Rroxscaffold_7G00207580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007784
Physical Location & Seq
Reverse (-)
57503615 .. 57504480
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207580.1

Sequence Viewer

Length: 330 bp
ATGTCAGATTCGATGAGCATAATCGACTCGGGTGTTAAATCTAAACAAACCAATCATGTACAGTCAGTACAGAGGAGCATAAACATTGGGGAACTTGGAAGGCTCACTTCGTTAGGGAAGTTTATACTGAATTCTGAATACAATAAACTCTATGGGGGTATAGCTCAGGATCTTGAATCACTGACTGAAACGCCGGCGCTAGTCTCCGATCACCGCCCGACTATCGCCAGCGATTTTTCGAACCTTGCCTATCACCCTCCACCGCCAACCCAACCCATCCTCTTCGTTTCTCGCATCCAACCACCGAGCTCGAAGAATAAGCGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.97

Weight (kDa)

9.1

Isoelectric Point (pI)

68.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 214, 263, 322
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 2 cut(s) 60, 69
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 2 cut(s) 164, 309
AluI AGCT 2 cut(s) 164, 309
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 28
ApoI RAATTY 1 cut(s) 130
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 203, 245
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 311
BccI CCATC 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 2 cut(s) 200, 328
BfoI RGCGCY 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 193
BseGI GGATG 2 cut(s) 276, 294
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 169, 208
BspACI CCGC 3 cut(s) 214, 263, 322
BspCNI CTCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 193
BssMI GATC 2 cut(s) 169, 208
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 195, 229
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 276, 294
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 172, 211
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 169, 208
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 2 cut(s) 276, 294
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 195, 229
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 59, 68
CviAII CATG 1 cut(s) 56
CviJI RGCY 3 cut(s) 103, 164, 309
CviKI_1 RGCY 3 cut(s) 103, 164, 309
CviQI GTAC 2 cut(s) 59, 68
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 171, 210
DpnII GATC 2 cut(s) 169, 208
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 1 cut(s) 59
FaiI YATR 6 cut(s) 20, 57, 80, 125, 153, 161
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FatI CATG 1 cut(s) 55
FokI GGATG 2 cut(s) 263, 281
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 2 cut(s) 200, 328
GlaI GCGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 200
HapII CCGG 1 cut(s) 194
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 3 cut(s) 8, 26, 176
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 203, 245
Hpy188I TCNGA 3 cut(s) 7, 136, 208
Hpy188III TCNNGA 2 cut(s) 167, 173
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 169, 208
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 152, 207, 241
LweI GCATC 1 cut(s) 303
MaeI CTAG 2 cut(s) 200, 328
MalI GATC 2 cut(s) 171, 210
MboI GATC 2 cut(s) 169, 208
MboII GAAGA 2 cut(s) 274, 325
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 3 cut(s) 66, 267, 290
MreI CGCCGGCG 1 cut(s) 193
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 194
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 2 cut(s) 169, 208
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 1 cut(s) 59
NspV TTCGAA 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 8, 176
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 60, 69
RsaNI GTAC 2 cut(s) 59, 68
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 169, 208
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 311
SetI ASST 4 cut(s) 166, 246, 311, 329
SfaNI GCATC 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 239
SgrAI CRCCGGYG 1 cut(s) 193
SinI GGWCC 1 cut(s) 324
Sse9I AATT 1 cut(s) 130
SsiI CCGC 3 cut(s) 214, 263, 322
SspMI CTAG 2 cut(s) 200, 328
SstI GAGCTC 1 cut(s) 311
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 4 cut(s) 11, 24, 239, 311
TasI AATT 1 cut(s) 130
TatI WGTACW 2 cut(s) 58, 67
TfiI GAWTC 2 cut(s) 8, 176
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 186
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 130
XspI CTAG 2 cut(s) 200, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.