Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

66237336 .. 66238082

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0532100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACTAGTGCTAGAAGTCCGAGCAGAGGTCTCAAAATCTGTTGCCTTGTTACTGCTATTTTCTTAGTAATAGCCCTCATCGTCATGACGATATTGGCACTCACCGTTTTCAAGCCTAAACAACCCGAGATCAATGCCCGACCCGTTGGCCTTGAAAACATTCAATATACACTCTTTCTGAATGTGACACTAAATGTGACGCTAAGCATGCTCGTCACGATAAATAATAGGAATTATGGAAATTTTAGTTTCAAGAACGCCACGACATATGTTACTTATCACGACACAGTTGTAGGCTTGGTTCCGATGGAGCATGCCTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTATGTGGATCTTATGGGCGACAAGTTGATTTCAAACCCTCATTTCATGGAAGATGTGAATACTGGGATTTTCAATTTGATCTCGACTGCTGATTTACATGGCACTACACCAATTTTGTTATCAGACAACGGCAAAAAACCGTTGTGTGATTTGATGTATAACCGTTGTAGAGTGAGCCGTTGTCTGATGAAAAATCAGACAACGGTGGAACACAGTTGTGTGATAAACACACAGACAACAGGTATGTGTTATAACTGTTGTTTGATAGCTCGGCAGATGCCAAGCGCGCAGCTGCGCAGCAGTTTAGGGGCGTCTTCAGACAACAGTGCCAGTTTGCAACCGTTGTATGTTAATCATGTCAGACAACATTTTTTTATTTTGTCTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.53

Weight (kDa)

9.0

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc16I	TGCGCA	1 cut(s)	650
AccII	CGCG	1 cut(s)	641
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	665
AfiI	CCNNNNNNNGG	2 cut(s)	26, 332
AgsI	TTSAA	6 cut(s)	112, 155, 164, 253, 387, 427
AhlI	ACTAGT	1 cut(s)	5
AleI	CACNNNNGTG	2 cut(s)	356, 570
AluBI	AGCT	2 cut(s)	623, 646
AluI	AGCT	2 cut(s)	623, 646
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	3 cut(s)	643, 646, 651
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	3 cut(s)	641, 643, 651
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	125
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	633, 655, 663
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	499, 516
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcoDI	GTCTC	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 12
BisI	GCNGC	3 cut(s)	644, 647, 652
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	3 cut(s)	645, 648, 653
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 332
Bse1I	ACTGG	2 cut(s)	421, 684
BseLI	CCNNNNNNNGG	2 cut(s)	26, 332
BseNI	ACTGG	2 cut(s)	421, 684
BsePI	GCGCGC	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	633, 655, 663
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	26, 332
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	129, 361, 432
Bsp1720I	GCTNAGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	421, 684
BssHII	GCGCGC	1 cut(s)	639
BssMI	GATC	3 cut(s)	129, 361, 432
BssNI	GRCGYC	1 cut(s)	665
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	9 cut(s)	106, 289, 495, 518, 559, 569, 611, 680, 696
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	3 cut(s)	209, 315, 641
BstDEI	CTNAG	2 cut(s)	64, 203
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	641
BstHHI	GCGC	3 cut(s)	641, 643, 651
BstKTI	GATC	3 cut(s)	132, 364, 435
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	129, 361, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 640
BstNSI	RCATGY	2 cut(s)	211, 317
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	633, 655, 663
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	209, 315, 641
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	3 cut(s)	641, 643, 651
CseI	GACGC	2 cut(s)	208, 654
CviAII	CATG	6 cut(s)	85, 208, 314, 400, 452, 710
CviJI	RGCY	7 cut(s)	74, 115, 150, 297, 531, 623, 646
CviKI_1	RGCY	7 cut(s)	74, 115, 150, 297, 531, 623, 646
DdeI	CTNAG	2 cut(s)	64, 203
DpnI	GATC	3 cut(s)	131, 363, 434
DpnII	GATC	3 cut(s)	129, 361, 432
Eco31I	GGTCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	330
FaeI	CATG	6 cut(s)	88, 211, 317, 403, 455, 713
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	6 cut(s)	84, 207, 313, 399, 451, 709
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	644, 647, 652
Fsp4HI	GCNGC	3 cut(s)	644, 647, 652
FspBI	CTAG	2 cut(s)	6, 12
FspI	TGCGCA	1 cut(s)	650
GlaI	GCGC	3 cut(s)	640, 642, 650
GluI	GCNGC	3 cut(s)	644, 647, 652
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	2 cut(s)	208, 654
HhaI	GCGC	3 cut(s)	641, 643, 651
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	6 cut(s)	88, 211, 317, 403, 455, 713
Hin6I	GCGC	3 cut(s)	639, 641, 649
HinP1I	GCGC	3 cut(s)	639, 641, 649
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	9 cut(s)	21, 180, 306, 478, 540, 552, 673, 716, 746
Hpy188III	TCNNGA	5 cut(s)	85, 217, 253, 281, 436
HpyCH4III	ACNGT	9 cut(s)	106, 289, 495, 518, 559, 569, 611, 680, 696
HpyCH4V	TGCA	2 cut(s)	329, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 640
HpyF3I	CTNAG	2 cut(s)	64, 203
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	6 cut(s)	88, 211, 317, 403, 455, 713
HspAI	GCGC	3 cut(s)	639, 641, 649
Kzo9I	GATC	3 cut(s)	129, 361, 432
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	339, 402, 579, 697
Lsp1109I	GCAGC	3 cut(s)	633, 655, 663
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	2 cut(s)	6, 12
MaeIII	GTNAC	5 cut(s)	49, 184, 196, 214, 271
MalI	GATC	3 cut(s)	131, 363, 434
MboI	GATC	3 cut(s)	129, 361, 432
MboII	GAAGA	2 cut(s)	416, 660
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	4 cut(s)	232, 241, 427, 465
MnlI	CCTC	4 cut(s)	20, 86, 326, 402
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	3 cut(s)	83, 356, 570
MspA1I	CMGCKG	1 cut(s)	646
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	2 cut(s)	208, 640
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	129, 361, 432
NlaIII	CATG	6 cut(s)	88, 211, 317, 403, 455, 713
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	184, 196, 214
NsbI	TGCGCA	1 cut(s)	650
NspI	RCATGY	2 cut(s)	211, 317
OliI	CACNNNNGTG	2 cut(s)	356, 570
PaeI	GCATGC	2 cut(s)	211, 317
PagI	TCATGA	1 cut(s)	84
PauI	GCGCGC	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	645, 648, 653
PsiI	TTATAA	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	1 cut(s)	361
PteI	GCGCGC	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	646
RseI	CAYNNNNRTG	3 cut(s)	83, 356, 570
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	644, 647, 652
Sau3AI	GATC	3 cut(s)	129, 361, 432
SetI	ASST	5 cut(s)	31, 356, 598, 625, 648
SfaNI	GCATC	1 cut(s)	621
SmiMI	CAYNNNNRTG	3 cut(s)	83, 356, 570
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	2 cut(s)	211, 317
Sse9I	AATT	4 cut(s)	232, 241, 427, 465
SspMI	CTAG	2 cut(s)	6, 12
TaaI	ACNGT	9 cut(s)	106, 289, 495, 518, 559, 569, 611, 680, 696
TaqI	TCGA	1 cut(s)	437
TasI	AATT	4 cut(s)	232, 241, 427, 465
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	3 cut(s)	184, 196, 214
TseI	GCWGC	3 cut(s)	643, 646, 651
Tsp45I	GTSAC	3 cut(s)	184, 196, 214
TspDTI	ATGAA	2 cut(s)	388, 557
TspRI	CASTG	1 cut(s)	685
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	2 cut(s)	211, 317
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	2 cut(s)	6, 12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.