Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

327455 .. 329387

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAAATCCGGCGAAGAGAGTGTTGATGACATCCAACGGCGACGAGGTGTCCCGAAACATCGCTTTCCATCTAGCCAAACACGGTTGCAAGTTGGTAATGATGGGAAATGAGGGTTCCCTAAGGAGCATTGTAGACAAGATTAGAGATTCCATTGAGGGAGCCTTCCCTGCCGATGTTATAGCACTCGACATGGAATCTGACTCTGAAGTTGCTTTTCATGCCGCTGTCCAAAAGGCATGGGAACTTTCCGGCCATTTCGATGCTTTTCTCAACTCTTATACCTACCAAGGAAAGGTGCAGGACATTCTTCAAGTCTCTCAAGATGAGTTCCACAGAATCACAAAGATCAATCTCACCGCTCCATGGTTTCTCTTGAAGGCTGTAGCCACAAGGATGAAGGACCATGGATCAGGAGGCTCCATTGTCTTCATGGCCACTATCGCCAGCGGAGAGAGGGCGCTTTACCCTGGCGCTGATGCCTACGCTTCAACTTCTGCCGCTATTCACCAGCTCGTCCGGGCATCAGCCATGAGTCTCGGGAAGCACAAGATACGGGTCAACATGATCTCTAGAGGGCTGCATCTGGATGATGAGTATACAGCTTCTGTGGGAAGAGACCGAGCGCAGAAGCTGGTCAAGGACGCTGCACCCCTCGGCCAGTGGCTCAACCCGGACACAGACCTCTACTCCACTGTTATCTACTTGATCAGCGATGGCTCACGCTTCATGACAGGCACCACTGTCTTGGTGGATGGAGCGCAGTCCCTTACGCGACCCCGTCTCAAATCCTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

266

Amino Acids

29.2

Weight (kDa)

7.14

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	12 - 170	2.8e-19	short chain dehydrogenase
adh_short_C2	PF13561	16 - 229	4.5e-34	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	362
AccI	GTMKAC	2 cut(s)	135, 599
AccII	CGCG	1 cut(s)	775
AciI	CCGC	4 cut(s)	225, 360, 450, 501
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	3 cut(s)	253, 435, 658
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	295, 366
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	3 cut(s)	314, 379, 492
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	3 cut(s)	514, 605, 634
AluI	AGCT	3 cut(s)	514, 605, 634
Alw26I	GTCTC	4 cut(s)	322, 542, 612, 788
AlwI	GGATC	1 cut(s)	418
AlwNI	CAGNNNCTG	2 cut(s)	608, 634
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	253, 435, 658
ApeKI	GCWGC	2 cut(s)	580, 647
AspLEI	GCGC	4 cut(s)	463, 476, 628, 763
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	2 cut(s)	521, 674
AsuHPI	GGTGA	2 cut(s)	349, 500
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	403
AxyI	CCTNAGG	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	567, 634
BccI	CCATC	4 cut(s)	78, 97, 710, 749
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	708
BcnI	CCSGG	2 cut(s)	521, 674
BcoDI	GTCTC	4 cut(s)	322, 542, 612, 788
BfaI	CTAG	2 cut(s)	74, 573
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	2 cut(s)	464, 477
BisI	GCNGC	4 cut(s)	225, 501, 581, 648
BlsI	GCNGC	4 cut(s)	226, 502, 582, 649
Bme1390I	CCNGG	3 cut(s)	471, 521, 674
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	4 cut(s)	118, 163, 421, 739
BmrFI	CCNGG	3 cut(s)	471, 521, 674
BmsI	GCATC	4 cut(s)	253, 469, 533, 592
BpiI	GAAGAC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	521, 674
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	5 cut(s)	289, 365, 406, 469, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 366
Bse1I	ACTGG	1 cut(s)	661
Bse21I	CCTNAGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	5 cut(s)	289, 365, 406, 469, 655
BseGI	GGATG	4 cut(s)	32, 402, 595, 760
BseLI	CCNNNNNNNGG	2 cut(s)	295, 366
BseNI	ACTGG	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	567, 634
BsgI	GTGCAG	2 cut(s)	320, 633
Bsh1236I	CGCG	1 cut(s)	775
BshFI	GGCC	3 cut(s)	255, 437, 660
BshNI	GGYRCC	1 cut(s)	737
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	4 cut(s)	11, 252, 520, 674
BslFI	GGGAC	2 cut(s)	37, 751
BslI	CCNNNNNNNGG	2 cut(s)	295, 366
BsmAI	GTCTC	4 cut(s)	322, 542, 612, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	2 cut(s)	37, 751
BsnI	GGCC	3 cut(s)	255, 437, 660
Bso31I	GGTCTC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	348, 410, 567, 708
Bsp19I	CCATGG	2 cut(s)	365, 406
BspACI	CCGC	4 cut(s)	225, 360, 450, 501
BspANI	GGCC	3 cut(s)	255, 437, 660
BspFNI	CGCG	1 cut(s)	775
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	4 cut(s)	118, 163, 421, 739
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	612
BsrBI	CCGCTC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	5 cut(s)	289, 365, 406, 469, 655
BssMI	GATC	4 cut(s)	348, 410, 567, 708
BssNAI	GTATAC	1 cut(s)	600
BssT1I	CCWWGG	3 cut(s)	289, 365, 406
Bst1107I	GTATAC	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	86, 697, 745
Bst6I	CTCTTC	2 cut(s)	11, 610
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	2 cut(s)	365, 406
BstF5I	GGATG	4 cut(s)	32, 402, 595, 760
BstFNI	CGCG	1 cut(s)	775
BstH2I	RGCGCY	2 cut(s)	464, 477
BstHHI	GCGC	4 cut(s)	463, 476, 628, 763
BstKTI	GATC	4 cut(s)	351, 413, 570, 711
BstMAI	GTCTC	4 cut(s)	322, 542, 612, 788
BstMBI	GATC	4 cut(s)	348, 410, 567, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 221, 443
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	3 cut(s)	469, 519, 672
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	775
BstV1I	GCAGC	2 cut(s)	567, 634
BstV2I	GAAGAC	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstZ17I	GTATAC	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	255, 437, 660
BtgI	CCRYGG	2 cut(s)	365, 406
BtgZI	GCGATG	2 cut(s)	46, 729
BtsCI	GGATG	4 cut(s)	32, 402, 595, 760
BtsIMutI	CAGTG	3 cut(s)	668, 693, 741
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	2 cut(s)	608, 634
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	4 cut(s)	463, 476, 628, 763
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	653
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	4 cut(s)	350, 412, 569, 710
DpnII	GATC	4 cut(s)	348, 410, 567, 708
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	3 cut(s)	253, 435, 658
Eam1104I	CTCTTC	2 cut(s)	11, 610
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	2 cut(s)	11, 610
Eco130I	CCWWGG	3 cut(s)	289, 365, 406
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	3 cut(s)	289, 365, 406
ErhI	CCWWGG	3 cut(s)	289, 365, 406
Esp3I	CGTCTC	1 cut(s)	788
FaqI	GGGAC	2 cut(s)	37, 751
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	2 cut(s)	135, 599
Fnu4HI	GCNGC	4 cut(s)	225, 501, 581, 648
FokI	GGATG	4 cut(s)	19, 409, 602, 767
Fsp4HI	GCNGC	4 cut(s)	225, 501, 581, 648
FspBI	CTAG	2 cut(s)	74, 573
GlaI	GCGC	4 cut(s)	462, 475, 627, 762
GluI	GCNGC	4 cut(s)	225, 501, 581, 648
HaeII	RGCGCY	2 cut(s)	464, 477
HaeIII	GGCC	3 cut(s)	255, 437, 660
HapII	CCGG	4 cut(s)	11, 252, 520, 674
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	4 cut(s)	463, 476, 628, 763
Hin6I	GCGC	4 cut(s)	461, 474, 626, 761
HinP1I	GCGC	4 cut(s)	461, 474, 626, 761
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	5 cut(s)	149, 197, 203, 339, 535
HpaII	CCGG	4 cut(s)	11, 252, 520, 674
HphI	GGTGA	2 cut(s)	349, 500
Hpy166II	GTNNAC	3 cut(s)	136, 562, 600
Hpy188I	TCNGA	2 cut(s)	202, 208
Hpy188III	TCNNGA	8 cut(s)	54, 323, 376, 414, 541, 573, 587, 730
Hpy8I	GTNNAC	3 cut(s)	136, 562, 600
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	175, 373, 394
HpyCH4III	ACNGT	3 cut(s)	86, 697, 745
HpyCH4V	TGCA	4 cut(s)	90, 301, 583, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 221, 443
HpyF3I	CTNAG	1 cut(s)	122
HspAI	GCGC	4 cut(s)	461, 474, 626, 761
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	348, 410, 567, 708
LmnI	GCTCC	5 cut(s)	126, 161, 367, 425, 758
Lsp1109I	GCAGC	2 cut(s)	567, 634
LweI	GCATC	4 cut(s)	253, 469, 533, 592
MaeI	CTAG	2 cut(s)	74, 573
MalI	GATC	4 cut(s)	350, 412, 569, 710
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	348, 410, 567, 708
MboII	GAAGA	4 cut(s)	28, 302, 421, 627
MlsI	TGGCCA	1 cut(s)	437
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	197, 544
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	40, 106, 151, 410, 450, 569, 665, 695
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
MslI	CAYNNNNRTG	3 cut(s)	261, 395, 588
Msp20I	TGGCCA	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	227, 450
MspI	CCGG	4 cut(s)	11, 252, 520, 674
MspR9I	CCNGG	3 cut(s)	471, 521, 674
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	775
MwoI	GCNNNNNNNGC	3 cut(s)	170, 221, 443
NciI	CCSGG	2 cut(s)	521, 674
NcoI	CCATGG	2 cut(s)	365, 406
NdeII	GATC	4 cut(s)	348, 410, 567, 708
NlaIV	GGNNCC	4 cut(s)	118, 163, 421, 739
NmeAIII	GCCGAG	1 cut(s)	636
NspI	RCATGY	1 cut(s)	799
PagI	TCATGA	1 cut(s)	729
PciI	ACATGT	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	149, 197, 339
PflFI	GACNNNGTC	1 cut(s)	780
PkrI	GCNGC	4 cut(s)	226, 502, 582, 649
PleI	GAGTC	2 cut(s)	197, 543
PpsI	GAGTC	2 cut(s)	197, 543
PscI	ACATGT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	118, 163, 421, 739
PspPI	GGNCC	1 cut(s)	403
PstNI	CAGNNNCTG	2 cut(s)	608, 634
PsyI	GACNNNGTC	1 cut(s)	780
RseI	CAYNNNNRTG	3 cut(s)	261, 395, 588
SatI	GCNGC	4 cut(s)	225, 501, 581, 648
Sau3AI	GATC	4 cut(s)	348, 410, 567, 708
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	2 cut(s)	197, 544
ScrFI	CCNGG	3 cut(s)	471, 521, 674
SetI	ASST	7 cut(s)	51, 287, 300, 516, 607, 636, 687
SfaNI	GCATC	4 cut(s)	253, 469, 533, 592
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	3 cut(s)	261, 395, 588
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SsiI	CCGC	4 cut(s)	225, 360, 450, 501
SspMI	CTAG	2 cut(s)	74, 573
StyD4I	CCNGG	3 cut(s)	469, 519, 672
StyI	CCWWGG	3 cut(s)	289, 365, 406
TaaI	ACNGT	3 cut(s)	86, 697, 745
TaqI	TCGA	2 cut(s)	189, 261
TaqII	GACCGA	1 cut(s)	636
TauI	GCSGC	2 cut(s)	227, 503
TfiI	GAWTC	3 cut(s)	149, 197, 339
TscAI	CASTG	3 cut(s)	668, 700, 748
TseI	GCWGC	2 cut(s)	580, 647
TspDTI	ATGAA	4 cut(s)	209, 413, 421, 718
TspRI	CASTG	3 cut(s)	668, 700, 748
Tth111I	GACNNNGTC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	403
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	430, 748
XmiI	GTMKAC	2 cut(s)	135, 599
XspI	CTAG	2 cut(s)	74, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.