Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

71080033 .. 71080742

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0588500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGTCGCCGGCGATTGTGCTCCTCATCCTCTTCATCCTGGTCGTCGCTGCTTCAAACCTCCTCTACTACCTCCGCCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCGCCGTGCCGCTGCAGCACTCACCGTCTCGCCTCCGGCAAGCGGAGTTCGAGCCGGAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCAGTTTGCCGCGCCGAGGTCTTCCGGTCCGACTCGGACCTCCTCCTCCAGACAGCCTCCTCCGCCGGCGGAAGCTTCCGGCTGGCGATCGGCAACGTCAGCCGCTGCCGGCGTCAGGACAATTCGAGCTCGCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGATGCGGTTCACGACGTCGAAGCTGGCGAGGACGACGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGTCTACGGTGGATGGAGCTATCCGAGGGACTGGAAACGATTTACCGATGGCTCTCCTGAAGTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

201

Amino Acids

22.25

Weight (kDa)

5.46

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	54 - 91	4.9e-08	Ring finger domain
zf-rbx1	PF12678	66 - 91	3.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AatII	GACGTC	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	3 cut(s)	273, 394, 411
AcsI	RAATTY	1 cut(s)	419
AcvI	CACGTG	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	373, 477
AfiI	CCNNNNNNNGG	3 cut(s)	157, 277, 376
AgsI	TTSAA	2 cut(s)	57, 455
AjnI	CCWGG	2 cut(s)	39, 233
AluBI	AGCT	6 cut(s)	181, 336, 390, 451, 485, 554
AluI	AGCT	6 cut(s)	181, 336, 390, 451, 485, 554
Alw21I	GWGCWC	3 cut(s)	24, 177, 392
Alw26I	GTCTC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	50, 127, 130, 366
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	288, 298
AsuHPI	GGTGA	2 cut(s)	129, 428
AvaII	GGWCC	2 cut(s)	288, 298
BanII	GRGCYC	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	3 cut(s)	24, 177, 392
BbvI	GCAGC	4 cut(s)	37, 114, 142, 353
BccI	CCATC	2 cut(s)	542, 577
BceAI	ACGGC	3 cut(s)	104, 494, 520
BciT130I	CCWGG	2 cut(s)	41, 235
BcoDI	GTCTC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	8 cut(s)	51, 117, 125, 128, 131, 271, 364, 367
BlsI	GCNGC	8 cut(s)	52, 118, 126, 129, 132, 272, 365, 368
Bme1390I	CCNGG	2 cut(s)	41, 235
Bme18I	GGWCC	2 cut(s)	288, 298
BmgT120I	GGNCC	2 cut(s)	288, 298
BmrFI	CCNGG	2 cut(s)	41, 235
BmsI	GCATC	2 cut(s)	234, 454
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	217
BsaHI	GRCGYC	2 cut(s)	373, 477
BsaJI	CCNNGG	2 cut(s)	276, 559
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 277, 376
Bse118I	RCCGGY	4 cut(s)	10, 242, 326, 369
Bse1I	ACTGG	2 cut(s)	263, 571
BseBI	CCWGG	2 cut(s)	41, 235
BseDI	CCNNGG	2 cut(s)	276, 559
BseGI	GGATG	4 cut(s)	27, 36, 442, 553
BseLI	CCNNNNNNNGG	3 cut(s)	157, 277, 376
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	2 cut(s)	263, 571
BseRI	GAGGAG	6 cut(s)	14, 53, 179, 293, 296, 310
BseXI	GCAGC	4 cut(s)	37, 114, 142, 353
Bsh1236I	CGCG	3 cut(s)	273, 394, 411
Bsh1285I	CGRYCG	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	3 cut(s)	24, 177, 392
BsiSI	CCGG	8 cut(s)	11, 151, 170, 243, 286, 327, 340, 370
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	3 cut(s)	157, 277, 376
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	577
Bsp1286I	GDGCHC	3 cut(s)	24, 177, 392
Bsp143I	GATC	3 cut(s)	86, 348, 501
Bsp68I	TCGCGA	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	3 cut(s)	273, 394, 411
BspMAI	CTGCAG	1 cut(s)	132
BsrFI	RCCGGY	4 cut(s)	10, 242, 326, 369
BsrI	ACTGG	2 cut(s)	263, 571
BssAI	RCCGGY	4 cut(s)	10, 242, 326, 369
BssECI	CCNNGG	2 cut(s)	276, 559
BssMI	GATC	3 cut(s)	86, 348, 501
BssNI	GRCGYC	2 cut(s)	373, 477
Bst2UI	CCWGG	2 cut(s)	41, 235
Bst4CI	ACNGT	2 cut(s)	141, 544
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	2 cut(s)	373, 477
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	9 cut(s)	12, 156, 240, 244, 328, 345, 371, 392, 487
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	27, 36, 442, 553
BstFNI	CGCG	3 cut(s)	273, 394, 411
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	89, 351, 504
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	86, 348, 501
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 130, 323, 360
BstNI	CCWGG	2 cut(s)	41, 235
BstSCI	CCNGG	2 cut(s)	39, 233
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	3 cut(s)	273, 394, 411
BstV1I	GCAGC	4 cut(s)	37, 114, 142, 353
BstV2I	GAAGAC	1 cut(s)	274
BtsCI	GGATG	4 cut(s)	27, 36, 442, 553
BtuMI	TCGCGA	1 cut(s)	394
Cac8I	GCNNGC	9 cut(s)	12, 156, 240, 244, 328, 345, 371, 392, 487
CaiI	CAGNNNCTG	1 cut(s)	366
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	4 cut(s)	10, 242, 326, 369
Cfr13I	GGNCC	2 cut(s)	288, 298
CpoI	CGGWCCG	1 cut(s)	288
CseI	GACGC	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	203, 238
CspI	CGGWCCG	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	3 cut(s)	88, 350, 503
DpnII	GATC	3 cut(s)	86, 348, 501
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	7 cut(s)	65, 71, 97, 173, 313, 345, 522
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	288, 298
Eco53kI	GAGCTC	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	39, 233
EcoT38I	GRGCYC	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	147
FaiI	YATR	1 cut(s)	429
FaqI	GGGAC	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	8 cut(s)	51, 117, 125, 128, 131, 271, 364, 367
FokI	GGATG	4 cut(s)	14, 23, 449, 560
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	8 cut(s)	51, 117, 125, 128, 131, 271, 364, 367
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	8 cut(s)	51, 117, 125, 128, 131, 271, 364, 367
GsuI	CTGGAG	1 cut(s)	293
HapII	CCGG	8 cut(s)	11, 151, 170, 243, 286, 327, 340, 370
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	2 cut(s)	373, 477
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	2 cut(s)	248, 293
HpaII	CCGG	8 cut(s)	11, 151, 170, 243, 286, 327, 340, 370
HphI	GGTGA	2 cut(s)	129, 428
Hpy166II	GTNNAC	2 cut(s)	472, 540
Hpy188I	TCNGA	4 cut(s)	292, 298, 461, 560
Hpy188III	TCNNGA	5 cut(s)	310, 377, 393, 473, 592
Hpy8I	GTNNAC	2 cut(s)	472, 540
Hpy99I	CGWCG	7 cut(s)	10, 50, 479, 482, 500, 509, 515
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	141, 544
HpyCH4IV	ACGT	3 cut(s)	216, 357, 477
HpyCH4V	TGCA	2 cut(s)	130, 225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 130, 323, 360
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	3 cut(s)	216, 357, 477
Hsp92I	GRCGYC	2 cut(s)	373, 477
HspAI	GCGC	1 cut(s)	273
KroI	GCCGGC	4 cut(s)	10, 242, 326, 369
KroNI	GCCGGC	4 cut(s)	12, 244, 328, 371
Kzo9I	GATC	3 cut(s)	86, 348, 501
LmnI	GCTCC	5 cut(s)	27, 172, 186, 448, 551
Lsp1109I	GCAGC	4 cut(s)	37, 114, 142, 353
LweI	GCATC	2 cut(s)	234, 454
MaeII	ACGT	3 cut(s)	216, 357, 477
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	88, 350, 503
MboI	GATC	3 cut(s)	86, 348, 501
MboII	GAAGA	2 cut(s)	25, 274
MhlI	GDGCHC	3 cut(s)	24, 177, 392
MluCI	AATT	3 cut(s)	382, 405, 419
MlyI	GAGTC	2 cut(s)	257, 287
MmeI	TCCRAC	1 cut(s)	315
MreI	CGCCGGCG	3 cut(s)	10, 242, 326
MroNI	GCCGGC	4 cut(s)	10, 242, 326, 369
MspA1I	CMGCKG	2 cut(s)	127, 366
MspI	CCGG	8 cut(s)	11, 151, 170, 243, 286, 327, 340, 370
MspR9I	CCNGG	2 cut(s)	41, 235
MvaI	CCWGG	2 cut(s)	41, 235
MvnI	CGCG	3 cut(s)	273, 394, 411
MwoI	GCNNNNNNNGC	4 cut(s)	116, 130, 323, 360
NaeI	GCCGGC	4 cut(s)	12, 244, 328, 371
NdeII	GATC	3 cut(s)	86, 348, 501
NgoMIV	GCCGGC	4 cut(s)	10, 242, 326, 369
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	101
NruI	TCGCGA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	5 cut(s)	11, 213, 486, 501, 510
PdiI	GCCGGC	4 cut(s)	12, 244, 328, 371
PkrI	GCNGC	8 cut(s)	52, 118, 126, 129, 132, 272, 365, 368
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	2 cut(s)	256, 287
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	2 cut(s)	256, 287
Ppu21I	YACGTR	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	39, 233
PspCI	CACGTG	1 cut(s)	217
PspGI	CCWGG	2 cut(s)	39, 233
PspPI	GGNCC	2 cut(s)	288, 298
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	366
PvuI	CGATCG	1 cut(s)	351
RruI	TCGCGA	1 cut(s)	394
Rsr2I	CGGWCCG	1 cut(s)	288
RsrII	CGGWCCG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	392
SatI	GCNGC	8 cut(s)	51, 117, 125, 128, 131, 271, 364, 367
Sau3AI	GATC	3 cut(s)	86, 348, 501
Sau96I	GGNCC	2 cut(s)	288, 298
SchI	GAGTC	2 cut(s)	257, 287
ScrFI	CCNGG	2 cut(s)	41, 235
SduI	GDGCHC	3 cut(s)	24, 177, 392
SfaNI	GCATC	2 cut(s)	234, 454
SfcI	CTRYAG	1 cut(s)	128
SgrAI	CRCCGGYG	3 cut(s)	10, 242, 326
SinI	GGWCC	2 cut(s)	288, 298
Sse9I	AATT	3 cut(s)	382, 405, 419
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	39, 233
TaaI	ACNGT	2 cut(s)	141, 544
TaiI	ACGT	3 cut(s)	219, 360, 480
TaqI	TCGA	6 cut(s)	165, 228, 386, 423, 480, 519
TasI	AATT	3 cut(s)	382, 405, 419
TauI	GCSGC	4 cut(s)	119, 127, 273, 366
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	50, 127, 130, 366
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	288, 298
XapI	RAATTY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	539
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.