Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

4952881 .. 4955027

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTATATTTCCAGAACTCAATCTCCCTCGTAGACCAATCTCCAATCATGGCTCACTCACCAGATTTTCATCATCATTCAAAACAATCAAGAACCAGCAGCAGCAACAGAAAGTCATCATCGTCAAGCTGTTCTTCAAATTTCTCTGTTTGCTGTGACGGATCTAGATCAGCTGCTATCGATGTTGTGATCTTAATCGCTGTGATCACATCCTCCGGGTTTTTAATCTTCCCTTACATCAAATTCATCACTATCAAATCTGTTGAAATCTTCTCTGAGCTCTCTTGTTTAGTGAAAGAAGAGATTTTGCGTAACCCTGATCCAATTGTCTACGGTTTAATAGCTTTGAGTATCTCGTGTACTGCGTTATCTGCTTGGATGATTGTTATACTACTGTGTAGTCGTCATCGATGTGGGAAACCGAACTGTAAAGGGCTTAGGAAAGCTAATGCTGAGTTTGATATTCAGTTAGAGACTGAGGATTGTGTTAAGAGCTCTAATAGTGGCAAGAGTGTTAGTAAGAAGGGTTTGTTTGAGTTGCCTCGTGATCATCACCGTGAGTTAGAGGCGGAGTTGAAGAAGATGGCTCCACCTAATGGGCGAGCCGTGCTTGTTTTTCGGGCTAAATGTGGGTGTTCGGTTGGGAGATTAGAGGTTCCTGGACCTAAGAAGCAGCAACTGCAGCAAAGGAAGGTTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.86

Weight (kDa)

9.36

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	2 cut(s)	33, 330
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	2 cut(s)	169, 314
AcsI	RAATTY	2 cut(s)	139, 242
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	81, 138, 266, 577
AjnI	CCWGG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	6 cut(s)	129, 173, 280, 344, 446, 495
AluI	AGCT	6 cut(s)	129, 173, 280, 344, 446, 495
Alw21I	GWGCWC	2 cut(s)	282, 497
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	169, 314
AlwNI	CAGNNNCTG	1 cut(s)	679
ApeKI	GCWGC	5 cut(s)	99, 102, 173, 673, 682
ApoI	RAATTY	2 cut(s)	139, 242
AspS9I	GGNCC	1 cut(s)	662
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	51, 545
AvaII	GGWCC	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	282, 497
BauI	CACGAG	2 cut(s)	355, 543
Bbv12I	GWGCWC	2 cut(s)	282, 497
BbvI	GCAGC	5 cut(s)	111, 114, 160, 685, 694
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	1 cut(s)	590
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	2 cut(s)	204, 547
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	680
BisI	GCNGC	5 cut(s)	100, 103, 174, 674, 683
BlsI	GCNGC	5 cut(s)	101, 104, 175, 675, 684
Bme1390I	CCNGG	2 cut(s)	217, 660
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	588, 657
BmrFI	CCNGG	2 cut(s)	217, 660
Bpu10I	CCTNAGC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	2 cut(s)	180, 409
BsaBI	GATNNNNATC	3 cut(s)	69, 166, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse8I	GATNNNNATC	3 cut(s)	69, 166, 194
BseBI	CCWGG	1 cut(s)	660
BseCI	ATCGAT	2 cut(s)	180, 409
BseGI	GGATG	2 cut(s)	209, 384
BseJI	GATNNNNATC	3 cut(s)	69, 166, 194
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	3 cut(s)	267, 444, 468
BseXI	GCAGC	5 cut(s)	111, 114, 160, 685, 694
BshVI	ATCGAT	2 cut(s)	180, 409
BsiHKAI	GWGCWC	2 cut(s)	282, 497
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmAI	GTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	282, 497
Bsp143I	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
BspACI	CCGC	1 cut(s)	569
BspCNI	CTCAG	3 cut(s)	268, 445, 469
BspDI	ATCGAT	2 cut(s)	180, 409
BspLI	GGNNCC	2 cut(s)	588, 657
BspMAI	CTGCAG	1 cut(s)	684
BspPI	GGATC	2 cut(s)	169, 314
BssMI	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
BssSI	CACGAG	2 cut(s)	355, 543
Bst2BI	CACGAG	2 cut(s)	355, 543
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	335, 396, 428, 557
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	5 cut(s)	276, 437, 453, 477, 666
BstF5I	GGATG	2 cut(s)	209, 384
BstKTI	GATC	6 cut(s)	164, 170, 192, 207, 322, 550
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 607, 679, 682
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	215, 658
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	5 cut(s)	111, 114, 160, 685, 694
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
Bsu15I	ATCGAT	2 cut(s)	180, 409
BsuTUI	ATCGAT	2 cut(s)	180, 409
BtsCI	GGATG	2 cut(s)	209, 384
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	662
ClaI	ATCGAT	2 cut(s)	180, 409
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	5 cut(s)	276, 437, 453, 477, 666
DpnI	GATC	6 cut(s)	163, 169, 191, 206, 321, 549
DpnII	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	584
Ecl136II	GAGCTC	2 cut(s)	280, 495
Eco24I	GRGCYC	2 cut(s)	282, 497
Eco47I	GGWCC	1 cut(s)	662
Eco53kI	GAGCTC	2 cut(s)	280, 495
EcoICRI	GAGCTC	2 cut(s)	280, 495
EcoRII	CCWGG	1 cut(s)	658
EcoT38I	GRGCYC	2 cut(s)	282, 497
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	7, 50, 389
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	2 cut(s)	204, 547
FblI	GTMKAC	2 cut(s)	33, 330
Fnu4HI	GCNGC	5 cut(s)	100, 103, 174, 674, 683
FokI	GGATG	2 cut(s)	196, 391
FriOI	GRGCYC	2 cut(s)	282, 497
Fsp4HI	GCNGC	5 cut(s)	100, 103, 174, 674, 683
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	5 cut(s)	100, 103, 174, 674, 683
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	1 cut(s)	52
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	2 cut(s)	51, 545
Hpy166II	GTNNAC	3 cut(s)	34, 331, 360
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	4 cut(s)	13, 90, 165, 545
Hpy8I	GTNNAC	3 cut(s)	34, 331, 360
HpyAV	CCTTC	2 cut(s)	517, 685
HpyCH4III	ACNGT	4 cut(s)	335, 396, 428, 557
HpyCH4V	TGCA	1 cut(s)	682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 607, 679, 682
HpyF3I	CTNAG	5 cut(s)	276, 437, 453, 477, 666
Hsp92II	CATG	1 cut(s)	52
Ksp22I	TGATCA	2 cut(s)	204, 547
Kzo9I	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	7 cut(s)	26, 75, 109, 229, 330, 645, 672
Lsp1109I	GCAGC	5 cut(s)	111, 114, 160, 685, 694
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	155, 311
MalI	GATC	6 cut(s)	163, 169, 191, 206, 321, 549
MboI	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
MboII	GAAGA	6 cut(s)	126, 220, 262, 311, 589, 592
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	282, 497
MluCI	AATT	3 cut(s)	139, 242, 324
MnlI	CCTC	6 cut(s)	38, 223, 472, 552, 559, 646
MseI	TTAA	5 cut(s)	194, 224, 338, 489, 696
MslI	CAYNNNNRTG	2 cut(s)	411, 555
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	217, 660
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	371, 607, 679, 682
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	588, 657
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	5 cut(s)	101, 104, 175, 675, 684
Psp124BI	GAGCTC	2 cut(s)	282, 497
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	588, 657
PspPI	GGNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	2 cut(s)	411, 555
SacI	GAGCTC	2 cut(s)	282, 497
SaqAI	TTAA	5 cut(s)	194, 224, 338, 489, 696
SatI	GCNGC	5 cut(s)	100, 103, 174, 674, 683
Sau3AI	GATC	6 cut(s)	161, 167, 189, 204, 319, 547
Sau96I	GGNCC	1 cut(s)	662
ScrFI	CCNGG	2 cut(s)	217, 660
SduI	GDGCHC	2 cut(s)	282, 497
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	411, 555
Sse9I	AATT	3 cut(s)	139, 242, 324
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	2 cut(s)	282, 497
StyD4I	CCNGG	2 cut(s)	215, 658
TaaI	ACNGT	4 cut(s)	335, 396, 428, 557
TaqI	TCGA	2 cut(s)	180, 409
TasI	AATT	3 cut(s)	139, 242, 324
TatI	WGTACW	1 cut(s)	359
Tru1I	TTAA	5 cut(s)	194, 224, 338, 489, 696
Tru9I	TTAA	5 cut(s)	194, 224, 338, 489, 696
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	99, 102, 173, 673, 682
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	59, 235
TspGWI	ACGGA	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	2 cut(s)	139, 242
XbaI	TCTAGA	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	33, 330
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.