Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234087.1

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 560

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234087.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 560 bp

ccaattctgccaattgctccaaaacccaggcctgcgatcgatctcgatcggctgtgattgatgtggtcttgttcattgctgtgatcggcgcctgtgggtttctgatgtttccgtatgcgaaaatcatctccgtcaagacgatcgaaatcgctgggattgttatgtatgtgatgagggaggaggtttctcatgctcctttggtgtatgggtcaatggggctcagcattttgtgtgccgcattggctgcttgggctctgttggcctgcaccagtaggaaatgtgggaatcccgattgcaaagggctgcgaaaagccgccgagtttgacattcagctggagacagaggagtgtgtgaagaattcggctgcgttaggtaaggatggagtcaagaaggggctgtttgaattgccgagggatcaccaccgggagctggaggctgagcttaagaagatggcaccgccgaatgggcgagcagtgctcgtgtttcgagcaaggtgtgggtgttctgttgggagattggaagttccggggcctcggaggatcaaaaagatcaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.09

Weight (kDa)

9.31

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	88, 453
AciI	CCGC	3 cut(s)	236, 314, 457
AclWI	GGATC	2 cut(s)	422, 547
AcsI	RAATTY	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	429, 463
AflII	CTTAAG	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	333, 429, 441
AluI	AGCT	3 cut(s)	333, 429, 441
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	422, 547
AoxI	GGCC	3 cut(s)	29, 260, 529
ApeKI	GCWGC	3 cut(s)	244, 303, 364
ApoI	RAATTY	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	2 cut(s)	424, 527
AsuHPI	GGTGA	1 cut(s)	409
BanI	GGYRCC	2 cut(s)	88, 453
BanII	GRGCYC	2 cut(s)	221, 255
BauI	CACGAG	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	231, 290, 351
BccI	CCATC	2 cut(s)	373, 444
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	2 cut(s)	424, 527
BcoDI	GTCTC	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	442
BglI	GCCNNNNNGGC	2 cut(s)	241, 465
BisI	GCNGC	5 cut(s)	236, 245, 304, 314, 365
BlpI	GCTNAGC	2 cut(s)	220, 437
BlsI	GCNGC	5 cut(s)	237, 246, 305, 315, 366
Bme1390I	CCNGG	3 cut(s)	28, 424, 527
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	3 cut(s)	90, 455, 530
BmrFI	CCNGG	3 cut(s)	28, 424, 527
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	2 cut(s)	355, 451
Bpu1102I	GCTNAGC	2 cut(s)	220, 437
BpuMI	CCSGG	2 cut(s)	424, 527
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	2 cut(s)	45, 145
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	26, 409, 526, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 463
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	74
Bse8I	GATNNNNATC	2 cut(s)	45, 145
BseBI	CCWGG	1 cut(s)	28
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	4 cut(s)	26, 409, 526, 532
BseGI	GGATG	1 cut(s)	384
BseJI	GATNNNNATC	2 cut(s)	45, 145
BseLI	CCNNNNNNNGG	2 cut(s)	429, 463
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	234, 428
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	193, 358
BseXI	GCAGC	3 cut(s)	231, 290, 351
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	249
Bsh1285I	CGRYCG	3 cut(s)	39, 49, 143
BshFI	GGCC	3 cut(s)	31, 262, 531
BshNI	GGYRCC	2 cut(s)	88, 453
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	3 cut(s)	39, 49, 143
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	423, 526
BslI	CCNNNNNNNGG	2 cut(s)	429, 463
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	31, 262, 531
Bsp1286I	GDGCHC	3 cut(s)	221, 255, 479
Bsp143I	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
Bsp1720I	GCTNAGC	2 cut(s)	220, 437
BspACI	CCGC	3 cut(s)	236, 314, 457
BspANI	GGCC	3 cut(s)	31, 262, 531
BspCNI	CTCAG	2 cut(s)	233, 429
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	90, 455, 530
BspPI	GGATC	2 cut(s)	422, 547
BspT107I	GGYRCC	2 cut(s)	88, 453
BspTI	CTTAAG	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	26, 409, 526, 532
BssMI	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	33, 264, 470
BstDEI	CTNAG	2 cut(s)	220, 437
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	8 cut(s)	39, 43, 49, 86, 143, 417, 542, 551
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
BstMCI	CGRYCG	3 cut(s)	39, 49, 143
BstMWI	GCNNNNNNNGC	6 cut(s)	241, 244, 250, 259, 465, 474
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	26, 422, 525
BstV1I	GCAGC	3 cut(s)	231, 290, 351
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	31, 262, 531
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	33, 264, 470
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	39
CviAII	CATG	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	220, 437
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	8 cut(s)	38, 42, 48, 85, 142, 416, 541, 550
DpnII	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	221, 255
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	26
EcoT38I	GRGCYC	2 cut(s)	221, 255
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	116, 163, 167, 191, 206
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	236, 245, 304, 314, 365
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	2 cut(s)	221, 255
Fsp4HI	GCNGC	5 cut(s)	236, 245, 304, 314, 365
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	5 cut(s)	236, 245, 304, 314, 365
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	2 cut(s)	355, 451
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	31, 262, 531
HapII	CCGG	2 cut(s)	423, 526
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	285, 383
HpaII	CCGG	2 cut(s)	423, 526
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	104, 536
Hpy188III	TCNNGA	5 cut(s)	44, 135, 289, 387, 552
HpyAV	CCTTC	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	266, 296
HpyF10VI	GCNNNNNNNGC	6 cut(s)	241, 244, 250, 259, 465, 474
HpyF3I	CTNAG	2 cut(s)	220, 437
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	89
KasI	GGCGCC	1 cut(s)	88
Kzo9I	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
LmnI	GCTCC	3 cut(s)	22, 198, 426
Lsp1109I	GCAGC	3 cut(s)	231, 290, 351
MalI	GATC	8 cut(s)	38, 42, 48, 85, 142, 416, 541, 550
MboI	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
MboII	GAAGA	2 cut(s)	366, 459
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	3 cut(s)	221, 255, 479
MluCI	AATT	4 cut(s)	3, 12, 357, 403
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	8 cut(s)	167, 171, 174, 336, 404, 426, 530, 542
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	2 cut(s)	423, 526
MspR9I	CCNGG	3 cut(s)	28, 424, 527
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	6 cut(s)	241, 244, 250, 259, 465, 474
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	424, 527
NdeII	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	3 cut(s)	90, 455, 530
NmeAIII	GCCGAG	2 cut(s)	342, 434
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	5 cut(s)	237, 246, 305, 315, 366
Ple19I	CGATCG	3 cut(s)	39, 49, 143
PleI	GAGTC	1 cut(s)	391
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	90, 455, 530
PspPI	GGNCC	1 cut(s)	529
PvuI	CGATCG	3 cut(s)	39, 49, 143
PvuII	CAGCTG	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	5 cut(s)	236, 245, 304, 314, 365
Sau3AI	GATC	8 cut(s)	36, 40, 46, 83, 140, 414, 539, 548
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	3 cut(s)	28, 424, 527
SduI	GDGCHC	3 cut(s)	221, 255, 479
SetI	ASST	6 cut(s)	185, 335, 375, 431, 443, 496
SfoI	GGCGCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	4 cut(s)	3, 12, 357, 403
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	236, 314, 457
SspDI	GGCGCC	1 cut(s)	88
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	26, 422, 525
TaqI	TCGA	4 cut(s)	39, 45, 143, 486
TasI	AATT	4 cut(s)	3, 12, 357, 403
TauI	GCSGC	2 cut(s)	238, 316
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	479
TseI	GCWGC	3 cut(s)	244, 303, 364
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	2 cut(s)	101, 120
TspRI	CASTG	1 cut(s)	479
Vha464I	CTTAAG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.