 118, 129, 131, 180, 197, 283, 489
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 83, 116, 195, 281
Fnu4HI GCNGC 2 cut(s) 336, 381
Fsp4HI GCNGC 2 cut(s) 336, 381
FspBI CTAG 2 cut(s) 356, 434
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 336, 381
HhaI GCGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 87, 120, 199, 285
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 98, 315
HinfI GANTC 1 cut(s) 386
HphI GGTGA 1 cut(s) 405
Hpy166II GTNNAC 3 cut(s) 80, 454, 479
Hpy8I GTNNAC 3 cut(s) 80, 454, 479
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 12, 87, 312, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 4 cut(s) 87, 120, 199, 285
HspAI GCGC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 22, 120, 150, 205, 327, 354
Lsp1109I GCAGC 2 cut(s) 322, 367
MaeI CTAG 2 cut(s) 356, 434
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 1 cut(s) 263
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 7 cut(s) 54, 124, 409, 417, 447, 472, 483
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 2 cut(s) 103, 398
MseI TTAA 4 cut(s) 63, 110, 249, 395
MslI CAYNNNNRTG 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 201
NlaIII CATG 4 cut(s) 87, 120, 199, 285
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 285
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 337, 382
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 344, 359
PspPPI RGGWCCY 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 3 cut(s) 39, 79, 142
RsaNI GTAC 3 cut(s) 38, 78, 141
RseI CAYNNNNRTG 1 cut(s) 307
SaqAI TTAA 4 cut(s) 63, 110, 249, 395
SatI GCNGC 2 cut(s) 336, 381
Sau96I GGNCC 2 cut(s) 344, 359
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 481
SetI ASST 8 cut(s) 102, 110, 319, 337, 346, 382, 409, 439
SinI GGWCC 2 cut(s) 344, 359
SmiMI CAYNNNNRTG 1 cut(s) 307
Sse9I AATT 7 cut(s) 54, 124, 409, 417, 447, 472, 483
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 356, 434
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 173
TasI AATT 7 cut(s) 54, 124, 409, 417, 447, 472, 483
TatI WGTACW 2 cut(s) 37, 77
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 63, 110, 249, 395
Tru9I TTAA 4 cut(s) 63, 110, 249, 395
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 335, 380
TspDTI ATGAA 1 cut(s) 476
TspRI CASTG 1 cut(s) 54
VneI GTGCAC 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 344, 359
XceI RCATGY 1 cut(s) 285
XspI CTAG 2 cut(s) 356, 434
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.