Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

13232492 .. 13233045

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGGAGTCCTCCTGCGAAGAAAGTCCTGCTCACCTCCAATGGTGACGAGATTTCACAGAGCATCGCCTTCTCTCTGGCCCAACGCGGCTGCAGGTTGGTGTTGATGGGGAAGGAGAGCTGCCTAAGGGGTATTGTGCAGAAAATAACGGGCCCACTGGAAGGTGCGGTGGCGCCGGTGGAGGTGGTGGACGTGGACATGGAGGACGAGAGGGAGGGAACTTTTGATGAGGCGGTGGAGAAGGCATGCAACATCTTGGGCAATTTGGATGCATTTGTGCATTGCTATACTTACGAAGGTACAAGTTTCCTTCATGACTGCTCTATTCCAATTTCTCTCGGTCGGAGATTATTTGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

121

Amino Acids

13.06

Weight (kDa)

4.85

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	87, 167, 233
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
AoxI	GGCC	2 cut(s)	78, 151
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	90, 120
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	79, 151, 152
AsuHPI	GGTGA	2 cut(s)	25, 56
AxyI	CCTNAGG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	77, 107
BccI	CCATC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	88, 91, 121
BlsI	GCNGC	3 cut(s)	89, 92, 122
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	79, 151, 152
BmiI	GGNNCC	2 cut(s)	153, 174
BmsI	GCATC	2 cut(s)	72, 259
BsaHI	GRCGYC	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	162
Bse21I	CCTNAGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	77, 107
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	80, 153
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	2 cut(s)	80, 153
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	155
BspACI	CCGC	3 cut(s)	87, 167, 233
BspANI	GGCC	2 cut(s)	80, 153
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	153, 174
BspMAI	CTGCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	77, 107
Bsu36I	CCTNAGG	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	80, 153
BtgZI	GCGATG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	247
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	79, 151, 152
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	199, 246, 314
CviJI	RGCY	4 cut(s)	80, 90, 120, 153
CviKI_1	RGCY	4 cut(s)	80, 90, 120, 153
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	125
DinI	GGCGCC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaeI	CATG	3 cut(s)	202, 249, 317
FaiI	YATR	4 cut(s)	200, 247, 288, 315
FatI	CATG	3 cut(s)	198, 245, 313
Fnu4HI	GCNGC	3 cut(s)	88, 91, 121
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	88, 91, 121
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	88, 91, 121
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	80, 153
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	202, 249, 317
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	25, 56
Hpy166II	GTNNAC	2 cut(s)	190, 196
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	190, 196
HpyAV	CCTTC	6 cut(s)	79, 106, 155, 235, 290, 320
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	5 cut(s)	93, 139, 249, 272, 280
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	202, 249, 317
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	27, 41, 62, 79, 143, 189
Lsp1109I	GCAGC	2 cut(s)	77, 107
LweI	GCATC	2 cut(s)	72, 259
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	262, 330
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	21, 46, 175, 196, 204, 208, 223
Mph1103I	ATGCAT	1 cut(s)	274
MspI	CCGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	202, 249, 317
NlaIV	GGNNCC	2 cut(s)	153, 174
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	89, 92, 122
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	153, 174
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	3 cut(s)	79, 151, 152
PstI	CTGCAG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SatI	GCNGC	3 cut(s)	88, 91, 121
Sau96I	GGNCC	3 cut(s)	79, 151, 152
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	38, 98, 122, 166, 186, 195, 301
SfaNI	GCATC	2 cut(s)	72, 259
SfcI	CTRYAG	1 cut(s)	91
SfoI	GGCGCC	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	175
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	2 cut(s)	262, 330
SsiI	CCGC	3 cut(s)	87, 167, 233
SspDI	GGCGCC	1 cut(s)	172
TaiI	ACGT	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	262, 330
TauI	GCSGC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	90, 120
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	162
XceI	RCATGY	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.