Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

2635325 .. 2635723

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTATGTGCTGAGGGAGGAGGTTTCGAATGCTCCGTTGGTGTACGGATGTATGGGACTCAGCATGTGCTGTGCGGCATTGGCCGCTTGGGCTCTGCTGGCCTGCACCAGCAGAAAGTGTGGGAATCCCAATTGCAAGGGCCTCCGAAAGGCAGCTGAATTCGACATTCAACTAGAGACGGAGGAGTGCGTGAAGAATTCAGCTTCGGCGGTTAAGGACGGAGTGAAGAAGGGCCTATTCGAATTGCCTCGCGATCACCACCGCGAATTGGAGGCTGAGCTTAAGAAGATGGCACCTACTAATGGGAGAGCAGTGCTCTTGTTTCGGGCTAGGTGCGGGTGTTCTGTTGGTAGATTGGAAGTTCCGGGACCGAAGAAGCTTAAAAGGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.49

Weight (kDa)

9.33

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	2 cut(s)	252, 264
AciI	CCGC	5 cut(s)	74, 84, 209, 262, 336
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	158, 196
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	3 cut(s)	148, 268, 302
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	4 cut(s)	155, 203, 280, 379
AluI	AGCT	4 cut(s)	155, 203, 280, 379
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	4 cut(s)	81, 99, 139, 232
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	158, 196
AspS9I	GGNCC	3 cut(s)	139, 232, 368
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	248
AsuII	TTCGAA	2 cut(s)	26, 240
AvaII	GGWCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	173, 330
BfrI	CTTAAG	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	3 cut(s)	75, 84, 153
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	3 cut(s)	76, 85, 154
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	139, 232, 368
BmiI	GGNNCC	2 cut(s)	294, 369
BmrFI	CCNGG	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	2 cut(s)	26, 240
BpuMI	CCSGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 268, 302
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	148, 268, 302
BseMII	CTCAG	2 cut(s)	73, 267
BseRI	GAGGAG	2 cut(s)	32, 197
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	252, 264
BshFI	GGCC	4 cut(s)	83, 101, 141, 234
BshNI	GGYRCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	69, 381
BslI	CCNNNNNNNGG	3 cut(s)	148, 268, 302
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	69, 381
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	4 cut(s)	83, 101, 141, 234
Bsp119I	TTCGAA	2 cut(s)	26, 240
Bsp1286I	GDGCHC	2 cut(s)	94, 318
Bsp143I	GATC	2 cut(s)	253, 387
Bsp1720I	GCTNAGC	1 cut(s)	276
Bsp68I	TCGCGA	1 cut(s)	252
BspACI	CCGC	5 cut(s)	74, 84, 209, 262, 336
BspANI	GGCC	4 cut(s)	83, 101, 141, 234
BspCNI	CTCAG	2 cut(s)	72, 268
BspFNI	CGCG	2 cut(s)	252, 264
BspLI	GGNNCC	2 cut(s)	294, 369
BspPI	GGATC	1 cut(s)	395
BspT104I	TTCGAA	2 cut(s)	26, 240
BspT107I	GGYRCC	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	281
BssMI	GATC	2 cut(s)	253, 387
BstAFI	CTTAAG	1 cut(s)	281
BstBI	TTCGAA	2 cut(s)	26, 240
BstC8I	GCNNGC	2 cut(s)	99, 103
BstDEI	CTNAG	3 cut(s)	11, 59, 276
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	2 cut(s)	252, 264
BstKTI	GATC	2 cut(s)	256, 390
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	253, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 98
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	2 cut(s)	252, 264
BstV1I	GCAGC	1 cut(s)	164
BsuRI	GGCC	4 cut(s)	83, 101, 141, 234
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	99, 103
Cfr13I	GGNCC	3 cut(s)	139, 232, 368
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	3 cut(s)	11, 59, 276
DpnI	GATC	2 cut(s)	255, 389
DpnII	GATC	2 cut(s)	253, 387
EaeI	YGGCCR	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	2 cut(s)	139, 232
EcoRI	GAATTC	2 cut(s)	158, 196
EcoT38I	GRGCYC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	6, 53, 65
FaqI	GGGAC	2 cut(s)	69, 381
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	3 cut(s)	75, 84, 153
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	75, 84, 153
FspBI	CTAG	2 cut(s)	173, 330
GluI	GCNGC	3 cut(s)	75, 84, 153
HaeIII	GGCC	4 cut(s)	83, 101, 141, 234
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	57, 124
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	251, 391
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	105, 135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 98
HpyF3I	CTNAG	3 cut(s)	11, 59, 276
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	253, 387
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	4 cut(s)	83, 115, 121, 378
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	173, 330
MalI	GATC	2 cut(s)	255, 389
MboI	GATC	2 cut(s)	253, 387
MboII	GAAGA	4 cut(s)	205, 238, 298, 385
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	94, 318
MluCI	AATT	5 cut(s)	130, 158, 196, 242, 266
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	6, 10, 13, 152, 175, 258, 265
MseI	TTAA	3 cut(s)	213, 282, 381
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	34
MvnI	CGCG	2 cut(s)	252, 264
MwoI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 98
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	253, 387
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	294, 369
NruI	TCGCGA	1 cut(s)	252
NspI	RCATGY	1 cut(s)	67
NspV	TTCGAA	2 cut(s)	26, 240
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	76, 85, 154
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	294, 369
PspPI	GGNCC	3 cut(s)	139, 232, 368
PvuII	CAGCTG	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	213, 282, 381
SatI	GCNGC	3 cut(s)	75, 84, 153
Sau3AI	GATC	2 cut(s)	253, 387
Sau96I	GGNCC	3 cut(s)	139, 232, 368
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	94, 318
SetI	ASST	7 cut(s)	24, 157, 205, 282, 298, 335, 381
SfuI	TTCGAA	2 cut(s)	26, 240
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	5 cut(s)	130, 158, 196, 242, 266
SsiI	CCGC	5 cut(s)	74, 84, 209, 262, 336
SspMI	CTAG	2 cut(s)	173, 330
StyD4I	CCNGG	1 cut(s)	364
TaqI	TCGA	3 cut(s)	26, 162, 240
TaqII	GACCGA	1 cut(s)	385
TasI	AATT	5 cut(s)	130, 158, 196, 242, 266
TauI	GCSGC	2 cut(s)	77, 86
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	213, 282, 381
Tru9I	TTAA	3 cut(s)	213, 282, 381
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	1 cut(s)	152
TspGWI	ACGGA	4 cut(s)	24, 60, 194, 234
TspRI	CASTG	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	158, 196
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	2 cut(s)	173, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.