Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

39366407 .. 39369327

Gene Structure 2921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGGAGTCCTGCTGCAAGGAAGGTCCTTCTCACTTCCAATGGGGATGAAATCTCATCCAACATAGCCTTACAATTGGCCCAACGCGGTTGCAGGTTGGTTTTGATGGGAAAAGAGAGCTCTTTGAGGAGTGTTGCAGAGAAAATAAGGGGGTCACTGGAAGGTGTGGTGTCTATAGAGGTGGTTGGTGTGGATATGGAGGAGGAGAGAGGAGCAGTTTTTGATGAGGCTGTGGATAAGGCTTGTGAAATCTTGGGTAGTTTGGATGCCTTTGTGCATTGCTATGCCAATGAAGGCAAGATGCAAGAACATCTGCAATTATCTGAAGACAAGTTTAAAAAGATAATGAAGATAAATTTCATGTCTGCATGGTTTCTGGTAAATGCCGTTGGCAGAAGAATGCGAGATCATAAATCAGGAGGTTCCATCATATTGTTGACCTCGATTGTTGGAGCTGAAAGAGGGCTTTATACAGGAGCTGTTGCCTATGGTGCTTGTTCAGCAGCACTGCAGCAGTTAGTAAGGTCGTCGGCATTGGAGATTGGAAAATACCAGATCAGGGTTAATGCAATCGCACGTGGTTTGCATTTGGAAGATGAGTTTCCTAAGTCTGTGGGAATAGAGAGAGCAAAGAAGCTGGTGAAGGATGCAGTTCCGCTGGAGAGATGGCTTGATGTTAAAAATGATGTGGCTTCAAGTGTCATATATTTGGTCAGTGATGGTTCAAGGTACATGACGGGCACAACTATATTTGTTGATGGGGCACAGTCTCTCGTGAGGCCTCGAATGCGTTCTTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

268

Amino Acids

29.22

Weight (kDa)

8.6

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 195	1.1e-24	short chain dehydrogenase
adh_short_C2	PF13561	18 - 254	4.3e-40	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccII	CGCG	1 cut(s)	87
AciI	CCGC	2 cut(s)	87, 656
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	2 cut(s)	696, 726
AluBI	AGCT	4 cut(s)	120, 455, 479, 637
AluI	AGCT	4 cut(s)	120, 455, 479, 637
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	774
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	78, 779
ApeKI	GCWGC	3 cut(s)	14, 503, 511
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	790
AspS9I	GGNCC	2 cut(s)	25, 79
AsuHPI	GGTGA	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	2 cut(s)	743, 766
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	773
BbrPI	CACGTG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	515, 523
BccI	CCATC	5 cut(s)	100, 434, 660, 713, 752
BceAI	ACGGC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	774
BfmI	CTRYAG	2 cut(s)	174, 509
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	15, 504, 512
BlsI	GCNGC	3 cut(s)	16, 505, 513
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 79
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	3 cut(s)	256, 291, 637
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	277
BseGI	GGATG	4 cut(s)	52, 56, 271, 652
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMI	GCAATG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	4 cut(s)	142, 215, 218, 225
BseSI	GKGCMC	2 cut(s)	743, 766
BseXI	GCAGC	2 cut(s)	515, 523
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	80, 781
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	774
BsmI	GAATGC	2 cut(s)	405, 792
BsnI	GGCC	2 cut(s)	80, 781
Bsp1286I	GDGCHC	3 cut(s)	122, 743, 766
Bsp143I	GATC	2 cut(s)	406, 555
BspACI	CCGC	2 cut(s)	87, 656
BspANI	GGCC	2 cut(s)	80, 781
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	406, 555
BssSI	CACGAG	1 cut(s)	773
Bst2BI	CACGAG	1 cut(s)	773
Bst4CI	ACNGT	1 cut(s)	768
BstBAI	YACGTR	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	4 cut(s)	52, 56, 271, 652
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	409, 558
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	2 cut(s)	406, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 500, 787
BstSFI	CTRYAG	2 cut(s)	174, 509
BstSLI	GKGCMC	2 cut(s)	743, 766
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	515, 523
BstV2I	GAAGAC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	80, 781
BtsCI	GGATG	4 cut(s)	52, 56, 271, 652
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	3 cut(s)	155, 506, 721
BveI	ACCTGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	25, 79
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	3 cut(s)	361, 369, 733
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	2 cut(s)	408, 557
DpnII	GATC	2 cut(s)	406, 555
DraI	TTTAAA	1 cut(s)	337
Ecl136II	GAGCTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	781
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	364, 372, 736
FatI	CATG	3 cut(s)	360, 368, 732
Fnu4HI	GCNGC	3 cut(s)	15, 504, 512
FokI	GGATG	4 cut(s)	43, 59, 278, 659
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	15, 504, 512
GluI	GCNGC	3 cut(s)	15, 504, 512
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	80, 781
Hin1II	CATG	3 cut(s)	364, 372, 736
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	417, 775
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	5 cut(s)	16, 38, 155, 287, 637
HpyCH4III	ACNGT	1 cut(s)	768
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 500, 787
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	3 cut(s)	364, 372, 736
Kzo9I	GATC	2 cut(s)	406, 555
LmnI	GCTCC	3 cut(s)	212, 452, 476
Lsp1109I	GCAGC	2 cut(s)	515, 523
LweI	GCATC	3 cut(s)	256, 291, 637
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	408, 557
MboI	GATC	2 cut(s)	406, 555
MboII	GAAGA	4 cut(s)	338, 361, 408, 605
MfeI	CAATTG	1 cut(s)	74
MhlI	GDGCHC	3 cut(s)	122, 743, 766
MluCI	AATT	3 cut(s)	74, 317, 355
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	84, 430
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	3 cut(s)	336, 564, 678
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	2 cut(s)	405, 792
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	491, 500, 787
NdeII	GATC	2 cut(s)	406, 555
NlaIII	CATG	3 cut(s)	364, 372, 736
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	781
PctI	GAATGC	2 cut(s)	405, 792
PdmI	GAANNNNTTC	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	16, 505, 513
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	25
PspCI	CACGTG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	25, 79
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	336, 564, 678
SatI	GCNGC	3 cut(s)	15, 504, 512
Sau3AI	GATC	2 cut(s)	406, 555
Sau96I	GGNCC	2 cut(s)	25, 79
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	122, 743, 766
SfaNI	GCATC	3 cut(s)	256, 291, 637
SfcI	CTRYAG	2 cut(s)	174, 509
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	74, 317, 355
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	87, 656
SstI	GAGCTC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	781
TaaI	ACNGT	1 cut(s)	768
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	443, 784
TasI	AATT	3 cut(s)	74, 317, 355
Tru1I	TTAA	3 cut(s)	336, 564, 678
Tru9I	TTAA	3 cut(s)	336, 564, 678
TscAI	CASTG	3 cut(s)	162, 513, 721
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	3 cut(s)	14, 503, 511
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	63, 306, 349, 362
TspRI	CASTG	3 cut(s)	162, 513, 721
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.