Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Forward (+)

24954700 .. 24955731

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G266300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTATATTTCCATAGCTCAATATCGGTCTGCAACTCCGTTGACCAACCTACTCCCATGGCGGATTCTATGAGTTTAACCGACCCAGGTGCCAAATCGAAGCAAACCAATCATGTACACAGGGGCAGAAAGATACCCAATTCTCCAAATTGCTCAAAGATACCGGCTTGCCATCGATCTCGATCGGCTGCAATTGATGTTGTGTTGTTTATTGCTGTGGTTGGTGCTTTCGGTTATTTGCTATTCCCATATGTGAAGATTATATCTGTTAAGACCATTGAAATCGTTGGAATTATTATGTATGTACTAAGGGAGGAGGTTTCTCATGCTCCTTTGGTTTATGGATGTATGGGACTTAGCATTTGTTGCGCAGCATTGGCTGCTTGGGCTCTGTTGGCCTGTACCAGTAGGAAATGTGGCAATCCCAATTGCAAGGGCCTTCGAAAGGCCGCTGAATTCGATATTCAGTTGGAGACAGAGGAGTGCGTGAAGAATTCAGCTTCAGTGGTTAAAGATGGAGTTAAGAAGGGCCTATTCGAATTGCCTCGCGATCACCACCGCGAATTGGAAGCCGAACTTAAGAAGATGGCCCCTCCTAATGGCAGAGCAGTGCTCGTCTTTCGGGCAAGGTGTGGGTGTTCTGTTGGTAGATTGGAAGTTCCGGGACCGAAGAAGCTTAAAAAGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.21

Weight (kDa)

9.41

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	2 cut(s)	549, 561
AciI	CCGC	3 cut(s)	62, 450, 559
AcsI	RAATTY	2 cut(s)	455, 493
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	3 cut(s)	117, 306, 403
AfiI	CCNNNNNNNGG	3 cut(s)	445, 565, 599
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	18, 500, 676
AluI	AGCT	3 cut(s)	18, 500, 676
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	5 cut(s)	396, 436, 447, 529, 588
ApeKI	GCWGC	3 cut(s)	188, 371, 380
ApoI	RAATTY	2 cut(s)	455, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	4 cut(s)	436, 529, 589, 665
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	545
AsuII	TTCGAA	2 cut(s)	442, 537
AvaII	GGWCC	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	175, 367, 383
BccI	CCATC	3 cut(s)	180, 509, 580
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	467
BfrI	CTTAAG	1 cut(s)	578
BisI	GCNGC	4 cut(s)	189, 372, 381, 450
BlsI	GCNGC	4 cut(s)	190, 373, 382, 451
Bme1390I	CCNGG	2 cut(s)	87, 663
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	436, 529, 589, 665
BmiI	GGNNCC	3 cut(s)	91, 591, 666
BmrFI	CCNGG	2 cut(s)	87, 663
BplI	GAGNNNNNCTC	2 cut(s)	597, 629
Bpu14I	TTCGAA	2 cut(s)	442, 537
BpuMI	CCSGG	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	57, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 565, 599
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	57, 85
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	445, 565, 599
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	329, 494
BseXI	GCAGC	3 cut(s)	175, 367, 383
Bsh1236I	CGCG	2 cut(s)	549, 561
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	5 cut(s)	398, 438, 449, 531, 590
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	164, 662
BslFI	GGGAC	2 cut(s)	366, 678
BslI	CCNNNNNNNGG	3 cut(s)	445, 565, 599
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	366, 678
BsnI	GGCC	5 cut(s)	398, 438, 449, 531, 590
Bsp119I	TTCGAA	2 cut(s)	442, 537
Bsp1286I	GDGCHC	2 cut(s)	391, 615
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	176, 182, 550, 684
Bsp19I	CCATGG	1 cut(s)	57
Bsp68I	TCGCGA	1 cut(s)	549
BspACI	CCGC	3 cut(s)	62, 450, 559
BspANI	GGCC	5 cut(s)	398, 438, 449, 531, 590
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	549, 561
BspLI	GGNNCC	3 cut(s)	91, 591, 666
BspT104I	TTCGAA	2 cut(s)	442, 537
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	57, 85
BssMI	GATC	4 cut(s)	176, 182, 550, 684
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	578
BstAPI	GCANNNNNTGC	2 cut(s)	366, 380
BstAUI	TGTACA	1 cut(s)	115
BstBI	TTCGAA	2 cut(s)	442, 537
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	308, 356
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	549, 561
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	179, 185, 553, 687
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	176, 182, 550, 684
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	5 cut(s)	366, 377, 380, 386, 395
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	85, 661
BstUI	CGCG	2 cut(s)	549, 561
BstV1I	GCAGC	3 cut(s)	175, 367, 383
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	5 cut(s)	398, 438, 449, 531, 590
BsuTUI	ATCGAT	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	510, 615
BtuMI	TCGCGA	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	4 cut(s)	436, 529, 589, 665
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	116, 305, 402
CviAII	CATG	3 cut(s)	58, 113, 326
CviQI	GTAC	3 cut(s)	116, 305, 402
DdeI	CTNAG	2 cut(s)	308, 356
DpnI	GATC	4 cut(s)	178, 184, 552, 686
DpnII	GATC	4 cut(s)	176, 182, 550, 684
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	2 cut(s)	436, 529
EcoRI	GAATTC	2 cut(s)	455, 493
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	61, 116, 329
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	2 cut(s)	366, 678
FatI	CATG	3 cut(s)	57, 112, 325
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	189, 372, 381, 450
FokI	GGATG	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	189, 372, 381, 450
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	4 cut(s)	189, 372, 381, 450
HaeIII	GGCC	5 cut(s)	398, 438, 449, 531, 590
HapII	CCGG	2 cut(s)	164, 662
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	61, 116, 329
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	2 cut(s)	164, 662
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	43, 118
Hpy188III	TCNNGA	3 cut(s)	180, 548, 688
Hpy8I	GTNNAC	2 cut(s)	43, 118
HpyAV	CCTTC	2 cut(s)	449, 520
HpyCH4V	TGCA	3 cut(s)	33, 191, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	366, 377, 380, 386, 395
HpyF3I	CTNAG	2 cut(s)	308, 356
Hsp92II	CATG	3 cut(s)	61, 116, 329
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	176, 182, 550, 684
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	7 cut(s)	72, 99, 106, 177, 412, 418, 675
Lsp1109I	GCAGC	3 cut(s)	175, 367, 383
MalI	GATC	4 cut(s)	178, 184, 552, 686
MboI	GATC	4 cut(s)	176, 182, 550, 684
MboII	GAAGA	4 cut(s)	268, 502, 595, 682
MfeI	CAATTG	2 cut(s)	192, 427
MhlI	GDGCHC	2 cut(s)	391, 615
MluCI	AATT	9 cut(s)	139, 148, 192, 291, 427, 455, 493, 539, 563
MmeI	TCCRAC	2 cut(s)	268, 450
MnlI	CCTC	5 cut(s)	307, 310, 472, 555, 603
MseI	TTAA	6 cut(s)	77, 270, 510, 522, 579, 678
MspA1I	CMGCKG	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	2 cut(s)	164, 662
MspR9I	CCNGG	2 cut(s)	87, 663
MunI	CAATTG	2 cut(s)	192, 427
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	549, 561
MwoI	GCNNNNNNNGC	5 cut(s)	366, 377, 380, 386, 395
NciI	CCSGG	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	176, 182, 550, 684
NlaIII	CATG	3 cut(s)	61, 116, 329
NlaIV	GGNNCC	3 cut(s)	91, 591, 666
NruI	TCGCGA	1 cut(s)	549
NsbI	TGCGCA	1 cut(s)	370
NspV	TTCGAA	2 cut(s)	442, 537
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	4 cut(s)	190, 373, 382, 451
Ple19I	CGATCG	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	91, 591, 666
PspPI	GGNCC	4 cut(s)	436, 529, 589, 665
PvuI	CGATCG	1 cut(s)	185
RruI	TCGCGA	1 cut(s)	549
RsaI	GTAC	3 cut(s)	117, 306, 403
RsaNI	GTAC	3 cut(s)	116, 305, 402
SaqAI	TTAA	6 cut(s)	77, 270, 510, 522, 579, 678
SatI	GCNGC	4 cut(s)	189, 372, 381, 450
Sau3AI	GATC	4 cut(s)	176, 182, 550, 684
Sau96I	GGNCC	4 cut(s)	436, 529, 589, 665
ScrFI	CCNGG	2 cut(s)	87, 663
SduI	GDGCHC	2 cut(s)	391, 615
SetI	ASST	7 cut(s)	20, 52, 91, 321, 502, 632, 678
SfuI	TTCGAA	2 cut(s)	442, 537
SinI	GGWCC	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	9 cut(s)	139, 148, 192, 291, 427, 455, 493, 539, 563
SsiI	CCGC	3 cut(s)	62, 450, 559
StyD4I	CCNGG	2 cut(s)	85, 661
StyI	CCWWGG	1 cut(s)	57
TaqI	TCGA	6 cut(s)	98, 175, 181, 442, 459, 537
TaqII	GACCGA	2 cut(s)	16, 682
TasI	AATT	9 cut(s)	139, 148, 192, 291, 427, 455, 493, 539, 563
TatI	WGTACW	2 cut(s)	115, 304
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	6 cut(s)	77, 270, 510, 522, 579, 678
Tru9I	TTAA	6 cut(s)	77, 270, 510, 522, 579, 678
TscAI	CASTG	2 cut(s)	510, 615
TseI	GCWGC	3 cut(s)	188, 371, 380
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	510, 615
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	455, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.