Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012243.1

Orthogroup ID

OG0013573

Physical Location & Seq

Genomic Coordinates Forward (+)

12950 .. 14501

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012243.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgggcacagcgtgttcctctctttattccacgtactcgctctatgggaaaccgagggactggaacttgcagggtttgcaagtttactttcggtcaatagtcatgtctaaagatgttatctacttgatatactgcttgacctttgtcacatcccatctttctctcaaattcgccttgattcccattctatgtcgggctctcgtacatgttgccaagttccttaggcgcaactttagtcaatcctcattgtacaggaaatacttggaagagccttgcgtttgggtcgagtcaaacacaactaccctcagcatactctcttcacatgctgagattggaaatggctttcttttgattatatctttgttctcgtggcagcgcaacattatacagacattcgcatattggcagctattgaagctcatgtatcatgctccggtgacttctgactaccatctgagtgtgtggactaagatagggaggacagttcatccattcatccaccgctacgccccattcttggagacacccgtttctacaatccagagatggtggttaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

186

Amino Acids

21.84

Weight (kDa)

9.63

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02420 AT3G02420
fragaria_vesca	FvH4_6g45520 FvH4_6g45520
malus_domestica	MD09G1082200.v1.1 MD17G1072900.v1.1
prunus_persica	Prupe.3G241500_v2.0.a1
pyrus_communis	pycom09g00870 pycom17g07380
rosa_chinensis	RchiOBHm_Chr2g0163461
rosa_laevigata	RLG00000021403
rosa_multiflora	Rmu_sc0012243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00087300
rosa_samantha	Rh2AG569900 Rh2BG582100 Rh2CG551900 Rh2DG591800
rosa_wichuraiana	Rw2G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	35, 204, 251
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	2 cut(s)	409, 418
AluI	AGCT	2 cut(s)	409, 418
Alw26I	GTCTC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	373, 406
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	228, 378
AsuHPI	GGTGA	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	385, 418
BccI	CCATC	3 cut(s)	162, 459, 540
BcoDI	GTCTC	1 cut(s)	515
BisI	GCNGC	2 cut(s)	374, 407
BlsI	GCNGC	2 cut(s)	375, 408
BoxI	GACNNNNGTC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	65
Bse21I	CCTNAGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	149, 487, 495
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	318, 319, 446
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	385, 418
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	8, 199
Bsp1407I	TGTACA	1 cut(s)	249
BspACI	CCGC	1 cut(s)	502
BspCNI	CTCAG	3 cut(s)	318, 319, 447
BspQI	GCTCTTC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	261, 322
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	33
BstDEI	CTNAG	5 cut(s)	221, 305, 327, 455, 468
BstF5I	GGATG	3 cut(s)	149, 487, 495
BstHHI	GCGC	2 cut(s)	228, 378
BstMAI	GTCTC	1 cut(s)	515
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 415
BstNSI	RCATGY	2 cut(s)	209, 326
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	385, 418
Bsu36I	CCTNAGG	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	149, 487, 495
CfoI	GCGC	2 cut(s)	228, 378
Csp6I	GTAC	3 cut(s)	34, 203, 250
CviAII	CATG	5 cut(s)	103, 206, 323, 421, 428
CviJI	RGCY	5 cut(s)	197, 271, 342, 409, 418
CviKI_1	RGCY	5 cut(s)	197, 271, 342, 409, 418
CviQI	GTAC	3 cut(s)	34, 203, 250
DdeI	CTNAG	5 cut(s)	221, 305, 327, 455, 468
DraIII	CACNNNGTG	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	261, 322
EarI	CTCTTC	2 cut(s)	261, 322
Eco24I	GRGCYC	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	5 cut(s)	106, 209, 326, 424, 431
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	102, 205, 322, 420, 427
Fnu4HI	GCNGC	2 cut(s)	374, 407
FokI	GGATG	3 cut(s)	136, 474, 482
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	374, 407
GlaI	GCGC	2 cut(s)	227, 377
GluI	GCNGC	2 cut(s)	374, 407
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	2 cut(s)	228, 378
Hin1II	CATG	5 cut(s)	106, 209, 326, 424, 431
Hin6I	GCGC	2 cut(s)	226, 376
HinP1I	GCGC	2 cut(s)	226, 376
HinfI	GANTC	2 cut(s)	178, 287
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	85, 465
Hpy188I	TCNGA	2 cut(s)	445, 456
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	2 cut(s)	85, 465
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	70, 79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 415
HpyF3I	CTNAG	5 cut(s)	221, 305, 327, 455, 468
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	5 cut(s)	106, 209, 326, 424, 431
HspAI	GCGC	2 cut(s)	226, 376
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	5 cut(s)	46, 56, 238, 447, 554
Lsp1109I	GCAGC	2 cut(s)	385, 418
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	145, 436
MboII	GAAGA	2 cut(s)	278, 309
MhlI	GDGCHC	2 cut(s)	8, 199
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	28, 48, 253, 314, 471
MseI	TTAA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	76, 415
NlaIII	CATG	5 cut(s)	106, 209, 326, 424, 431
NmuCI	GTSAC	2 cut(s)	145, 436
NspI	RCATGY	2 cut(s)	209, 326
PciI	ACATGT	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	375, 408
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	33
PscI	ACATGT	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	143
RsaI	GTAC	3 cut(s)	35, 204, 251
RsaNI	GTAC	3 cut(s)	34, 203, 250
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	2 cut(s)	374, 407
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	8, 199
SetI	ASST	5 cut(s)	35, 143, 411, 420, 560
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	2 cut(s)	145, 436
TseI	GCWGC	2 cut(s)	373, 406
Tsp45I	GTSAC	2 cut(s)	145, 436
TspDTI	ATGAA	2 cut(s)	476, 484
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	2 cut(s)	209, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.