Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

87912533 .. 87915434

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCATCGATCGACAAAAGAGACTCTTTTTTCACCAAGAAGAAGCAAACAACAACCACCGCCACCTCTTCTTTTTTTATATTTAGTTTCTTTGTGTCACAAGTACAGCTTTGGGCTTATTATATAAGAGCCTGGACACGTTCTTGGTTGTTTGATTACGCAGAAATGGGGAGTCCTGCTGCAAAGAAAGTCCTGCTCACCTGCAATGGGGATGAAATTTCATCCAACATAGCCTTACAATTGGCCCAACGCGGTTGCAGGTTGGTTTTGATGGGCAAAGAGAGCTCTTTGAGGAGTGTTGCAGAGAAAATAAGGGGATCACTGGAAGGTGTGGTGTCTGTAGAGGTGGTTGGTGTGGGCATGGAGGAGGAGAGAGAAGGAGTTTTTGATGAGGCTGTGGATAAGGCTTGTGAAATCTTGGGTAATTTGGATGCCTTTGTGCATTGCTATGCCTATGAAGGAGAGATGCAAGAGCATTTGCAATTATCTGAAGATGAGTTTAAGAAAATAATGAAGATAAATTTCATGTCTGCTTGGTTTCTGGTAAAGGCCGTTGGCAGAAGAATGCGAGATCATAAGTCAGGAGGTTCCATCATATTGTTGACCTCGATTGTTGGAGCTGAAAGAGGGCTTTATACAGGAGCTGCCGCCTATGGTGCATGTTCAGCAGCACTGCAGCAGTTAGTAAGGTCATCGGCATTGGAGATTGGAAAATACAAGATCAGGGTCAATGCAATTGCACGTGGTTTGCATGTGGAAGATGAATTTCCCATGTCTGTGGGAATAGATAGAGCAAAGAAGCTGGTGAAGGATGCAGTTCCACTGGAAAGATGGCTTGATGTTACAAATGATGTCGCTTCAACTGTCATATATTTAGTCAGTGATGGTTCAAGGTACATGACTGGCACAACTATATTTGTCGATGGGGCACAGTCTCTCATGAGGCCTCGGATGCGTTCTTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

322

Amino Acids

35.9

Weight (kDa)

8.17

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	62 - 249	8.5e-25	short chain dehydrogenase
adh_short_C2	PF13561	73 - 309	2.1e-41	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	2 cut(s)	209, 249
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	60, 252, 648
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	3 cut(s)	216, 520, 764
AcuI	CTGAAG	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	743
AfaI	GTAC	2 cut(s)	105, 896
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	861, 891
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	5 cut(s)	109, 285, 620, 644, 802
AluI	AGCT	5 cut(s)	109, 285, 620, 644, 802
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	2 cut(s)	15, 939
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	243, 549, 944
ApeKI	GCWGC	4 cut(s)	179, 644, 668, 676
ApoI	RAATTY	3 cut(s)	216, 520, 764
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	25, 190, 817
BaeGI	GKGCMC	1 cut(s)	931
BanII	GRGCYC	1 cut(s)	287
BbrPI	CACGTG	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	166, 631, 680, 688
BccI	CCATC	5 cut(s)	265, 599, 825, 878, 917
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	15, 939
BfmI	CTRYAG	2 cut(s)	339, 674
BfuAI	ACCTGC	2 cut(s)	209, 249
BisI	GCNGC	5 cut(s)	180, 645, 648, 669, 677
BlsI	GCNGC	5 cut(s)	181, 646, 649, 670, 678
Bme1390I	CCNGG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	4 cut(s)	421, 456, 802, 942
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	3 cut(s)	327, 828, 907
Bse3DI	GCAATG	2 cut(s)	211, 442
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	947
BseGI	GGATG	5 cut(s)	217, 221, 436, 817, 957
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	2 cut(s)	211, 442
BseNI	ACTGG	3 cut(s)	327, 828, 907
BseRI	GAGGAG	3 cut(s)	307, 380, 383
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	4 cut(s)	166, 631, 680, 688
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	245, 551, 946
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	15, 939
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	245, 551, 946
Bsp1286I	GDGCHC	2 cut(s)	287, 931
Bsp143I	GATC	4 cut(s)	9, 317, 571, 720
BspACI	CCGC	3 cut(s)	60, 252, 648
BspANI	GGCC	3 cut(s)	245, 551, 946
BspDI	ATCGAT	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	589
BspMAI	CTGCAG	1 cut(s)	678
BspMI	ACCTGC	2 cut(s)	209, 249
BspPI	GGATC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	211, 442
BsrI	ACTGG	3 cut(s)	327, 828, 907
BssECI	CCNNGG	1 cut(s)	947
BssMI	GATC	4 cut(s)	9, 317, 571, 720
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	865, 933
Bst6I	CTCTTC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	743
BstF5I	GGATG	5 cut(s)	217, 221, 436, 817, 957
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	4 cut(s)	12, 320, 574, 723
BstMAI	GTCTC	2 cut(s)	15, 939
BstMBI	GATC	4 cut(s)	9, 317, 571, 720
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 656, 665, 952
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	2 cut(s)	663, 755
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	2 cut(s)	339, 674
BstSLI	GKGCMC	1 cut(s)	931
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	166, 631, 680, 688
BstXI	CCANNNNNNTGG	1 cut(s)	778
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	245, 551, 946
BsuTUI	ATCGAT	1 cut(s)	8
BtsCI	GGATG	5 cut(s)	217, 221, 436, 817, 957
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	4 cut(s)	320, 671, 821, 886
BveI	ACCTGC	2 cut(s)	209, 249
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	104, 895
CviAII	CATG	7 cut(s)	361, 526, 660, 752, 772, 898, 940
CviQI	GTAC	2 cut(s)	104, 895
DpnI	GATC	4 cut(s)	11, 319, 573, 722
DpnII	GATC	4 cut(s)	9, 317, 571, 720
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	510
Eco72I	CACGTG	1 cut(s)	743
EcoICRI	GAGCTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	7 cut(s)	364, 529, 663, 755, 775, 901, 943
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 93, 125
FatI	CATG	7 cut(s)	360, 525, 659, 751, 771, 897, 939
Fnu4HI	GCNGC	5 cut(s)	180, 645, 648, 669, 677
FokI	GGATG	5 cut(s)	208, 224, 443, 824, 964
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	180, 645, 648, 669, 677
GluI	GCNGC	5 cut(s)	180, 645, 648, 669, 677
HaeIII	GGCC	3 cut(s)	245, 551, 946
Hin1II	CATG	7 cut(s)	364, 529, 663, 755, 775, 901, 943
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	2 cut(s)	23, 172
HphI	GGTGA	3 cut(s)	25, 190, 817
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	2 cut(s)	490, 951
Hpy188III	TCNNGA	2 cut(s)	582, 940
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	4 cut(s)	320, 371, 452, 802
HpyCH4III	ACNGT	2 cut(s)	865, 933
HpyCH4IV	ACGT	2 cut(s)	139, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 656, 665, 952
HpySE526I	ACGT	2 cut(s)	139, 742
Hsp92II	CATG	7 cut(s)	364, 529, 663, 755, 775, 901, 943
Kzo9I	GATC	4 cut(s)	9, 317, 571, 720
LmnI	GCTCC	2 cut(s)	617, 641
Lsp1109I	GCAGC	4 cut(s)	166, 631, 680, 688
LweI	GCATC	4 cut(s)	421, 456, 802, 942
MaeII	ACGT	2 cut(s)	139, 742
MaeIII	GTNAC	2 cut(s)	96, 841
MalI	GATC	4 cut(s)	11, 319, 573, 722
MboI	GATC	4 cut(s)	9, 317, 571, 720
MboII	GAAGA	6 cut(s)	52, 60, 503, 526, 573, 770
MfeI	CAATTG	2 cut(s)	239, 735
MhlI	GDGCHC	2 cut(s)	287, 931
MluCI	AATT	7 cut(s)	216, 239, 424, 482, 520, 735, 764
MlyI	GAGTC	2 cut(s)	17, 181
MmeI	TCCRAC	2 cut(s)	249, 595
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	447, 776
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	2 cut(s)	239, 735
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	282, 656, 665, 952
NdeII	GATC	4 cut(s)	9, 317, 571, 720
NlaIII	CATG	7 cut(s)	364, 529, 663, 755, 775, 901, 943
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	2 cut(s)	663, 755
PagI	TCATGA	1 cut(s)	939
PaqCI	CACCTGC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	946
PctI	GAATGC	1 cut(s)	570
PkrI	GCNGC	5 cut(s)	181, 646, 649, 670, 678
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	2 cut(s)	17, 180
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
PpsI	GAGTC	2 cut(s)	17, 180
Ppu21I	YACGTR	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	131
PspCI	CACGTG	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	678
PstNI	CAGNNNCTG	1 cut(s)	644
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	105, 896
RsaNI	GTAC	2 cut(s)	104, 895
RseI	CAYNNNNRTG	2 cut(s)	447, 776
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	5 cut(s)	180, 645, 648, 669, 677
Sau3AI	GATC	4 cut(s)	9, 317, 571, 720
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	17, 181
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	2 cut(s)	287, 931
SfaNI	GCATC	4 cut(s)	421, 456, 802, 942
SfcI	CTRYAG	2 cut(s)	339, 674
SmiMI	CAYNNNNRTG	2 cut(s)	447, 776
Sse9I	AATT	7 cut(s)	216, 239, 424, 482, 520, 735, 764
SseBI	AGGCCT	1 cut(s)	946
SsiI	CCGC	3 cut(s)	60, 252, 648
SstI	GAGCTC	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	865, 933
TaiI	ACGT	2 cut(s)	142, 745
TaqI	TCGA	4 cut(s)	8, 12, 608, 921
TasI	AATT	7 cut(s)	216, 239, 424, 482, 520, 735, 764
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	4 cut(s)	327, 678, 828, 886
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	4 cut(s)	179, 644, 668, 676
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	6 cut(s)	210, 228, 471, 514, 527, 777
TspRI	CASTG	4 cut(s)	327, 678, 828, 886
XapI	RAATTY	3 cut(s)	216, 520, 764
XceI	RCATGY	2 cut(s)	663, 755
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.