Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007784

Physical Location & Seq

Genomic Coordinates Reverse (-)

5935407 .. 5937364

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCTGATTCCATGAGCTTAATCGATCCGGGTGTTAAATCTAAACAAACCAATCATGTACAGAGGAGCAGAAGGATGCCCAATTCTGCTAATTGCTCCAAAACCCCGGTGTGCGATCGATCTCGATCGGCTGTGATTGATGTAGTCTTGTTCATTGCTGTGATTGGCGCTTGTGGGTTTTTGATGTTTCCCTATGCGAAAATCATCTCCGTCAAGACGATCGAAATCGCTGGGATTGTTATGTATGTGATGAGGGAGGAGGTTTCTCATGCTCCTTTGGTGTATGGGTCAATGGGGCTCAGCATTTTGTGTGCCGCATTGGCTGCTTGGGCTCTGTTGGCCTGCACCAGTAGGAAATGTGGGAATCCCGATTGCAAAGGGCTGCGAAAAGCCGCCGAGTTTGACATTCAGCTGGAGACAGAGGAGTGTGTGAAGAATTCGGCTGCGTTAGGTAAGGATGGAGTCAAAAAGGGCTGTTTGAATTGCCGAGGGATCACCACCGGGAATTGGAGGCTGAGCTTAAGAAGATGGCACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.55

Weight (kDa)

9.38

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01170 AT3G01170 AT5G15260 AT5G15260
fragaria_vesca	FvH4_6g48280
malus_domestica	MD00G1124900.v1.1 MD00G1131300.v1.1 MD09G1052400.v1.1
prunus_persica	Prupe.3G266300_v2.0.a1 Prupe.3G266300_v2.0.a1
pyrus_communis	pycom111g04380 pycom17g04790
rosa_chinensis	RchiOBHm_Chr2g0167781
rosa_laevigata	RLG00000021753
rosa_multiflora	Rmu_co8234087.1_g000001 Rmu_sc0003354.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083260 Rroxscaffold_7G00207580
rosa_rugosa	Rorug02G0532100
rosa_samantha	Rh2AG601000 Rh2BG611700 Rh2CG582000 Rh2DG624100
rosa_wichuraiana	Rw2G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	531
AciI	CCGC	3 cut(s)	315, 393, 535
AclWI	GGATC	2 cut(s)	20, 500
AcsI	RAATTY	1 cut(s)	436
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	507
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	481
AluBI	AGCT	3 cut(s)	18, 412, 519
AluI	AGCT	3 cut(s)	18, 412, 519
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	20, 500
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	323, 382, 443
ApoI	RAATTY	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	3 cut(s)	30, 107, 502
AsuHPI	GGTGA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	300, 334
BbvI	GCAGC	3 cut(s)	310, 369, 430
BccI	CCATC	2 cut(s)	452, 522
BcnI	CCSGG	3 cut(s)	30, 107, 502
BcoDI	GTCTC	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	5 cut(s)	315, 324, 383, 393, 444
BlpI	GCTNAGC	2 cut(s)	299, 515
BlsI	GCNGC	5 cut(s)	316, 325, 384, 394, 445
Bme1390I	CCNGG	3 cut(s)	30, 107, 502
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	3 cut(s)	30, 107, 502
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	434
Bpu1102I	GCTNAGC	2 cut(s)	299, 515
BpuMI	CCSGG	3 cut(s)	30, 107, 502
Bsa29I	ATCGAT	2 cut(s)	24, 118
BsaBI	GATNNNNATC	2 cut(s)	124, 224
BsaJI	CCNNGG	2 cut(s)	105, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	2 cut(s)	124, 224
BseCI	ATCGAT	2 cut(s)	24, 118
BseDI	CCNNGG	2 cut(s)	105, 487
BseGI	GGATG	2 cut(s)	81, 463
BseJI	GATNNNNATC	2 cut(s)	124, 224
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	313, 506
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	79, 272, 437
BseXI	GCAGC	3 cut(s)	310, 369, 430
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	328
Bsh1285I	CGRYCG	3 cut(s)	118, 128, 222
BshFI	GGCC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	531
BshVI	ATCGAT	2 cut(s)	24, 118
BsiEI	CGRYCG	3 cut(s)	118, 128, 222
BsiSI	CCGG	3 cut(s)	29, 107, 501
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	300, 334
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
Bsp1720I	GCTNAGC	2 cut(s)	299, 515
BspACI	CCGC	3 cut(s)	315, 393, 535
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	2 cut(s)	312, 507
BspDI	ATCGAT	2 cut(s)	24, 118
BspLI	GGNNCC	1 cut(s)	533
BspPI	GGATC	2 cut(s)	20, 500
BspT107I	GGYRCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	105, 487
BssMI	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	299, 515
BstF5I	GGATG	2 cut(s)	81, 463
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	6 cut(s)	28, 118, 122, 128, 222, 495
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
BstMCI	CGRYCG	3 cut(s)	118, 128, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 323, 329, 338
BstSCI	CCNGG	3 cut(s)	28, 105, 500
BstV1I	GCAGC	3 cut(s)	310, 369, 430
Bsu15I	ATCGAT	2 cut(s)	24, 118
BsuRI	GGCC	1 cut(s)	341
BsuTUI	ATCGAT	2 cut(s)	24, 118
BtsCI	GGATG	2 cut(s)	81, 463
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	170
ClaI	ATCGAT	2 cut(s)	24, 118
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	13, 56, 269
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	299, 515
DpnI	GATC	6 cut(s)	27, 117, 121, 127, 221, 494
DpnII	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
Eco24I	GRGCYC	2 cut(s)	300, 334
EcoRI	GAATTC	1 cut(s)	436
EcoT38I	GRGCYC	2 cut(s)	300, 334
FaeI	CATG	3 cut(s)	16, 59, 272
FaiI	YATR	7 cut(s)	14, 57, 195, 242, 246, 270, 285
FatI	CATG	3 cut(s)	12, 55, 268
Fnu4HI	GCNGC	5 cut(s)	315, 324, 383, 393, 444
FokI	GGATG	2 cut(s)	88, 470
FriOI	GRGCYC	2 cut(s)	300, 334
Fsp4HI	GCNGC	5 cut(s)	315, 324, 383, 393, 444
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	315, 324, 383, 393, 444
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	3 cut(s)	29, 107, 501
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	16, 59, 272
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	8, 364, 462
HpaII	CCGG	3 cut(s)	29, 107, 501
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	3 cut(s)	123, 214, 368
HpyAV	CCTTC	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	345, 375
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 323, 329, 338
HpyF3I	CTNAG	2 cut(s)	299, 515
Hsp92II	CATG	3 cut(s)	16, 59, 272
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
LmnI	GCTCC	3 cut(s)	66, 101, 277
LpnPI	CCDG	7 cut(s)	42, 120, 216, 355, 361, 398, 514
Lsp1109I	GCAGC	3 cut(s)	310, 369, 430
LweI	GCATC	1 cut(s)	66
MalI	GATC	6 cut(s)	27, 117, 121, 127, 221, 494
MboI	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
MboII	GAAGA	2 cut(s)	445, 537
MhlI	GDGCHC	2 cut(s)	300, 334
MluCI	AATT	5 cut(s)	82, 91, 436, 481, 505
MlyI	GAGTC	1 cut(s)	471
MnlI	CCTC	7 cut(s)	57, 246, 250, 253, 415, 482, 504
MseI	TTAA	3 cut(s)	20, 36, 521
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	412, 537
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	3 cut(s)	29, 107, 501
MspR9I	CCNGG	3 cut(s)	30, 107, 502
MwoI	GCNNNNNNNGC	4 cut(s)	320, 323, 329, 338
NciI	CCSGG	3 cut(s)	30, 107, 502
NdeII	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
NlaIII	CATG	3 cut(s)	16, 59, 272
NlaIV	GGNNCC	1 cut(s)	533
NmeAIII	GCCGAG	2 cut(s)	421, 512
PfeI	GAWTC	2 cut(s)	8, 364
PkrI	GCNGC	5 cut(s)	316, 325, 384, 394, 445
Ple19I	CGATCG	3 cut(s)	118, 128, 222
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	533
PvuI	CGATCG	3 cut(s)	118, 128, 222
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	20, 36, 521
SatI	GCNGC	5 cut(s)	315, 324, 383, 393, 444
Sau3AI	GATC	6 cut(s)	25, 115, 119, 125, 219, 492
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	3 cut(s)	30, 107, 502
SduI	GDGCHC	2 cut(s)	300, 334
SetI	ASST	5 cut(s)	20, 264, 414, 454, 521
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	82, 91, 436, 481, 505
SsiI	CCGC	3 cut(s)	315, 393, 535
StyD4I	CCNGG	3 cut(s)	28, 105, 500
TaqI	TCGA	4 cut(s)	24, 118, 124, 222
TasI	AATT	5 cut(s)	82, 91, 436, 481, 505
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	2 cut(s)	317, 395
TfiI	GAWTC	2 cut(s)	8, 364
Tru1I	TTAA	3 cut(s)	20, 36, 521
Tru9I	TTAA	3 cut(s)	20, 36, 521
TseI	GCWGC	3 cut(s)	323, 382, 443
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.