Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

82862992 .. 82865361

Gene Structure 2370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGGAATCCTGCTGCAAAGAAAGTCCTGCTCACCTGCAATGGGGATGAAATTTCATCCAACATAGCCTTACAATTGGCCCAACGCGGTTGCAGGTTGGTTTTGATGGGCAAAGAGAGCTCTTTGAGGAGTGTTGCAGAGAAAATAAGGGCATCACTGGAAGGTGTGGTGTCTATAGAGGTGGTTGGTGTGGACATGGAGGAGGAGAGAGAAGAAGTTTTTGATGAGGCTGTGGATAAGGCTTGTGAAATCTTGGGTAATTTGGATGCCTTTGTGCATTGCTATGCCTATGAAGGAGAGATGCAAGAGCATCTGCAATTATCTGAAGATGAGTTTAAGAAAATAATGAAGATAAATTTCATGTCTGCTTGGTTTCTGGTAAAGGCCGTTGGCAGAGGAATGCGAGATCATAAGTCAGGAGGTTCCATCATATTGTTGACCTCGATTGTTGGAGCTGAAAGAGGGCTTTATACAGGAGCTGCCGCCTATGGTGCTTGTTCAGCAGCACTGCAGCAGTTAGTAAGGTCATCAGCATTGGAGATTGGAAAATACAAGATCAGGGTCAATGCAATTGCACGTGGTTTGCATGTGGAAGATGAATTTCCCATGTCTGTGGGAATAGATAGAGCAAAGAAGCTGGTGAAGGATGCAGTTCCACTGGAAAGATGGCTTGATGTTAAAAATGATATCGCTTCAACTGTCATATATTTAGTCAGTGATGGTTCAAGGTACATGACTGGCACAACTATATTTGTCGATGGGGCACAGTCTCTCATGAGGCCTCGGATGCGTTCTTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

268

Amino Acids

29.38

Weight (kDa)

5.91

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	7 - 194	1.7e-26	short chain dehydrogenase
adh_short_C2	PF13561	18 - 254	2.6e-42	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	2 cut(s)	44, 84
AccII	CGCG	1 cut(s)	87
AciI	CCGC	2 cut(s)	87, 483
AcsI	RAATTY	3 cut(s)	51, 355, 599
AcuI	CTGAAG	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	696, 726
AluBI	AGCT	4 cut(s)	120, 455, 479, 637
AluI	AGCT	4 cut(s)	120, 455, 479, 637
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	774
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	3 cut(s)	78, 384, 779
ApeKI	GCWGC	4 cut(s)	14, 479, 503, 511
ApoI	RAATTY	3 cut(s)	51, 355, 599
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	25, 652
BaeGI	GKGCMC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	466, 515, 523
BccI	CCATC	5 cut(s)	100, 434, 660, 713, 752
BceAI	ACGGC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	774
BfmI	CTRYAG	2 cut(s)	174, 509
BfuAI	ACCTGC	2 cut(s)	44, 84
BisI	GCNGC	5 cut(s)	15, 480, 483, 504, 512
BlsI	GCNGC	5 cut(s)	16, 481, 484, 505, 513
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	6 cut(s)	161, 256, 291, 319, 637, 777
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	3 cut(s)	162, 663, 742
Bse3DI	GCAATG	2 cut(s)	46, 277
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	5 cut(s)	52, 56, 271, 652, 792
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	2 cut(s)	46, 277
BseNI	ACTGG	3 cut(s)	162, 663, 742
BseRI	GAGGAG	3 cut(s)	142, 215, 218
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	466, 515, 523
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	80, 386, 781
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	774
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	80, 386, 781
Bsp1286I	GDGCHC	2 cut(s)	122, 766
Bsp143I	GATC	2 cut(s)	406, 555
BspACI	CCGC	2 cut(s)	87, 483
BspANI	GGCC	3 cut(s)	80, 386, 781
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	2 cut(s)	44, 84
BsrDI	GCAATG	2 cut(s)	46, 277
BsrI	ACTGG	3 cut(s)	162, 663, 742
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	2 cut(s)	406, 555
Bst4CI	ACNGT	2 cut(s)	700, 768
BstBAI	YACGTR	1 cut(s)	578
BstF5I	GGATG	5 cut(s)	52, 56, 271, 652, 792
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	409, 558
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	2 cut(s)	406, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 491, 500, 787
BstNSI	RCATGY	1 cut(s)	590
BstSFI	CTRYAG	2 cut(s)	174, 509
BstSLI	GKGCMC	1 cut(s)	766
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	466, 515, 523
BstXI	CCANNNNNNTGG	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	80, 386, 781
BtsCI	GGATG	5 cut(s)	52, 56, 271, 652, 792
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	4 cut(s)	155, 506, 656, 721
BveI	ACCTGC	2 cut(s)	44, 84
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	774
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	6 cut(s)	196, 361, 587, 607, 733, 775
CviQI	GTAC	1 cut(s)	730
DpnI	GATC	2 cut(s)	408, 557
DpnII	GATC	2 cut(s)	406, 555
Ecl136II	GAGCTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	781
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	6 cut(s)	199, 364, 590, 610, 736, 778
FatI	CATG	6 cut(s)	195, 360, 586, 606, 732, 774
Fnu4HI	GCNGC	5 cut(s)	15, 480, 483, 504, 512
FokI	GGATG	5 cut(s)	43, 59, 278, 659, 799
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	15, 480, 483, 504, 512
GluI	GCNGC	5 cut(s)	15, 480, 483, 504, 512
HaeIII	GGCC	3 cut(s)	80, 386, 781
Hin1II	CATG	6 cut(s)	199, 364, 590, 610, 736, 778
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	25, 652
Hpy166II	GTNNAC	2 cut(s)	193, 438
Hpy188I	TCNGA	2 cut(s)	325, 786
Hpy188III	TCNNGA	2 cut(s)	417, 775
Hpy8I	GTNNAC	2 cut(s)	193, 438
HpyAV	CCTTC	3 cut(s)	155, 287, 637
HpyCH4III	ACNGT	2 cut(s)	700, 768
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 491, 500, 787
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	6 cut(s)	199, 364, 590, 610, 736, 778
Kzo9I	GATC	2 cut(s)	406, 555
LmnI	GCTCC	2 cut(s)	452, 476
Lsp1109I	GCAGC	3 cut(s)	466, 515, 523
LweI	GCATC	6 cut(s)	161, 256, 291, 319, 637, 777
MaeII	ACGT	1 cut(s)	577
MalI	GATC	2 cut(s)	408, 557
MboI	GATC	2 cut(s)	406, 555
MboII	GAAGA	4 cut(s)	224, 338, 361, 605
MfeI	CAATTG	2 cut(s)	74, 570
MhlI	GDGCHC	2 cut(s)	122, 766
MluCI	AATT	7 cut(s)	51, 74, 259, 317, 355, 570, 599
MmeI	TCCRAC	2 cut(s)	84, 430
MseI	TTAA	2 cut(s)	336, 678
MslI	CAYNNNNRTG	2 cut(s)	282, 611
MunI	CAATTG	2 cut(s)	74, 570
Mva1269I	GAATGC	1 cut(s)	405
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	117, 491, 500, 787
NdeII	GATC	2 cut(s)	406, 555
NlaIII	CATG	6 cut(s)	199, 364, 590, 610, 736, 778
NlaIV	GGNNCC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	590
PagI	TCATGA	1 cut(s)	774
PaqCI	CACCTGC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	781
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	5 cut(s)	16, 481, 484, 505, 513
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
Ppu21I	YACGTR	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	122
PspCI	CACGTG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	2 cut(s)	282, 611
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	336, 678
SatI	GCNGC	5 cut(s)	15, 480, 483, 504, 512
Sau3AI	GATC	2 cut(s)	406, 555
Sau96I	GGNCC	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	122, 766
SfaNI	GCATC	6 cut(s)	161, 256, 291, 319, 637, 777
SfcI	CTRYAG	2 cut(s)	174, 509
SmiMI	CAYNNNNRTG	2 cut(s)	282, 611
Sse9I	AATT	7 cut(s)	51, 74, 259, 317, 355, 570, 599
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	87, 483
SstI	GAGCTC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	781
TaaI	ACNGT	2 cut(s)	700, 768
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	443, 756
TasI	AATT	7 cut(s)	51, 74, 259, 317, 355, 570, 599
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	336, 678
Tru9I	TTAA	2 cut(s)	336, 678
TscAI	CASTG	4 cut(s)	162, 513, 663, 721
TseI	GCWGC	4 cut(s)	14, 479, 503, 511
TspDTI	ATGAA	6 cut(s)	45, 63, 306, 349, 362, 612
TspRI	CASTG	4 cut(s)	162, 513, 663, 721
XapI	RAATTY	3 cut(s)	51, 355, 599
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.