Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

3488330 .. 3489186

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1052400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTATATATCCATAGCTCAATCTCGGTCTGCAACTCCGTTGACCAACCAAACACTCCCATGGCGGATTCAATGAGTTTAACCGACCCAAGTGCCAAATCCAGGCAAACCAACCATGTTCAAGGAAGAAGAAAGATACCCAATTCTCCCAATTGCTCAAAAGCTCCGTCTTGCGATCGATCTCGATGGGCTTTGATGATCGATATTGTGTTGTTTATTGCTGTGGTTGTTGCTTTTGGATATTTGCTATTGCCGTATGTGAAGTTTGTATCTGTTAAGACAATTGAAATTGTGAAAATAATCATGTATGTGCTGAGGGAGGAGGTTTCGAATGCTCCGTTGGTGTACGGATGTATGGGACTCAGCATGTGCTGTGCGGCACTGGCCGCTTGGGCTCTGCTGGCCTGCACCAGCAGGACGTGTGGGAATCCCAATTGCAAGGGCCTCCGAAAGGCAGCTGAATTCGACATTCAGCTAGAGACGGAGGAGTGCGTGAAGAATTCAGCTTCGGCGGTTAAGGACGCAGTGAAGAAGGGCCTATTCGAATTGCCTCGCGATCACCACCGCGAATTGGAGGCCGAGCTTAAGAAGATGGCACCTCCTAATGGGAGAGCAGTGCTCTTGTTTCGGGCTAGGTGCGGGTGTTCTGTTGGTAGGTTGGAAGTTCCCGGACCGAAGAAGCTTAAAAGGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.67

Weight (kDa)

9.37

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccII	CGCG	2 cut(s)	555, 567
AciI	CCGC	6 cut(s)	65, 377, 387, 512, 565, 639
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	461, 499
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	102, 451, 571, 605
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	72, 122, 287
AjiI	CACGTC	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	18, 164, 458, 475, 506, 583, 682
AluI	AGCT	7 cut(s)	18, 164, 458, 475, 506, 583, 682
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	5 cut(s)	384, 402, 442, 535, 576
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	2 cut(s)	461, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspS9I	GGNCC	3 cut(s)	442, 535, 671
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	2 cut(s)	329, 543
AvaII	GGWCC	1 cut(s)	671
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	2 cut(s)	180, 586
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	476, 633
BfrI	CTTAAG	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	378, 387, 456
BlsI	GCNGC	3 cut(s)	379, 388, 457
Bme1390I	CCNGG	2 cut(s)	103, 669
Bme18I	GGWCC	1 cut(s)	671
BmgBI	CACGTC	1 cut(s)	420
BmgT120I	GGNCC	3 cut(s)	442, 535, 671
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	103, 669
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	2 cut(s)	329, 543
BpuMI	CCSGG	1 cut(s)	669
Bsa29I	ATCGAT	2 cut(s)	178, 201
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 451, 571, 605
Bse1I	ACTGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	2 cut(s)	178, 201
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	4 cut(s)	102, 451, 571, 605
BseMII	CTCAG	2 cut(s)	305, 376
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	335, 500
BseXI	GCAGC	1 cut(s)	467
BsgI	GTGCAG	1 cut(s)	391
Bsh1236I	CGCG	2 cut(s)	555, 567
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	5 cut(s)	386, 404, 444, 537, 578
BshNI	GGYRCC	1 cut(s)	595
BshVI	ATCGAT	2 cut(s)	178, 201
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	4 cut(s)	102, 451, 571, 605
BsmAI	GTCTC	1 cut(s)	473
BsmBI	CGTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	5 cut(s)	386, 404, 444, 537, 578
Bsp119I	TTCGAA	2 cut(s)	329, 543
Bsp1286I	GDGCHC	2 cut(s)	397, 621
Bsp143I	GATC	5 cut(s)	175, 179, 198, 556, 690
Bsp19I	CCATGG	1 cut(s)	60
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	6 cut(s)	65, 377, 387, 512, 565, 639
BspANI	GGCC	5 cut(s)	386, 404, 444, 537, 578
BspCNI	CTCAG	2 cut(s)	306, 375
BspDI	ATCGAT	2 cut(s)	178, 201
BspFNI	CGCG	2 cut(s)	555, 567
BspLI	GGNNCC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	698
BspT104I	TTCGAA	2 cut(s)	329, 543
BspT107I	GGYRCC	1 cut(s)	595
BspTI	CTTAAG	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	175, 179, 198, 556, 690
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	103
BstAFI	CTTAAG	1 cut(s)	584
BstBI	TTCGAA	2 cut(s)	329, 543
BstC8I	GCNNGC	2 cut(s)	402, 406
BstDEI	CTNAG	2 cut(s)	314, 362
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	2 cut(s)	555, 567
BstKTI	GATC	5 cut(s)	178, 182, 201, 559, 693
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	5 cut(s)	175, 179, 198, 556, 690
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 386, 392, 401
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	101, 667
BstUI	CGCG	2 cut(s)	555, 567
BstV1I	GCAGC	1 cut(s)	467
Bsu15I	ATCGAT	2 cut(s)	178, 201
BsuRI	GGCC	5 cut(s)	386, 404, 444, 537, 578
BsuTUI	ATCGAT	2 cut(s)	178, 201
BtgI	CCRYGG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	356
BtsI	GCAGTG	2 cut(s)	531, 621
BtsIMutI	CAGTG	3 cut(s)	380, 531, 621
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	2 cut(s)	402, 406
Cfr13I	GGNCC	3 cut(s)	442, 535, 671
ClaI	ATCGAT	2 cut(s)	178, 201
CpoI	CGGWCCG	1 cut(s)	671
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	346
CspI	CGGWCCG	1 cut(s)	671
CviAII	CATG	4 cut(s)	61, 116, 304, 367
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	314, 362
DpnI	GATC	5 cut(s)	177, 181, 200, 558, 692
DpnII	GATC	5 cut(s)	175, 179, 198, 556, 690
EaeI	YGGCCR	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	671
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	2 cut(s)	442, 535
EcoRI	GAATTC	2 cut(s)	461, 499
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	4 cut(s)	64, 119, 307, 370
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	4 cut(s)	60, 115, 303, 366
FauI	CCCGC	1 cut(s)	632
Fnu4HI	GCNGC	3 cut(s)	378, 387, 456
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	378, 387, 456
FspBI	CTAG	2 cut(s)	476, 633
GluI	GCNGC	3 cut(s)	378, 387, 456
HaeIII	GGCC	5 cut(s)	386, 404, 444, 537, 578
HapII	CCGG	1 cut(s)	669
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	64, 119, 307, 370
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	3 cut(s)	68, 360, 427
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	43, 346
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	3 cut(s)	183, 554, 694
Hpy8I	GTNNAC	2 cut(s)	43, 346
HpyAV	CCTTC	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	33, 408, 438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 386, 392, 401
HpyF3I	CTNAG	2 cut(s)	314, 362
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	64, 119, 307, 370
Kzo9I	GATC	5 cut(s)	175, 179, 198, 556, 690
LmnI	GCTCC	2 cut(s)	169, 340
LpnPI	CCDG	8 cut(s)	88, 115, 368, 386, 400, 418, 424, 682
Lsp1109I	GCAGC	1 cut(s)	467
MaeI	CTAG	2 cut(s)	476, 633
MaeII	ACGT	1 cut(s)	419
MalI	GATC	5 cut(s)	177, 181, 200, 558, 692
MboI	GATC	5 cut(s)	175, 179, 198, 556, 690
MboII	GAAGA	6 cut(s)	138, 141, 508, 541, 601, 688
MfeI	CAATTG	3 cut(s)	151, 282, 433
MhlI	GDGCHC	2 cut(s)	397, 621
MluCI	AATT	9 cut(s)	142, 151, 282, 288, 433, 461, 499, 545, 569
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	309, 313, 316, 455, 478, 561, 568, 609
MseI	TTAA	5 cut(s)	80, 276, 516, 585, 684
MslI	CAYNNNNRTG	2 cut(s)	59, 308
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	2 cut(s)	103, 669
MunI	CAATTG	3 cut(s)	151, 282, 433
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	555, 567
MwoI	GCNNNNNNNGC	4 cut(s)	383, 386, 392, 401
NciI	CCSGG	1 cut(s)	669
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	175, 179, 198, 556, 690
NlaIII	CATG	4 cut(s)	64, 119, 307, 370
NlaIV	GGNNCC	1 cut(s)	597
NmeAIII	GCCGAG	1 cut(s)	604
NruI	TCGCGA	1 cut(s)	555
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	2 cut(s)	329, 543
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	68, 427
PfoI	TCCNGGA	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	379, 388, 457
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	3 cut(s)	442, 535, 671
PvuI	CGATCG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	458
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	59, 308
Rsr2I	CGGWCCG	1 cut(s)	671
RsrII	CGGWCCG	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	80, 276, 516, 585, 684
SatI	GCNGC	3 cut(s)	378, 387, 456
Sau3AI	GATC	5 cut(s)	175, 179, 198, 556, 690
Sau96I	GGNCC	3 cut(s)	442, 535, 671
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	103, 669
SduI	GDGCHC	2 cut(s)	397, 621
SfuI	TTCGAA	2 cut(s)	329, 543
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	59, 308
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	9 cut(s)	142, 151, 282, 288, 433, 461, 499, 545, 569
SsiI	CCGC	6 cut(s)	65, 377, 387, 512, 565, 639
SspMI	CTAG	2 cut(s)	476, 633
StyD4I	CCNGG	2 cut(s)	101, 667
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	6 cut(s)	178, 184, 201, 329, 465, 543
TaqII	GACCGA	2 cut(s)	16, 688
TasI	AATT	9 cut(s)	142, 151, 282, 288, 433, 461, 499, 545, 569
TauI	GCSGC	2 cut(s)	380, 389
TfiI	GAWTC	2 cut(s)	68, 427
Tru1I	TTAA	5 cut(s)	80, 276, 516, 585, 684
Tru9I	TTAA	5 cut(s)	80, 276, 516, 585, 684
TscAI	CASTG	3 cut(s)	387, 531, 621
TseI	GCWGC	1 cut(s)	455
TspGWI	ACGGA	5 cut(s)	28, 156, 327, 363, 497
TspRI	CASTG	3 cut(s)	387, 531, 621
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	671
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	2 cut(s)	461, 499
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	2 cut(s)	476, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.