Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Forward (+)

85356077 .. 85359882

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG624100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTATATTTCCATAGCTCAATCTCGGTCTGCAACTCCGTTGACCAGAACGCTCCCATGTCTGATTCGATGAGCTTGATCGACCCGGGTGTTAAATCTAAACAGACCAATCACGTACAGAGGAGCAGAAGGATGCCCAATTCTGCCAATTGCTCCAAAACCCAGGCCTGCGATCGATCTCGATCGGCTGTGATTGATGTAGTCTTGTTCATTGCTGTGATGGGCGCCTGCGGGTTTTTGATGTTTCCGTATGCGAAAATCATCTCCGTCAAGACGATCGAAATCGCTGGGATTGTTATGTATGTGATGAGGGAGGAGGTTTCTCATGCTCCTTTGGTGTATGGGTCAATGGGGCTCAGCATTTTGTGTGCCGCATTGGCTGCTTGGGCTCTGTTGGCCTGCACCAGTAGGAAATGTGGGAATCCCGATTGCAAAGGGCTGCGAAAAGCCGCCGAGTTTGACATTCAGCTGGAGACGGAGGAGTGTGTGAAGAATTCGGCTGCGTTAGGTAAGGATGGAGTCAAGAAGGGGCTGTTTGAATTGCCGAGGGATCACCACCGGGAACTGGAGGCTGAGCTTAAGAAGATGGCACCGCCGAATGGGCGAGCAGTGCTCGTGTTTCGAGCAAGGTGTGGGTGTTCTGTTGGGAGATTGGAAGTTCCGGGGCCTCGGAGGATCAAAAGGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.29

Weight (kDa)

9.39

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 589
AciI	CCGC	4 cut(s)	231, 372, 450, 593
AclWI	GGATC	3 cut(s)	558, 683, 692
AcsI	RAATTY	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	565, 599
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	18, 75, 469, 577
AluI	AGCT	4 cut(s)	18, 75, 469, 577
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	3 cut(s)	558, 683, 692
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	3 cut(s)	165, 396, 665
ApeKI	GCWGC	3 cut(s)	380, 439, 500
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	665
AsuC2I	CCSGG	4 cut(s)	86, 87, 560, 663
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	85
BanI	GGYRCC	2 cut(s)	224, 589
BanII	GRGCYC	2 cut(s)	357, 391
BauI	CACGAG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	367, 426, 487
BccI	CCATC	3 cut(s)	214, 509, 580
BciT130I	CCWGG	1 cut(s)	164
BcnI	CCSGG	4 cut(s)	86, 87, 560, 663
BcoDI	GTCTC	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	578
BglI	GCCNNNNNGGC	2 cut(s)	377, 601
BisI	GCNGC	5 cut(s)	372, 381, 440, 450, 501
BlpI	GCTNAGC	2 cut(s)	356, 573
BlsI	GCNGC	5 cut(s)	373, 382, 441, 451, 502
Bme1390I	CCNGG	5 cut(s)	86, 87, 164, 560, 663
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	3 cut(s)	226, 591, 666
BmrFI	CCNGG	5 cut(s)	86, 87, 164, 560, 663
BmsI	GCATC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	597, 629
BpmI	CTGGAG	2 cut(s)	491, 587
Bpu1102I	GCTNAGC	2 cut(s)	356, 573
BpuMI	CCSGG	4 cut(s)	86, 87, 560, 663
Bsa29I	ATCGAT	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	2 cut(s)	181, 281
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	85, 162, 545, 662, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 599
Bse1I	ACTGG	2 cut(s)	405, 570
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	2 cut(s)	181, 281
BseBI	CCWGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	5 cut(s)	85, 162, 545, 662, 668
BseGI	GGATG	2 cut(s)	138, 520
BseJI	GATNNNNATC	2 cut(s)	181, 281
BseLI	CCNNNNNNNGG	2 cut(s)	565, 599
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	370, 564
BseNI	ACTGG	2 cut(s)	405, 570
BseRI	GAGGAG	3 cut(s)	136, 329, 494
BseXI	GCAGC	3 cut(s)	367, 426, 487
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	385
Bsh1285I	CGRYCG	3 cut(s)	175, 185, 279
BshFI	GGCC	3 cut(s)	167, 398, 667
BshNI	GGYRCC	2 cut(s)	224, 589
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	3 cut(s)	175, 185, 279
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	86, 559, 662
BslI	CCNNNNNNNGG	2 cut(s)	565, 599
BsmAI	GTCTC	1 cut(s)	467
BsmBI	CGTCTC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	167, 398, 667
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	357, 391, 615
Bsp143I	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
Bsp1720I	GCTNAGC	2 cut(s)	356, 573
BspACI	CCGC	4 cut(s)	231, 372, 450, 593
BspANI	GGCC	3 cut(s)	167, 398, 667
BspCNI	CTCAG	2 cut(s)	369, 565
BspDI	ATCGAT	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	226, 591, 666
BspPI	GGATC	3 cut(s)	558, 683, 692
BspT107I	GGYRCC	2 cut(s)	224, 589
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	405, 570
BssECI	CCNNGG	5 cut(s)	85, 162, 545, 662, 668
BssMI	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	578
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	169, 229, 400, 606
BstDEI	CTNAG	2 cut(s)	356, 573
BstF5I	GGATG	2 cut(s)	138, 520
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	8 cut(s)	81, 175, 179, 185, 279, 553, 678, 687
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
BstMCI	CGRYCG	3 cut(s)	175, 185, 279
BstMWI	GCNNNNNNNGC	6 cut(s)	377, 380, 386, 395, 601, 610
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	5 cut(s)	84, 85, 162, 558, 661
BstV1I	GCAGC	3 cut(s)	367, 426, 487
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	167, 398, 667
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	138, 520
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	4 cut(s)	169, 229, 400, 606
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	665
Cfr9I	CCCGGG	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	58, 326
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	356, 573
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	8 cut(s)	80, 174, 178, 184, 278, 552, 677, 686
DpnII	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	357, 391
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	357, 391
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	2 cut(s)	61, 329
FaiI	YATR	8 cut(s)	7, 15, 59, 252, 299, 303, 327, 342
FatI	CATG	2 cut(s)	57, 325
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	372, 381, 440, 450, 501
FokI	GGATG	2 cut(s)	145, 527
FriOI	GRGCYC	2 cut(s)	357, 391
Fsp4HI	GCNGC	5 cut(s)	372, 381, 440, 450, 501
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	5 cut(s)	372, 381, 440, 450, 501
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	491, 587
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	167, 398, 667
HapII	CCGG	3 cut(s)	86, 559, 662
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	61, 329
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	65, 421, 519
HpaII	CCGG	3 cut(s)	86, 559, 662
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	64, 672
Hpy188III	TCNNGA	5 cut(s)	180, 271, 425, 523, 688
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	123, 520
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	33, 402, 432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	377, 380, 386, 395, 601, 610
HpyF3I	CTNAG	2 cut(s)	356, 573
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	61, 329
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
LmnI	GCTCC	4 cut(s)	58, 123, 158, 334
Lsp1109I	GCAGC	3 cut(s)	367, 426, 487
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	114
MalI	GATC	8 cut(s)	80, 174, 178, 184, 278, 552, 677, 686
MboI	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
MboII	GAAGA	2 cut(s)	502, 595
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	3 cut(s)	357, 391, 615
MluCI	AATT	4 cut(s)	139, 148, 493, 539
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	528
MnlI	CCTC	9 cut(s)	114, 303, 307, 310, 472, 540, 562, 666, 678
MseI	TTAA	2 cut(s)	93, 579
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	469
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	3 cut(s)	86, 559, 662
MspR9I	CCNGG	5 cut(s)	86, 87, 164, 560, 663
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	6 cut(s)	377, 380, 386, 395, 601, 610
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	4 cut(s)	86, 87, 560, 663
NdeII	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
NlaIII	CATG	2 cut(s)	61, 329
NlaIV	GGNNCC	3 cut(s)	226, 591, 666
NmeAIII	GCCGAG	2 cut(s)	478, 570
PceI	AGGCCT	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	65, 421
PkrI	GCNGC	5 cut(s)	373, 382, 441, 451, 502
Ple19I	CGATCG	3 cut(s)	175, 185, 279
PleI	GAGTC	1 cut(s)	527
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	226, 591, 666
PspPI	GGNCC	1 cut(s)	665
PvuI	CGATCG	3 cut(s)	175, 185, 279
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	93, 579
SatI	GCNGC	5 cut(s)	372, 381, 440, 450, 501
Sau3AI	GATC	8 cut(s)	78, 172, 176, 182, 276, 550, 675, 684
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	5 cut(s)	86, 87, 164, 560, 663
SduI	GDGCHC	3 cut(s)	357, 391, 615
SetI	ASST	8 cut(s)	20, 77, 117, 321, 471, 511, 579, 632
SfaNI	GCATC	1 cut(s)	123
SfoI	GGCGCC	1 cut(s)	226
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	4 cut(s)	139, 148, 493, 539
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	4 cut(s)	231, 372, 450, 593
SspDI	GGCGCC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	5 cut(s)	84, 85, 162, 558, 661
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	6 cut(s)	68, 81, 175, 181, 279, 622
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	139, 148, 493, 539
TauI	GCSGC	2 cut(s)	374, 452
TfiI	GAWTC	2 cut(s)	65, 421
Tru1I	TTAA	2 cut(s)	93, 579
Tru9I	TTAA	2 cut(s)	93, 579
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	3 cut(s)	380, 439, 500
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	4 cut(s)	28, 237, 256, 491
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	615
Vha464I	CTTAAG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.