MD11G1281900.v1.1

Non-specific lipid-transfer protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012814
Physical Location & Seq
Reverse (-)
40063412 .. 40064664
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1281900.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGACTCATTCAAGGACTTTCGATTGAGTCTAATCCCAATTACCCTCCTTATCATTTCACTAAGATGGGTTAATGGGCAGATTAGTACACCATGCACAACCTCAATGATAAGCAGCATCACTCCATGCGTAAATTTCATCACCGGGAGTACAAGCAGCGGCGCACCACCGACAGCCGGATGTTGCAATTCGTTAAAGTCAATAATGGGCACGGGCACGGACTGCGCTTGTCTTCTTATAACCGGCGGTGTCCCTTTCCAACTGCCCATTAACCAAACCCTTGCGCTTTTCTCTTCCTCAAGTTTGTGGGATGGGAGCCGTCCCACTGCAATGCAAAGGTTCTCTGGGTTACTAGGGCCAACACCCCCACCAACAGCTTCTTCACCTCTAAGTCCAGGAGATTCTATGGCGGTTGCAGCAGGTCCTGCACCAGAATCTGGAACATCTGATGATCTGCAGCCAGCATCTCCATCAGATGAACCAGAAGCTCCAACACAAAGTACCAAAGGAGTCGGAAGACCACAGCTGACCCCATCAGCATCTAGTTTAACCTATGTTCCCCCACCATCTTTCATACTGATAATTTTGGGAATTATGGTTTTCAAGTCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

205

Amino Acids

21.04

Weight (kDa)

4.85

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 96 7.3e-15 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48140 AT2G48140
fragaria_vesca FvH4_2g23210
malus_domestica MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica Prupe.8G237800_v2.0.a1
pyrus_communis pycom03g20940 pycom11g24990
rosa_chinensis RchiOBHm_Chr6g0290481
rosa_laevigata RLG00000012211
rosa_roxburghii Rroxscaffold_7G00177020
rosa_rugosa Rorug06G0212900 Rorug06G0212900
rosa_samantha Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana Rw6G028030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 3 cut(s) 159, 246, 410
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 88, 151, 502
AfiI CCNNNNNNNGG 2 cut(s) 176, 437
AgsI TTSAA 2 cut(s) 13, 604
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 3 cut(s) 377, 488, 526
AluI AGCT 3 cut(s) 377, 488, 526
AlwNI CAGNNNCTG 2 cut(s) 425, 437
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 4 cut(s) 114, 156, 416, 457
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 3 cut(s) 164, 227, 286
AspS9I GGNCC 2 cut(s) 356, 422
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 133, 375
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 2 cut(s) 212, 218
BbsI GAAGAC 2 cut(s) 224, 523
BbvI GCAGC 4 cut(s) 126, 168, 428, 469
BccI CCATC 5 cut(s) 60, 305, 478, 541, 574
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 353, 543
BfmI CTRYAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 5 cut(s) 115, 157, 160, 417, 458
BlsI GCNGC 5 cut(s) 116, 158, 161, 418, 459
Bme1390I CCNGG 2 cut(s) 145, 396
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 356, 422
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 145, 396
BmsI GCATC 3 cut(s) 126, 473, 548
BpiI GAAGAC 2 cut(s) 224, 523
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 437
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 185, 316
BseLI CCNNNNNNNGG 2 cut(s) 176, 437
BseMI GCAATG 1 cut(s) 336
BseSI GKGCMC 2 cut(s) 212, 218
BseXI GCAGC 4 cut(s) 126, 168, 428, 469
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 3 cut(s) 144, 177, 243
BslFI GGGAC 2 cut(s) 236, 306
BslI CCNNNNNNNGG 2 cut(s) 176, 437
BsmFI GGGAC 2 cut(s) 236, 306
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 212, 218
Bsp143I GATC 1 cut(s) 451
BspACI CCGC 3 cut(s) 159, 246, 410
BspANI GGCC 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 317
BspMAI CTGCAG 1 cut(s) 459
BspMI ACCTGC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssMI GATC 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 298
BstAPI GCANNNNNTGC 2 cut(s) 222, 425
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 62, 389
BstF5I GGATG 2 cut(s) 185, 316
BstHHI GCGC 3 cut(s) 164, 227, 286
BstKTI GATC 1 cut(s) 454
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 3 cut(s) 222, 416, 425
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 143, 394
BstSFI CTRYAG 1 cut(s) 455
BstSLI GKGCMC 2 cut(s) 212, 218
BstV1I GCAGC 4 cut(s) 126, 168, 428, 469
BstV2I GAAGAC 2 cut(s) 224, 523
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 185, 316
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 2 cut(s) 425, 437
CfoI GCGC 3 cut(s) 164, 227, 286
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 356, 422
Csp6I GTAC 3 cut(s) 87, 150, 501
CviAII CATG 2 cut(s) 93, 126
CviJI RGCY 7 cut(s) 176, 318, 358, 377, 460, 488, 526
CviKI_1 RGCY 7 cut(s) 176, 318, 358, 377, 460, 488, 526
CviQI GTAC 3 cut(s) 87, 150, 501
DdeI CTNAG 2 cut(s) 62, 389
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 96, 129
FaiI YATR 7 cut(s) 94, 127, 239, 407, 555, 575, 596
FaqI GGGAC 2 cut(s) 236, 306
FatI CATG 2 cut(s) 92, 125
Fnu4HI GCNGC 5 cut(s) 115, 157, 160, 417, 458
FokI GGATG 2 cut(s) 192, 323
Fsp4HI GCNGC 5 cut(s) 115, 157, 160, 417, 458
FspBI CTAG 2 cut(s) 353, 543
GlaI GCGC 3 cut(s) 163, 226, 285
GluI GCNGC 5 cut(s) 115, 157, 160, 417, 458
HaeIII GGCC 1 cut(s) 358
HapII CCGG 3 cut(s) 144, 177, 243
HhaI GCGC 3 cut(s) 164, 227, 286
Hin1II CATG 2 cut(s) 96, 129
Hin6I GCGC 3 cut(s) 162, 225, 284
HinP1I GCGC 3 cut(s) 162, 225, 284
HinfI GANTC 5 cut(s) 5, 28, 401, 434, 510
HpaII CCGG 3 cut(s) 144, 177, 243
HphI GGTGA 2 cut(s) 133, 375
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 448, 475, 515
Hpy188III TCNNGA 1 cut(s) 438
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4V TGCA 7 cut(s) 96, 186, 329, 334, 416, 428, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 416, 425
HpyF3I CTNAG 2 cut(s) 62, 389
Hsp92II CATG 2 cut(s) 96, 129
HspAI GCGC 3 cut(s) 162, 225, 284
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 2 cut(s) 315, 493
Lsp1109I GCAGC 4 cut(s) 126, 168, 428, 469
LweI GCATC 3 cut(s) 126, 473, 548
MaeI CTAG 2 cut(s) 353, 543
MaeIII GTNAC 1 cut(s) 348
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 4 cut(s) 224, 285, 372, 528
MhlI GDGCHC 2 cut(s) 212, 218
MluCI AATT 5 cut(s) 39, 133, 187, 582, 591
MlyI GAGTC 2 cut(s) 37, 519
MmeI TCCRAC 3 cut(s) 283, 493, 515
MnlI CCTC 4 cut(s) 56, 112, 307, 396
MseI TTAA 4 cut(s) 72, 194, 270, 548
MslI CAYNNNNRTG 2 cut(s) 64, 329
MspA1I CMGCKG 2 cut(s) 159, 526
MspI CCGG 3 cut(s) 144, 177, 243
MspR9I CCNGG 2 cut(s) 145, 396
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 222, 416, 425
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 451
NlaIII CATG 2 cut(s) 96, 129
NlaIV GGNNCC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 401, 434
PflMI CCANNNNNTGG 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 5 cut(s) 116, 158, 161, 418, 459
PleI GAGTC 2 cut(s) 36, 518
PpsI GAGTC 2 cut(s) 36, 518
PpuMI RGGWCCY 1 cut(s) 422
PsiI TTATAA 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 2 cut(s) 356, 422
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 459
PstNI CAGNNNCTG 2 cut(s) 425, 437
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 3 cut(s) 88, 151, 502
RsaNI GTAC 3 cut(s) 87, 150, 501
RseI CAYNNNNRTG 2 cut(s) 64, 329
SaqAI TTAA 4 cut(s) 72, 194, 270, 548
SatI GCNGC 5 cut(s) 115, 157, 160, 417, 458
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 2 cut(s) 356, 422
SchI GAGTC 2 cut(s) 37, 519
ScrFI CCNGG 2 cut(s) 145, 396
SduI GDGCHC 2 cut(s) 212, 218
SetI ASST 8 cut(s) 104, 341, 379, 388, 424, 490, 528, 554
SfaNI GCATC 3 cut(s) 126, 473, 548
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 64, 329
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 5 cut(s) 39, 133, 187, 582, 591
SsiI CCGC 3 cut(s) 159, 246, 410
SspMI CTAG 2 cut(s) 353, 543
StyD4I CCNGG 2 cut(s) 143, 394
TaqI TCGA 1 cut(s) 22
TasI AATT 5 cut(s) 39, 133, 187, 582, 591
TatI WGTACW 2 cut(s) 86, 149
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 401, 434
Tru1I TTAA 4 cut(s) 72, 194, 270, 548
Tru9I TTAA 4 cut(s) 72, 194, 270, 548
TscAI CASTG 1 cut(s) 331
TseI GCWGC 4 cut(s) 114, 156, 416, 457
TspDTI ATGAA 3 cut(s) 127, 492, 562
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 133
XspI CTAG 2 cut(s) 353, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.