Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006083

Physical Location & Seq

Genomic Coordinates Reverse (-)

26858443 .. 26861874

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGGACTTCTCCTGGGAAGAAAGTTTTGCTCACCTCCAATGGGGATGCCATTTCACACAATATTGCCTTCTCTTTGGCCCAGCGGGGATGCAGGCTGGTCTTGATGGGAAAGGAGAGCTGTCTGCGGAGCATTCAACAGAAAATAAAGGGCTCATTGGAGGGTGTCGTGCCAGTTGAGGTGGTTGATGTAGACATGGAGGACGAGAGAGAAGGAGCTTTTGATGAGGCAGTGGATAAGGCATGCCACATTTTGGGCAATTTGGATGCCTTTGTGCATTGCTATACTTATGAAGGGAAAATGCAGGAGCATCTAGAATTAGCTGAAGATGAGTTTAAAAAGATAATGAAGAGGAACTTTATGTCTGCATGGTTTCTGTTAAATGCTGTTGGCAGAAGAATGCGAGATTATAAGTCAGGAGGTTCCATCATATTTTTGACCTCGATAATTGGAGCTGAAAGAGGGATTTATCCAGGAGCTGCTGCCTACAGTGCATGCTCGGCAGCCGTGCAGCAGTTAGCTAGGACATCGGCTTTGGAGATTGGTAGATACCAGATTAGGGTCAATGCAATTGCCCGTGGTTTGCACCTAGAAGATGAATATCCAATGTTTGTGGGTATGGAGAGAGCAAAAAAGTTGGTGAAGGAGGCAGCTCCATTGGAGAGATGGCTTGATGTTAAAAACGATCTGGCTTCAACTGTCATATATTTAATCAGTGATGGGTCAAAGTACATGACAGGCACAACCATATTTGTTGATGGGGCACAGTCTTTGACGAGACCTCGGATGCGCTCTTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

268

Amino Acids

29.65

Weight (kDa)

7.63

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980 AT3G01980
fragaria_vesca	FvH4_6g53780 FvH4_6g53780 FvH4_6g53780
malus_domestica	MD09G1008700.v1.1 MD17G1001600.v1.1
prunus_persica	Prupe.3G308300_v2.0.a1
pyrus_communis	pycom15g18620 pycom17g00720 pycom17g00740
rosa_chinensis	RchiOBHm_Chr2g0175921
rosa_laevigata	RLG00000022364
rosa_multiflora	Rmu_sc0028327.1_g000001 Rmu_ssc0000114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076950
rosa_rugosa	Rorug02G0588500 Rorug02G0588600
rosa_samantha	Rh2AG667800 Rh2BG679300 Rh2CG642100 Rh2DG692800
rosa_wichuraiana	Rw2G054740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	85, 127
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	3 cut(s)	42, 253, 559
AgsI	TTSAA	2 cut(s)	137, 696
AjnI	CCWGG	2 cut(s)	13, 472
AluBI	AGCT	7 cut(s)	120, 218, 323, 455, 479, 521, 653
AluI	AGCT	7 cut(s)	120, 218, 323, 455, 479, 521, 653
Alw26I	GTCTC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	5 cut(s)	479, 482, 503, 511, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	25, 652
BaeGI	GKGCMC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	5 cut(s)	466, 469, 515, 523, 662
BccI	CCATC	5 cut(s)	100, 434, 660, 713, 752
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	15, 474
BcoDI	GTCTC	1 cut(s)	772
BfaI	CTAG	3 cut(s)	314, 522, 590
BfmI	CTRYAG	1 cut(s)	487
BisI	GCNGC	5 cut(s)	480, 483, 504, 512, 651
BlsI	GCNGC	5 cut(s)	481, 484, 505, 513, 652
Bme1390I	CCNGG	2 cut(s)	15, 474
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	15, 474
BmsI	GCATC	5 cut(s)	37, 80, 256, 319, 777
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	14, 577, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 253, 559
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	15, 474
BseDI	CCNNGG	3 cut(s)	14, 577, 782
BseGI	GGATG	4 cut(s)	52, 95, 271, 792
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	42, 253, 559
BseMI	GCAATG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	5 cut(s)	466, 469, 515, 523, 662
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	42, 253, 559
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	132, 405
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	155, 766
Bsp143I	GATC	1 cut(s)	685
BspACI	CCGC	2 cut(s)	85, 127
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	14, 577, 782
BssMI	GATC	1 cut(s)	685
Bst2UI	CCWGG	2 cut(s)	15, 474
Bst4CI	ACNGT	3 cut(s)	491, 700, 768
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	95, 244, 496
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	4 cut(s)	52, 95, 271, 792
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	1 cut(s)	688
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	1 cut(s)	685
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 500
BstNI	CCWGG	2 cut(s)	15, 474
BstNSI	RCATGY	2 cut(s)	246, 498
BstSCI	CCNGG	2 cut(s)	13, 472
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	5 cut(s)	466, 469, 515, 523, 662
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	4 cut(s)	52, 95, 271, 792
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	3 cut(s)	237, 496, 721
Cac8I	GCNNGC	3 cut(s)	95, 244, 496
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	5 cut(s)	196, 243, 369, 495, 733
CviQI	GTAC	1 cut(s)	730
DpnI	GATC	1 cut(s)	687
DpnII	GATC	1 cut(s)	685
DraI	TTTAAA	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	13, 472
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	5 cut(s)	199, 246, 372, 498, 736
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	195, 242, 368, 494, 732
FauI	CCCGC	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	480, 483, 504, 512, 651
FokI	GGATG	4 cut(s)	59, 102, 278, 799
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	480, 483, 504, 512, 651
FspBI	CTAG	3 cut(s)	314, 522, 590
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	5 cut(s)	480, 483, 504, 512, 651
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	199, 246, 372, 498, 736
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HphI	GGTGA	2 cut(s)	25, 652
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	786
Hpy188III	TCNNGA	3 cut(s)	103, 314, 417
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	4 cut(s)	79, 206, 287, 637
HpyCH4III	ACNGT	3 cut(s)	491, 700, 768
HpyCH4V	TGCA	8 cut(s)	93, 277, 304, 368, 494, 511, 569, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 500
Hsp92II	CATG	5 cut(s)	199, 246, 372, 498, 736
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	1 cut(s)	685
LmnI	GCTCC	6 cut(s)	129, 215, 307, 452, 476, 658
Lsp1109I	GCAGC	5 cut(s)	466, 469, 515, 523, 662
LweI	GCATC	5 cut(s)	37, 80, 256, 319, 777
MaeI	CTAG	3 cut(s)	314, 522, 590
MalI	GATC	1 cut(s)	687
MboI	GATC	1 cut(s)	685
MboII	GAAGA	5 cut(s)	31, 338, 361, 408, 605
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	155, 766
MluCI	AATT	4 cut(s)	259, 317, 447, 570
MseI	TTAA	4 cut(s)	336, 380, 678, 710
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	15, 474
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	132, 405
MvaI	CCWGG	2 cut(s)	15, 474
MwoI	GCNNNNNNNGC	2 cut(s)	491, 500
NdeII	GATC	1 cut(s)	685
NlaIII	CATG	5 cut(s)	199, 246, 372, 498, 736
NlaIV	GGNNCC	1 cut(s)	424
NmeAIII	GCCGAG	1 cut(s)	479
NspI	RCATGY	2 cut(s)	246, 498
PaeI	GCATGC	2 cut(s)	246, 498
PctI	GAATGC	2 cut(s)	132, 405
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	481, 484, 505, 513, 652
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	13, 472
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	13, 472
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SaqAI	TTAA	4 cut(s)	336, 380, 678, 710
SatI	GCNGC	5 cut(s)	480, 483, 504, 512, 651
Sau3AI	GATC	1 cut(s)	685
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	15, 474
SduI	GDGCHC	2 cut(s)	155, 766
SfaNI	GCATC	5 cut(s)	37, 80, 256, 319, 777
SfcI	CTRYAG	1 cut(s)	487
SphI	GCATGC	2 cut(s)	246, 498
Sse9I	AATT	4 cut(s)	259, 317, 447, 570
SsiI	CCGC	2 cut(s)	85, 127
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	3 cut(s)	314, 522, 590
StyD4I	CCNGG	2 cut(s)	13, 472
TaaI	ACNGT	3 cut(s)	491, 700, 768
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	259, 317, 447, 570
TatI	WGTACW	1 cut(s)	729
Tru1I	TTAA	4 cut(s)	336, 380, 678, 710
Tru9I	TTAA	4 cut(s)	336, 380, 678, 710
TscAI	CASTG	3 cut(s)	237, 496, 721
TseI	GCWGC	5 cut(s)	479, 482, 503, 511, 650
TspDTI	ATGAA	3 cut(s)	306, 362, 612
TspRI	CASTG	3 cut(s)	237, 496, 721
Van91I	CCANNNNNTGG	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	2 cut(s)	246, 498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	3 cut(s)	314, 522, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.