AT3G02420

Uncharacterised protein family (UPF0121)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013573
Physical Location & Seq
Reverse (-)
495884 .. 498964
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02420.2

Sequence Viewer

Length: 1047 bp
ATGGCGGAAGGCGGCGAAGATTCCCAGCGGTTGAAGAAAATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCCGATTACTGGTCCAATATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAAATTCTACCAACGCTACATCGATCCTGATCTTGTTGTGGAGCCTATGTCGACTTCATCTTCGTCTTCACAATCTGCCAGGCCAACTGCTACATCTGCATCTTCAACTGCATCTTCTAATGCAAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACCTCTGGGCCATCTGCTACGACTGGTGCAACCCCAAGTTCAATGCGCTGGGATGAGCAGACGATTCAGTTTTCAGTCAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCTCTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCATGCTCATCTCTATATTCCTTATACTCCTTATACGGGAGGCCAAGGGCATGGAATATGCAAGGGCTGCAAGTTTATTTTCAATCAATTGTGGCAGCAAAGGATTTCATCTACTTCATCTACTGCCTTACATTCGTCACTTCACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGCCAAGTTCTTGAGGCGTAACTTTGGTCGGTCCACTATATACAGAAAGTACTTGGAAGACCCTTGTGTGTGGGTGGAGTCAAACACTACTACCCTCAACATCTTGTCATCGCAGGCTGAGATAGCCATTGGCTTCCTTCTGATTATCTCTCTGCTCTCATGGCAACGTAACATTATACAGACGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCTGGTTACCACCAGAGCACGTGGAGCAGAATAGGGAGGACGGTGACTCCGATTATCCAACGTTACGCTCCTTTCTTGAATACTCCGGTCAGTGCCGTTCAGAGATGGTGGTTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

348

Amino Acids

39.61

Weight (kDa)

9.68

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM33_Pom33 PF03661 60 - 238 4.1e-15 Transmembrane protein 33/Nucleoporin POM33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02420 AT3G02420
fragaria_vesca FvH4_6g45520 FvH4_6g45520
malus_domestica MD09G1082200.v1.1 MD17G1072900.v1.1
prunus_persica Prupe.3G241500_v2.0.a1
pyrus_communis pycom09g00870 pycom17g07380
rosa_chinensis RchiOBHm_Chr2g0163461
rosa_laevigata RLG00000021403
rosa_multiflora Rmu_sc0012243.1_g000002
rosa_roxburghii Rroxscaffold_2G00087300
rosa_samantha Rh2AG569900 Rh2BG582100 Rh2CG551900 Rh2DG591800
rosa_wichuraiana Rw2G047180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 141, 206
AciI CCGC 5 cut(s) 5, 12, 28, 44, 47
AclI AACGTT 1 cut(s) 988
AclWI GGATC 2 cut(s) 173, 316
AcsI RAATTY 1 cut(s) 158
AcvI CACGTG 1 cut(s) 948
AfaI GTAC 2 cut(s) 746, 887
AfiI CCNNNNNNNGG 2 cut(s) 90, 531
AgeI ACCGGT 1 cut(s) 919
AgsI TTSAA 8 cut(s) 34, 151, 261, 363, 578, 689, 901, 1006
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 4 cut(s) 422, 895, 904, 929
AluI AGCT 4 cut(s) 422, 895, 904, 929
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 2 cut(s) 173, 316
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 4 cut(s) 81, 236, 329, 536
ApeKI GCWGC 4 cut(s) 50, 562, 590, 892
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AsiGI ACCGGT 1 cut(s) 919
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 156, 369
AspS9I GGNCC 4 cut(s) 81, 93, 329, 726
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 93, 726
BaeGI GKGCMC 1 cut(s) 685
BbrPI CACGTG 1 cut(s) 948
BbsI GAAGAC 2 cut(s) 213, 759
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 4 cut(s) 37, 549, 602, 904
BccI CCATC 4 cut(s) 72, 340, 677, 1026
BceAI ACGGC 1 cut(s) 1007
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 653
BisI GCNGC 7 cut(s) 13, 45, 48, 51, 563, 591, 893
BlsI GCNGC 7 cut(s) 14, 46, 49, 52, 564, 592, 894
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 2 cut(s) 235, 680
Bme18I GGWCC 2 cut(s) 93, 726
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 4 cut(s) 81, 93, 329, 726
BmiI GGNNCC 2 cut(s) 198, 315
BmrFI CCNGG 2 cut(s) 235, 680
BmsI GCATC 2 cut(s) 263, 275
BpiI GAAGAC 2 cut(s) 213, 759
BpuEI CTTGAG 2 cut(s) 635, 727
BpuMI CCSGG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 948
BsaBI GATNNNNATC 2 cut(s) 183, 668
BsaJI CCNNGG 2 cut(s) 132, 539
BsaWI WCCGGW 2 cut(s) 919, 1012
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 958, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 531
Bse118I RCCGGY 1 cut(s) 919
Bse1I ACTGG 3 cut(s) 95, 349, 893
Bse8I GATNNNNATC 2 cut(s) 183, 668
BseBI CCWGG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 132, 539
BseGI GGATG 2 cut(s) 105, 379
BseJI GATNNNNATC 2 cut(s) 183, 668
BseLI CCNNNNNNNGG 2 cut(s) 90, 531
BseMII CTCAG 2 cut(s) 318, 804
BseNI ACTGG 3 cut(s) 95, 349, 893
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 4 cut(s) 37, 549, 602, 904
BseYI CCCAGC 2 cut(s) 24, 369
BshFI GGCC 4 cut(s) 83, 238, 331, 538
BshTI ACCGGT 1 cut(s) 919
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 679, 920, 1013
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 90, 531
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 4 cut(s) 83, 238, 331, 538
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 685, 947
Bsp143I GATC 3 cut(s) 178, 184, 308
BspACI CCGC 5 cut(s) 5, 12, 28, 44, 47
BspANI GGCC 4 cut(s) 83, 238, 331, 538
BspCNI CTCAG 2 cut(s) 317, 805
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 198, 315
BspPI GGATC 2 cut(s) 173, 316
BsrFI RCCGGY 1 cut(s) 919
BsrI ACTGG 3 cut(s) 95, 349, 893
BssAI RCCGGY 1 cut(s) 919
BssECI CCNNGG 2 cut(s) 132, 539
BssMI GATC 3 cut(s) 178, 184, 308
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 970
BstAPI GCANNNNNTGC 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 948
BstC8I GCNNGC 3 cut(s) 429, 499, 810
BstDEI CTNAG 2 cut(s) 304, 813
BstEII GGTNACC 1 cut(s) 932
BstF5I GGATG 2 cut(s) 105, 379
BstHHI GCGC 2 cut(s) 156, 369
BstKTI GATC 3 cut(s) 181, 187, 311
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 3 cut(s) 178, 184, 308
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 501
BstPI GGTNACC 1 cut(s) 932
BstSCI CCNGG 2 cut(s) 233, 678
BstSLI GKGCMC 1 cut(s) 685
BstV1I GCAGC 4 cut(s) 37, 549, 602, 904
BstV2I GAAGAC 2 cut(s) 213, 759
BstXI CCANNNNNNTGG 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 4 cut(s) 83, 238, 331, 538
BsuTUI ATCGAT 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 789
BtsCI GGATG 2 cut(s) 105, 379
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 438, 1024
Cac8I GCNNGC 3 cut(s) 429, 499, 810
CfoI GCGC 2 cut(s) 156, 369
Cfr10I RCCGGY 1 cut(s) 919
Cfr13I GGNCC 4 cut(s) 81, 93, 329, 726
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 745, 886
CspAI ACCGGT 1 cut(s) 919
CviAII CATG 6 cut(s) 118, 487, 498, 546, 855, 883
CviQI GTAC 2 cut(s) 745, 886
DdeI CTNAG 2 cut(s) 304, 813
DpnI GATC 3 cut(s) 180, 186, 310
DpnII GATC 3 cut(s) 178, 184, 308
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 93, 726
Eco72I CACGTG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 932
EcoO65I GGTNACC 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 6 cut(s) 121, 490, 501, 549, 858, 886
FaqI GGGAC 1 cut(s) 114
FatI CATG 6 cut(s) 117, 486, 497, 545, 854, 882
FblI GTMKAC 2 cut(s) 141, 206
Fnu4HI GCNGC 7 cut(s) 13, 45, 48, 51, 563, 591, 893
FokI GGATG 2 cut(s) 92, 386
Fsp4HI GCNGC 7 cut(s) 13, 45, 48, 51, 563, 591, 893
GlaI GCGC 2 cut(s) 155, 368
GluI GCNGC 7 cut(s) 13, 45, 48, 51, 563, 591, 893
GsaI CCCAGC 2 cut(s) 28, 373
HaeIII GGCC 4 cut(s) 83, 238, 331, 538
HapII CCGG 3 cut(s) 679, 920, 1013
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 156, 369
Hin1II CATG 6 cut(s) 121, 490, 501, 549, 858, 886
Hin6I GCGC 2 cut(s) 154, 367
HinP1I GCGC 2 cut(s) 154, 367
HincII GTYRAC 2 cut(s) 142, 207
HindII GTYRAC 2 cut(s) 142, 207
HinfI GANTC 5 cut(s) 20, 385, 664, 773, 973
HpaII CCGG 3 cut(s) 679, 920, 1013
HphI GGTGA 1 cut(s) 982
Hpy166II GTNNAC 4 cut(s) 142, 207, 296, 729
Hpy188I TCNGA 3 cut(s) 837, 978, 1029
Hpy188III TCNNGA 5 cut(s) 131, 182, 306, 706, 1003
Hpy8I GTNNAC 4 cut(s) 142, 207, 296, 729
Hpy99I CGWCG 2 cut(s) 74, 143
HpyAV CCTTC 2 cut(s) 64, 842
HpyCH4III ACNGT 1 cut(s) 970
HpyCH4IV ACGT 4 cut(s) 862, 878, 947, 988
HpyCH4V TGCA 7 cut(s) 254, 266, 278, 350, 497, 556, 565
HpyF3I CTNAG 2 cut(s) 304, 813
HpySE526I ACGT 4 cut(s) 862, 878, 947, 988
Hsp92II CATG 6 cut(s) 121, 490, 501, 549, 858, 886
HspAI GCGC 2 cut(s) 154, 367
Kzo9I GATC 3 cut(s) 178, 184, 308
LmnI GCTCC 3 cut(s) 196, 951, 1000
Lsp1109I GCAGC 4 cut(s) 37, 549, 602, 904
LweI GCATC 2 cut(s) 263, 275
MaeII ACGT 4 cut(s) 862, 878, 947, 988
MaeIII GTNAC 7 cut(s) 631, 713, 863, 922, 932, 970, 989
MalI GATC 3 cut(s) 180, 186, 310
MboI GATC 3 cut(s) 178, 184, 308
MboII GAAGA 7 cut(s) 29, 46, 207, 213, 249, 261, 764
MfeI CAATTG 1 cut(s) 582
MhlI GDGCHC 2 cut(s) 685, 947
MluCI AATT 3 cut(s) 39, 158, 582
MlyI GAGTC 2 cut(s) 782, 967
MmeI TCCRAC 1 cut(s) 1009
MroXI GAANNNNTTC 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 28, 929
MspI CCGG 3 cut(s) 679, 920, 1013
MspR9I CCNGG 2 cut(s) 235, 680
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 235
NciI CCSGG 1 cut(s) 680
NdeII GATC 3 cut(s) 178, 184, 308
NlaIII CATG 6 cut(s) 121, 490, 501, 549, 858, 886
NlaIV GGNNCC 2 cut(s) 198, 315
NmuCI GTSAC 2 cut(s) 631, 970
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 974
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 3 cut(s) 20, 385, 664
PinAI ACCGGT 1 cut(s) 919
PkrI GCNGC 7 cut(s) 14, 46, 49, 52, 564, 592, 894
PleI GAGTC 2 cut(s) 781, 967
PmaCI CACGTG 1 cut(s) 948
PmlI CACGTG 1 cut(s) 948
PpsI GAGTC 2 cut(s) 781, 967
Ppu21I YACGTR 1 cut(s) 948
Psp1406I AACGTT 1 cut(s) 988
Psp6I CCWGG 1 cut(s) 233
PspCI CACGTG 1 cut(s) 948
PspEI GGTNACC 1 cut(s) 932
PspFI CCCAGC 2 cut(s) 24, 369
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 198, 315
PspPI GGNCC 4 cut(s) 81, 93, 329, 726
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 2 cut(s) 746, 887
RsaNI GTAC 2 cut(s) 745, 886
SalI GTCGAC 2 cut(s) 140, 205
SatI GCNGC 7 cut(s) 13, 45, 48, 51, 563, 591, 893
Sau3AI GATC 3 cut(s) 178, 184, 308
Sau96I GGNCC 4 cut(s) 81, 93, 329, 726
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 2 cut(s) 782, 967
ScrFI CCNGG 2 cut(s) 235, 680
SduI GDGCHC 2 cut(s) 685, 947
SfaNI GCATC 2 cut(s) 263, 275
SinI GGWCC 2 cut(s) 93, 726
SmlI CTYRAG 2 cut(s) 650, 706
SmoI CTYRAG 2 cut(s) 650, 706
SphI GCATGC 1 cut(s) 501
Sse9I AATT 3 cut(s) 39, 158, 582
SsiI CCGC 5 cut(s) 5, 12, 28, 44, 47
StyD4I CCNGG 2 cut(s) 233, 678
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 1 cut(s) 970
TaiI ACGT 4 cut(s) 865, 881, 950, 991
TaqI TCGA 6 cut(s) 57, 76, 141, 177, 206, 319
TaqII GACCGA 1 cut(s) 714
TasI AATT 3 cut(s) 39, 158, 582
TatI WGTACW 2 cut(s) 744, 885
TauI GCSGC 3 cut(s) 15, 47, 50
TfiI GAWTC 3 cut(s) 20, 385, 664
TscAI CASTG 2 cut(s) 438, 1024
TseFI GTSAC 2 cut(s) 631, 970
TseI GCWGC 4 cut(s) 50, 562, 590, 892
Tsp45I GTSAC 2 cut(s) 631, 970
TspDTI ATGAA 6 cut(s) 201, 297, 475, 592, 601, 871
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 2 cut(s) 438, 1024
VpaK11BI GGWCC 2 cut(s) 93, 726
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 2 cut(s) 141, 206
XmnI GAANNNNTTC 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.