Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

605574 .. 608154

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGGAGTCCTCCTGCGAAGAAAGTCCTGATCACCTCCAATGGCAACGAGATTTCACAGAGCATCGCCTTCTCTCTGGCCCAACGCGGCTGCAGGTTGGTGTTAATGGGAAAAGAGAGCTTCCTGCGGGGTATTGTGCAGAAAATAACGGCCTCACTGGAGTGTGCGGTGGCGCCGGTGGAGATGGTGGACGTGGACATGGAGGACGAGAGGGAGGGAGCTTTTGATGAGGCGGTGGAGAAGGCATGCAACATCCTGGGTGGTTCAATCGTATTGTTCACATCGATAATTGGAGCTGAAAGAGGGATTTATCCAGGAGCTGCTGCCTATAGTGCATGTTCGGCAGGCCTTCAGCAGTTAGCTAGGATCAGGGTCTATGCTATTGCCCGTGGTTTGCATCTACAAGACGAATATCCAAAGTTTGTGGGAGTGGAAAGAGCGAAGAAGCTGGTGAAGGAGGCAGCTCTATTGGGGAGATGGCTTGATGTTAAAAATGATCTGGTTTCAACTGTCATATATTGGTCACGGTACATGACAGGCACAACAATATTTGTGGATGGGGCAATGTCTCTGACAAGACCTCGGATGCGTTCTTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

201

Amino Acids

21.83

Weight (kDa)

8.68

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	87, 127, 167, 233
AclWI	GGATC	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	267, 507
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	255, 313
AleI	CACNNNNGTG	1 cut(s)	160
AluBI	AGCT	7 cut(s)	120, 221, 296, 320, 362, 448, 464
AluI	AGCT	7 cut(s)	120, 221, 296, 320, 362, 448, 464
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	3 cut(s)	78, 150, 346
ApeKI	GCWGC	4 cut(s)	90, 320, 323, 461
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	25, 463
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	77, 307, 310, 473
BccI	CCATC	3 cut(s)	178, 471, 551
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	257, 315
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	2 cut(s)	91, 328
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	5 cut(s)	88, 91, 321, 324, 462
BlsI	GCNGC	5 cut(s)	89, 92, 322, 325, 463
Bme1390I	CCNGG	2 cut(s)	257, 315
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	257, 315
BmsI	GCATC	3 cut(s)	72, 406, 576
BpmI	CTGGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	256, 388, 581
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	257, 315
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	256, 388, 581
BseGI	GGATG	3 cut(s)	252, 562, 591
BseMI	GCAATG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	4 cut(s)	77, 307, 310, 473
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	80, 152, 348
BshNI	GGYRCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	573
BsnI	GGCC	3 cut(s)	80, 152, 348
Bsp143I	GATC	3 cut(s)	30, 366, 496
BspACI	CCGC	4 cut(s)	87, 127, 167, 233
BspANI	GGCC	3 cut(s)	80, 152, 348
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	256, 388, 581
BssMI	GATC	3 cut(s)	30, 366, 496
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	2 cut(s)	257, 315
Bst4CI	ACNGT	2 cut(s)	511, 528
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	247, 346
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	252, 562, 591
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	33, 369, 499
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	3 cut(s)	30, 366, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 341
BstNI	CCWGG	2 cut(s)	257, 315
BstNSI	RCATGY	2 cut(s)	249, 339
BstSCI	CCNGG	2 cut(s)	255, 313
BstSFI	CTRYAG	2 cut(s)	91, 328
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	77, 307, 310, 473
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	80, 152, 348
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	252, 562, 591
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	247, 346
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	4 cut(s)	405, 440, 534, 569
CviAII	CATG	4 cut(s)	199, 246, 336, 532
CviQI	GTAC	1 cut(s)	529
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	3 cut(s)	32, 368, 498
DpnII	GATC	3 cut(s)	30, 366, 496
Eco147I	AGGCCT	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	255, 313
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaeI	CATG	4 cut(s)	202, 249, 339, 535
FaiI	YATR	9 cut(s)	200, 247, 330, 337, 378, 515, 517, 533, 599
FatI	CATG	4 cut(s)	198, 245, 335, 531
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	88, 91, 321, 324, 462
FokI	GGATG	3 cut(s)	239, 569, 598
Fsp4HI	GCNGC	5 cut(s)	88, 91, 321, 324, 462
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	5 cut(s)	88, 91, 321, 324, 462
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	80, 152, 348
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	4 cut(s)	202, 249, 339, 535
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	25, 463
Hpy166II	GTNNAC	3 cut(s)	190, 196, 279
Hpy188I	TCNGA	2 cut(s)	573, 585
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	3 cut(s)	190, 196, 279
HpyAV	CCTTC	4 cut(s)	79, 235, 359, 448
HpyCH4III	ACNGT	2 cut(s)	511, 528
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	5 cut(s)	93, 139, 249, 335, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 341
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	202, 249, 339, 535
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	30, 366, 496
LmnI	GCTCC	3 cut(s)	218, 293, 317
Lsp1109I	GCAGC	4 cut(s)	77, 307, 310, 473
LweI	GCATC	3 cut(s)	72, 406, 576
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	3 cut(s)	32, 368, 498
MboI	GATC	3 cut(s)	30, 366, 496
MboII	GAAGA	2 cut(s)	31, 454
MluCI	AATT	1 cut(s)	288
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	104, 489
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	257, 315
MvaI	CCWGG	2 cut(s)	257, 315
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	332, 341
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	3 cut(s)	30, 366, 496
NlaIII	CATG	4 cut(s)	202, 249, 339, 535
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	522
NspI	RCATGY	2 cut(s)	249, 339
OliI	CACNNNNGTG	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	348
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	89, 92, 322, 325, 463
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	255, 313
PspGI	CCWGG	2 cut(s)	255, 313
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	104, 489
SatI	GCNGC	5 cut(s)	88, 91, 321, 324, 462
Sau3AI	GATC	3 cut(s)	30, 366, 496
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	257, 315
SfaNI	GCATC	3 cut(s)	72, 406, 576
SfcI	CTRYAG	2 cut(s)	91, 328
SfoI	GGCGCC	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	288
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	4 cut(s)	87, 127, 167, 233
SspDI	GGCGCC	1 cut(s)	172
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	255, 313
TaaI	ACNGT	2 cut(s)	511, 528
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	284
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	104, 489
Tru9I	TTAA	2 cut(s)	104, 489
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	4 cut(s)	90, 320, 323, 461
Tsp45I	GTSAC	1 cut(s)	522
TspRI	CASTG	1 cut(s)	162
XceI	RCATGY	2 cut(s)	249, 339
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.