Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Forward (+)

57545 .. 58924

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCGACCCAATGATCATGTCTCACTCCTCACCTAAATCCAGAAACACCCGTAATAAATCTTCATCATCACCAACCTGTTCCAAATTCCCTGTCTGCGACGGATCTCAGTCCGCTGCTATCGACGTCGTGATCCTTATCGCGGTCATCACCGCCTGCGGCTTCCTCTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTTTCAGATCTCTCTCTTTTAGTCAAACAAGAGATTTTGCAGAACCCGATTGTGTATGGATCATTAGCTTTGAGTATCTTCTGTGCTGCCATCTCTACTTGGCTTGTTATACTCTTGTGTACTATGCAGAGATGCGGCAAACCGAATTGTAAAGGCCTTAGGAAAGCTGTTGAGTTTGATATTCAGCTTGAGACTGAGGAATGCGTCAAGAGCTCCAGCAACAAGAGGGGAATGTTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCTGAGCTGAAGAAGATGGCTCCGCCTAATGGGCGAGCCGTGCTTGTTTTCAGAGCGAGGTGTGGTTGTTCTGTAAGGAGATTAGTCGTTTCCGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.85

Weight (kDa)

9.61

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	179
AciI	CCGC	6 cut(s)	150, 179, 189, 195, 384, 542
AclWI	GGATC	3 cut(s)	148, 163, 316
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	178, 514, 548
AluBI	AGCT	7 cut(s)	18, 317, 416, 436, 462, 521, 526
AluI	AGCT	7 cut(s)	18, 317, 416, 436, 462, 521, 526
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	63, 434
AlwI	GGATC	3 cut(s)	148, 163, 316
AoxI	GGCC	2 cut(s)	403, 614
ApeKI	GCWGC	3 cut(s)	152, 335, 625
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	5 cut(s)	60, 99, 178, 220, 497
AxyI	CCTNAGG	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
BauI	CACGAG	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	139, 322, 637
BccI	CCATC	2 cut(s)	347, 529
BceAI	ACGGC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	63, 434
BglI	GCCNNNNNGGC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	5 cut(s)	153, 196, 336, 385, 626
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	5 cut(s)	154, 197, 337, 386, 627
Bme1390I	CCNGG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	448
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 514, 548
Bse21I	CCTNAGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	239
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	178, 514, 548
BseMII	CTCAG	3 cut(s)	158, 435, 513
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	139, 322, 637
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	405, 616
BshVI	ATCGAT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	612
BslI	CCNNNNNNNGG	3 cut(s)	178, 514, 548
BsmAI	GTCTC	2 cut(s)	63, 434
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	405, 616
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	6 cut(s)	150, 179, 189, 195, 384, 542
BspANI	GGCC	2 cut(s)	405, 616
BspCNI	CTCAG	3 cut(s)	157, 436, 514
BspDI	ATCGAT	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	3 cut(s)	148, 163, 316
BssMI	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	193, 555
BstDEI	CTNAG	4 cut(s)	144, 407, 444, 522
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	6 cut(s)	54, 143, 171, 259, 311, 639
BstMAI	GTCTC	2 cut(s)	63, 434
BstMBI	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
BstMWI	GCNNNNNNNGC	4 cut(s)	459, 550, 559, 622
BstSCI	CCNGG	1 cut(s)	611
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	139, 322, 637
BstX2I	RGATCY	2 cut(s)	140, 256
BstYI	RGATCY	2 cut(s)	140, 256
Bsu15I	ATCGAT	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	405, 616
BsuTUI	ATCGAT	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	193, 555
Cfr13I	GGNCC	1 cut(s)	614
ClaI	ATCGAT	1 cut(s)	239
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	1 cut(s)	55
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	4 cut(s)	144, 407, 444, 522
DpnI	GATC	6 cut(s)	53, 142, 170, 258, 310, 638
DpnII	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	464
FaeI	CATG	1 cut(s)	58
FaiI	YATR	6 cut(s)	7, 15, 56, 306, 359, 374
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	5 cut(s)	153, 196, 336, 385, 626
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	153, 196, 336, 385, 626
GluI	GCNGC	5 cut(s)	153, 196, 336, 385, 626
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	405, 616
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	5 cut(s)	60, 99, 178, 220, 497
Hpy166II	GTNNAC	2 cut(s)	43, 369
Hpy188I	TCNGA	2 cut(s)	256, 572
Hpy188III	TCNNGA	4 cut(s)	78, 166, 457, 640
Hpy8I	GTNNAC	2 cut(s)	43, 369
Hpy99I	CGWCG	4 cut(s)	44, 140, 164, 167
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	2 cut(s)	162, 216
HpyCH4V	TGCA	4 cut(s)	13, 33, 289, 376
HpyF10VI	GCNNNNNNNGC	4 cut(s)	459, 550, 559, 622
HpyF3I	CTNAG	4 cut(s)	144, 407, 444, 522
HpySE526I	ACGT	2 cut(s)	162, 216
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
LmnI	GCTCC	2 cut(s)	467, 544
LpnPI	CCDG	6 cut(s)	91, 127, 141, 205, 478, 625
Lsp1109I	GCAGC	3 cut(s)	139, 322, 637
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	2 cut(s)	162, 216
MalI	GATC	6 cut(s)	53, 142, 170, 258, 310, 638
MboI	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
MboII	GAAGA	7 cut(s)	90, 196, 199, 319, 541, 544, 646
MflI	RGATCY	2 cut(s)	140, 256
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	34, 122, 394, 512
MnlI	CCTC	9 cut(s)	76, 212, 238, 242, 439, 468, 504, 570, 624
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	459, 550, 559, 622
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	154, 197, 337, 386, 627
Psp124BI	GAGCTC	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	614
PsuI	RGATCY	2 cut(s)	140, 256
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	5 cut(s)	153, 196, 336, 385, 626
Sau3AI	GATC	6 cut(s)	51, 140, 168, 256, 308, 636
Sau96I	GGNCC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	34, 122, 394, 512
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	6 cut(s)	150, 179, 189, 195, 384, 542
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	2 cut(s)	165, 219
TaqI	TCGA	3 cut(s)	42, 159, 239
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	34, 122, 394, 512
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	2 cut(s)	198, 387
TseI	GCWGC	3 cut(s)	152, 335, 625
TspDTI	ATGAA	2 cut(s)	90, 491
TspGWI	ACGGA	2 cut(s)	28, 153
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.