Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Forward (+)

62 .. 1209

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgtctgcttggtttctggtaaaggccgttggcagaagaatgcgagatcataagtcaggaggttccatcatattgttgacctcgattgttggagctgaaagagggctttatacaggagctgccgcctatggtgcatgttcagcagcactgcagcagttagtaaggtcatcggcattggagattggaaaatacaagatcagggtcaatgcaattgcacgtggtttgcatgtggaagatgaatttcccatgtctgtgggaatagatagagcaaagaagctggtgaaggatgcagttccactggaaagatggcttgatgttacaaatgatgtcgcttcaactgtcatatatttagtcagtgatggttcaaggtacatgactggcacaactatatttgtcgatggggcacagtctctcatgaggcctcggatgcgttcttatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

147

Amino Acids

16.1

Weight (kDa)

9.8

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	336, 366
AluBI	AGCT	3 cut(s)	95, 119, 277
AluI	AGCT	3 cut(s)	95, 119, 277
Alw26I	GTCTC	1 cut(s)	414
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	24, 419
ApeKI	GCWGC	3 cut(s)	119, 143, 151
ApoI	RAATTY	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	406
BbrPI	CACGTG	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	106, 155, 163
BccI	CCATC	4 cut(s)	74, 300, 353, 392
BceAI	ACGGC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	4 cut(s)	120, 123, 144, 152
BlsI	GCNGC	4 cut(s)	121, 124, 145, 153
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	2 cut(s)	277, 417
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	303, 382
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	292, 432
BseNI	ACTGG	2 cut(s)	303, 382
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	106, 155, 163
BshFI	GGCC	2 cut(s)	26, 421
BsmAI	GTCTC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	26, 421
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	46, 195
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	26, 421
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	303, 382
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	46, 195
Bst4CI	ACNGT	2 cut(s)	340, 408
BstBAI	YACGTR	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	292, 432
BstKTI	GATC	2 cut(s)	49, 198
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	46, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 427
BstNSI	RCATGY	2 cut(s)	138, 230
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	106, 155, 163
BstXI	CCANNNNNNTGG	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	26, 421
BtsCI	GGATG	2 cut(s)	292, 432
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	3 cut(s)	146, 296, 361
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	5 cut(s)	135, 227, 247, 373, 415
CviJI	RGCY	7 cut(s)	26, 95, 106, 119, 277, 310, 421
CviKI_1	RGCY	7 cut(s)	26, 95, 106, 119, 277, 310, 421
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	2 cut(s)	48, 197
DpnII	GATC	2 cut(s)	46, 195
Eco147I	AGGCCT	1 cut(s)	421
Eco72I	CACGTG	1 cut(s)	218
FaeI	CATG	5 cut(s)	138, 230, 250, 376, 418
FatI	CATG	5 cut(s)	134, 226, 246, 372, 414
Fnu4HI	GCNGC	4 cut(s)	120, 123, 144, 152
FokI	GGATG	2 cut(s)	299, 439
Fsp4HI	GCNGC	4 cut(s)	120, 123, 144, 152
GluI	GCNGC	4 cut(s)	120, 123, 144, 152
HaeIII	GGCC	2 cut(s)	26, 421
Hin1II	CATG	5 cut(s)	138, 230, 250, 376, 418
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	2 cut(s)	57, 415
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	340, 408
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	6 cut(s)	134, 151, 209, 215, 226, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 427
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	5 cut(s)	138, 230, 250, 376, 418
Kzo9I	GATC	2 cut(s)	46, 195
LmnI	GCTCC	2 cut(s)	92, 116
LpnPI	CCDG	7 cut(s)	2, 42, 99, 184, 263, 284, 363
Lsp1109I	GCAGC	3 cut(s)	106, 155, 163
LweI	GCATC	2 cut(s)	277, 417
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	48, 197
MboI	GATC	2 cut(s)	46, 195
MboII	GAAGA	2 cut(s)	48, 245
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	2 cut(s)	210, 239
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	5 cut(s)	53, 91, 95, 411, 432
MslI	CAYNNNNRTG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 427
NdeII	GATC	2 cut(s)	46, 195
NlaIII	CATG	5 cut(s)	138, 230, 250, 376, 418
NlaIV	GGNNCC	1 cut(s)	64
NspI	RCATGY	2 cut(s)	138, 230
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	421
PctI	GAATGC	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	121, 124, 145, 153
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	218
PspCI	CACGTG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	4 cut(s)	120, 123, 144, 152
Sau3AI	GATC	2 cut(s)	46, 195
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	64, 83, 97, 121, 167, 220, 279, 371
SfaNI	GCATC	2 cut(s)	277, 417
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	210, 239
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	340, 408
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	83, 396
TasI	AATT	2 cut(s)	210, 239
TauI	GCSGC	1 cut(s)	125
TscAI	CASTG	3 cut(s)	153, 303, 361
TseI	GCWGC	3 cut(s)	119, 143, 151
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	153, 303, 361
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	2 cut(s)	138, 230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.