Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

28245770 .. 28246468

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1131300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTATATTTCCATAGCTCAATCTCGGTCTGCAACTCCGTTGACCAACCAAACGCTCCCATGGCGGATTCAATGAGTTTAACCGACCCAAGTGCCAAATCTAAGCAAACCAACCATGTTCAAGGAAGAAGAAAGATACCCAATTCCCCCAATTGCTCAAAGACTCCTTCTTGCGATCGATCTCGATCGGCTTTGATCGATGTCGTGTTATTCATTGCGGTGGTTTGCGCTTTTGGATATTTGCTACTGCCGTATGTGAAGTTTGTATCTGTTAAGACAATTGAAATTGTGCGAATAATCATGTATGTGCTGAGGGAGGAGGTTTCGAATGCTCCGTTGGTGTACGGATGCATGGGACTTAGCCTCTGCTGTGCGGCATTGGCCGCTTGGGCTCTGCTGGCCTGCACCAGCAGGAAATGTGGGAATCCCAATTGCAAGGGCCTCCGAAAGGCTGCTGAATTCGACATTCAGCTGGAGACGGAGGACTGTGTGAAGAATTCGGCTTCGGTGGCTAAGGACGGAGTGAAGAAGGGCCTTTTTGAATTGCCCCGCGATCACCACCGCGAATTGGAGGCCGAGCTTAAGAAGATGGCGCCACCTAATGGGAGAGCAGTGCTTTTGTTTCGGGCTAGGTGCGGGTGTTCTGTTGGTAGATTGGAAGTTCCGGGACCGAAGAAGCTTAAAAAGATCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.42

Weight (kDa)

9.37

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccII	CGCG	2 cut(s)	552, 564
AciI	CCGC	7 cut(s)	65, 218, 374, 384, 550, 562, 636
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	458, 496
AcyI	GRCGYC	1 cut(s)	593
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	448, 568, 602
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	72, 122, 284, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	4 cut(s)	18, 472, 580, 679
AluI	AGCT	4 cut(s)	18, 472, 580, 679
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	5 cut(s)	381, 399, 439, 532, 573
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	458, 496
AspLEI	GCGC	2 cut(s)	230, 595
AspS9I	GGNCC	3 cut(s)	439, 532, 668
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	596
BfrI	CTTAAG	1 cut(s)	581
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	3 cut(s)	375, 384, 453
BlsI	GCNGC	3 cut(s)	376, 385, 454
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	439, 532, 668
BmiI	GGNNCC	2 cut(s)	594, 669
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	2 cut(s)	311, 513
Bpu14I	TTCGAA	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	666
Bsa29I	ATCGAT	2 cut(s)	178, 198
BsaBI	GATNNNNATC	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 568, 602
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	184
BseCI	ATCGAT	2 cut(s)	178, 198
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	3 cut(s)	448, 568, 602
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	552, 564
Bsh1285I	CGRYCG	2 cut(s)	178, 188
BshFI	GGCC	5 cut(s)	383, 401, 441, 534, 575
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	2 cut(s)	178, 198
BsiEI	CGRYCG	2 cut(s)	178, 188
BsiSI	CCGG	1 cut(s)	665
BslFI	GGGAC	2 cut(s)	369, 681
BslI	CCNNNNNNNGG	3 cut(s)	448, 568, 602
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	2 cut(s)	369, 681
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	5 cut(s)	383, 401, 441, 534, 575
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	7 cut(s)	65, 218, 374, 384, 550, 562, 636
BspANI	GGCC	5 cut(s)	383, 401, 441, 534, 575
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	2 cut(s)	178, 198
BspFNI	CGCG	2 cut(s)	552, 564
BspLI	GGNNCC	2 cut(s)	594, 669
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	593
BstAFI	CTTAAG	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	399, 403
BstDEI	CTNAG	4 cut(s)	102, 311, 359, 513
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	2 cut(s)	552, 564
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	230, 595
BstKTI	GATC	6 cut(s)	178, 182, 188, 198, 556, 690
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
BstMCI	CGRYCG	2 cut(s)	178, 188
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 380, 383, 389, 398, 509
BstSCI	CCNGG	1 cut(s)	664
BstUI	CGCG	2 cut(s)	552, 564
BstV1I	GCAGC	1 cut(s)	439
Bsu15I	ATCGAT	2 cut(s)	178, 198
BsuRI	GGCC	5 cut(s)	383, 401, 441, 534, 575
BsuTUI	ATCGAT	2 cut(s)	178, 198
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	399, 403
CfoI	GCGC	2 cut(s)	230, 595
Cfr13I	GGNCC	3 cut(s)	439, 532, 668
ClaI	ATCGAT	2 cut(s)	178, 198
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	61, 116, 301, 352
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	4 cut(s)	102, 311, 359, 513
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	6 cut(s)	177, 181, 187, 197, 555, 689
DpnII	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
EaeI	YGGCCR	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	439, 532
EcoRI	GAATTC	2 cut(s)	458, 496
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	4 cut(s)	64, 119, 304, 355
FaiI	YATR	8 cut(s)	7, 15, 62, 117, 255, 302, 306, 353
FaqI	GGGAC	2 cut(s)	369, 681
FatI	CATG	4 cut(s)	60, 115, 300, 351
FauI	CCCGC	2 cut(s)	557, 629
Fnu4HI	GCNGC	3 cut(s)	375, 384, 453
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	375, 384, 453
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	2 cut(s)	229, 594
GluI	GCNGC	3 cut(s)	375, 384, 453
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	5 cut(s)	383, 401, 441, 534, 575
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	2 cut(s)	230, 595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	4 cut(s)	64, 119, 304, 355
Hin6I	GCGC	2 cut(s)	228, 593
HinP1I	GCGC	2 cut(s)	228, 593
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	68, 163, 424
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	43, 343
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	2 cut(s)	183, 691
Hpy8I	GTNNAC	2 cut(s)	43, 343
HpyAV	CCTTC	2 cut(s)	177, 523
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	33, 351, 405, 435
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 380, 383, 389, 398, 509
HpyF3I	CTNAG	4 cut(s)	102, 311, 359, 513
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	4 cut(s)	64, 119, 304, 355
HspAI	GCGC	2 cut(s)	228, 593
KasI	GGCGCC	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
LmnI	GCTCC	2 cut(s)	61, 337
LpnPI	CCDG	6 cut(s)	383, 397, 415, 421, 458, 678
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	1 cut(s)	630
MalI	GATC	6 cut(s)	177, 181, 187, 197, 555, 689
MboI	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
MboII	GAAGA	6 cut(s)	138, 141, 505, 538, 598, 685
MfeI	CAATTG	3 cut(s)	151, 279, 430
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	9 cut(s)	142, 151, 279, 285, 430, 458, 496, 542, 566
Mly113I	GGCGCC	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	7 cut(s)	306, 310, 313, 374, 452, 475, 565
Mph1103I	ATGCAT	1 cut(s)	353
MseI	TTAA	4 cut(s)	80, 273, 582, 681
MslI	CAYNNNNRTG	2 cut(s)	218, 305
MspA1I	CMGCKG	1 cut(s)	472
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	3 cut(s)	151, 279, 430
Mva1269I	GAATGC	1 cut(s)	334
MvnI	CGCG	2 cut(s)	552, 564
MwoI	GCNNNNNNNGC	6 cut(s)	62, 380, 383, 389, 398, 509
NarI	GGCGCC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
NlaIII	CATG	4 cut(s)	64, 119, 304, 355
NlaIV	GGNNCC	2 cut(s)	594, 669
NmeAIII	GCCGAG	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	68, 424
PflMI	CCANNNNNTGG	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	376, 385, 454
Ple19I	CGATCG	2 cut(s)	178, 188
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	594, 669
PspPI	GGNCC	3 cut(s)	439, 532, 668
PvuI	CGATCG	2 cut(s)	178, 188
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	218, 305
SaqAI	TTAA	4 cut(s)	80, 273, 582, 681
SatI	GCNGC	3 cut(s)	375, 384, 453
Sau3AI	GATC	6 cut(s)	175, 179, 185, 195, 553, 687
Sau96I	GGNCC	3 cut(s)	439, 532, 668
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	20, 324, 474, 582, 601, 635, 681
SfaNI	GCATC	1 cut(s)	338
SfoI	GGCGCC	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	218, 305
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	9 cut(s)	142, 151, 279, 285, 430, 458, 496, 542, 566
SsiI	CCGC	7 cut(s)	65, 218, 374, 384, 550, 562, 636
SspDI	GGCGCC	1 cut(s)	592
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	5 cut(s)	178, 184, 198, 326, 462
TaqII	GACCGA	2 cut(s)	16, 685
TasI	AATT	9 cut(s)	142, 151, 279, 285, 430, 458, 496, 542, 566
TauI	GCSGC	2 cut(s)	377, 386
TfiI	GAWTC	2 cut(s)	68, 424
Tru1I	TTAA	4 cut(s)	80, 273, 582, 681
Tru9I	TTAA	4 cut(s)	80, 273, 582, 681
TscAI	CASTG	1 cut(s)	618
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	5 cut(s)	28, 324, 360, 494, 534
TspRI	CASTG	1 cut(s)	618
Van91I	CCANNNNNTGG	1 cut(s)	602
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	2 cut(s)	458, 496
XspI	CTAG	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.