Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Forward (+)

36388941 .. 36390536

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTATATTTGCACAGCTCAATCTCGGTCTGCAACTCCGTTGACCAAAACGCTCCCATGTCCGATTCCATGACCCTAATCGACTCGGGCACTAAATCTAAACAGTCCAGTCATGTACACAGGAGCAGGAAGATGTCCAATTCGTCTCCCAATTGCTCCAAACTCCCCGTCTGCGATCGATCTCGATCGGCAGTGATTGATGTAGTTCTGTTCATTGCTGTGATCGGCGCTTGCGGGTTTCTTTTGTTTCCTTATGCGAAAGTCATCTTGGTCAAGACAATCGAAATCGCGGGGATTGTTATGTATGTGTTGAGGGAGGAGGTTTCTCATGCTCCCTTGGTTTATGGGTCGATGGGGCTCAGCATTTTGTGTGCCGCATTGGCTGCGTGGGCGCTGTTGGCCTGCACCAGTAGGAAATGTGGGAATCCGAGTTGCAAAGGGTTGAGAAAAGCCGCCGAGTTTGACATTCAGCTGGAGACAGAGGAGTGTGTGAAGAATTCGGCTTCGGTAGGTAAGGATGGAGTGAAGAAGGGGCTGTTTGAATTGCCGAGGGATCACCATAGGGAGTTGGAGGCTGAGCTTAAGAAGATGGCGCCGCCGAATGGGAGAGCAGTTCTGGTGTTTCGAGCCAGGTGTGGGTGTTCTGTTGGGAGATTGGAAGTTCCGGGGCCTCGGAGGGTAAAGAAGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.2

Weight (kDa)

9.43

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	1 cut(s)	290
AciI	CCGC	5 cut(s)	234, 290, 375, 453, 596
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	593
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	602, 636
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	3 cut(s)	18, 472, 580
AluI	AGCT	3 cut(s)	18, 472, 580
Alw26I	GTCTC	2 cut(s)	150, 470
AlwI	GGATC	1 cut(s)	561
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	399, 668
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspLEI	GCGC	3 cut(s)	230, 394, 595
AspS9I	GGNCC	1 cut(s)	668
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	346, 512, 583
BciT130I	CCWGG	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	150, 470
BfoI	RGCGCY	3 cut(s)	231, 395, 596
BfrI	CTTAAG	1 cut(s)	581
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	4 cut(s)	375, 384, 453, 596
BlpI	GCTNAGC	2 cut(s)	359, 576
BlsI	GCNGC	4 cut(s)	376, 385, 454, 597
Bme1390I	CCNGG	2 cut(s)	631, 666
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	594, 669
BmrFI	CCNGG	2 cut(s)	631, 666
BpmI	CTGGAG	1 cut(s)	494
Bpu1102I	GCTNAGC	2 cut(s)	359, 576
BpuMI	CCSGG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	4 cut(s)	336, 548, 665, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 636
Bse1I	ACTGG	2 cut(s)	108, 408
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	631
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	4 cut(s)	336, 548, 665, 671
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	602, 636
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	373, 567
BseNI	ACTGG	2 cut(s)	108, 408
BseRI	GAGGAG	2 cut(s)	332, 497
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	2 cut(s)	178, 188
BshFI	GGCC	2 cut(s)	401, 670
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	2 cut(s)	178, 188
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	602, 636
BsmAI	GTCTC	2 cut(s)	150, 470
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	401, 670
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	92, 360
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
Bsp1720I	GCTNAGC	2 cut(s)	359, 576
BspACI	CCGC	5 cut(s)	234, 290, 375, 453, 596
BspANI	GGCC	2 cut(s)	401, 670
BspCNI	CTCAG	2 cut(s)	372, 568
BspDI	ATCGAT	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	594, 669
BspPI	GGATC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	108, 408
BssECI	CCNNGG	4 cut(s)	336, 548, 665, 671
BssMI	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	232, 403
BstDEI	CTNAG	2 cut(s)	359, 576
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	3 cut(s)	231, 395, 596
BstHHI	GCGC	3 cut(s)	230, 394, 595
BstKTI	GATC	6 cut(s)	178, 182, 188, 225, 556, 690
BstMAI	GTCTC	2 cut(s)	150, 470
BstMBI	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
BstMCI	CGRYCG	2 cut(s)	178, 188
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 383, 389, 398
BstNI	CCWGG	1 cut(s)	631
BstSCI	CCNGG	2 cut(s)	629, 664
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	401, 670
BsuTUI	ATCGAT	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	232, 403
CfoI	GCGC	3 cut(s)	230, 394, 595
Cfr13I	GGNCC	1 cut(s)	668
ClaI	ATCGAT	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	4 cut(s)	58, 70, 113, 329
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	359, 576
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	6 cut(s)	177, 181, 187, 224, 555, 689
DpnII	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	4 cut(s)	61, 73, 116, 332
FatI	CATG	4 cut(s)	57, 69, 112, 328
FauI	CCCGC	2 cut(s)	227, 283
Fnu4HI	GCNGC	4 cut(s)	375, 384, 453, 596
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	4 cut(s)	375, 384, 453, 596
GlaI	GCGC	3 cut(s)	229, 393, 594
GluI	GCNGC	4 cut(s)	375, 384, 453, 596
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	3 cut(s)	231, 395, 596
HaeIII	GGCC	2 cut(s)	401, 670
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	3 cut(s)	230, 394, 595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	4 cut(s)	61, 73, 116, 332
Hin6I	GCGC	3 cut(s)	228, 392, 593
HinP1I	GCGC	3 cut(s)	228, 392, 593
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	65, 83, 424
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	43, 118
Hpy188I	TCNGA	3 cut(s)	64, 429, 675
Hpy188III	TCNNGA	3 cut(s)	183, 274, 691
Hpy8I	GTNNAC	2 cut(s)	43, 118
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	13, 33, 405, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 383, 389, 398
HpyF3I	CTNAG	2 cut(s)	359, 576
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	4 cut(s)	61, 73, 116, 332
HspAI	GCGC	3 cut(s)	228, 392, 593
KasI	GGCGCC	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
LmnI	GCTCC	4 cut(s)	58, 123, 161, 337
Lsp1109I	GCAGC	1 cut(s)	370
MalI	GATC	6 cut(s)	177, 181, 187, 224, 555, 689
MboI	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
MboII	GAAGA	5 cut(s)	142, 505, 538, 598, 697
MfeI	CAATTG	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	92, 360
MluCI	AATT	4 cut(s)	139, 151, 496, 542
Mly113I	GGCGCC	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	8 cut(s)	306, 310, 313, 475, 543, 565, 669, 681
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	472
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	631, 666
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	631
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	380, 383, 389, 398
NarI	GGCGCC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
NlaIII	CATG	4 cut(s)	61, 73, 116, 332
NlaIV	GGNNCC	2 cut(s)	594, 669
NmeAIII	GCCGAG	2 cut(s)	481, 573
PfeI	GAWTC	2 cut(s)	65, 424
PkrI	GCNGC	4 cut(s)	376, 385, 454, 597
Ple19I	CGATCG	2 cut(s)	178, 188
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	594, 669
PspPI	GGNCC	1 cut(s)	668
PvuI	CGATCG	2 cut(s)	178, 188
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	4 cut(s)	375, 384, 453, 596
Sau3AI	GATC	6 cut(s)	175, 179, 185, 222, 553, 687
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	631, 666
SduI	GDGCHC	2 cut(s)	92, 360
SetI	ASST	6 cut(s)	20, 324, 474, 514, 582, 635
SfoI	GGCGCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	4 cut(s)	139, 151, 496, 542
SsiI	CCGC	5 cut(s)	234, 290, 375, 453, 596
SspDI	GGCGCC	1 cut(s)	592
StyD4I	CCNGG	2 cut(s)	629, 664
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	6 cut(s)	81, 178, 184, 282, 350, 625
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	139, 151, 496, 542
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	3 cut(s)	377, 455, 598
TfiI	GAWTC	2 cut(s)	65, 424
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.