MD09G1082200.v1.1

Transmembrane protein 33 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013573
Physical Location & Seq
Forward (+)
5773598 .. 5777439
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1082200.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGGGGGAGAGAGAGAGGACCCACAGCAGCTCAAGAGAGCGGCGGCGGCGGCCTACGACTACGAGAACGACCCCAGGTGGGCCGACTACTGGTCCAACATCCTCATCCCTCCTCACATGTCCTCTCGCAGCGACGTCGTCGACCATTTTAAGCGCAAGTTCTACCAACGCTTTATCGATCCTGAACTTATGGTAGACGTGATGTCATCTAGCAGTTCTGCCCAGCCAAACGGACCATCTGCCTCGTCCCGGACGACAAATGACCAAACTCAGCCCCGTAGCGCAGGTTCAACTCCCAGAACTCCAGGGACACCAGCAGCAGCTCCTCCAACTTCTCTGCGTTGGGATCGAAAAACCATTCAGTTTTCTGTAAACGCTTGGGTGTTTCTTGTGGCTGTGTTTGCAATTTTCCCACTGGTGCCTAGAAACCTTTCACATAGGGCATATCGGCTTTCCTTTATGGGCACTGCATGTTCATCTCTGTATTCCTTGTACTCACTCTACGGGAAACCAAGGGCTTGGAACTTGCAGGCTTTTCAAGTGTACTTTCAGTCAATTATCATGACTAAGGATTTTATCTACTTGATGTACTGCCTTACCTTTGTCACATCACACCTTTGCCTAAAATTCGCACTGATTCCCATTCTGTGTCGGGCTCTTGAGCACGTTGCCAAGTTCCTTAGGCGCAATTTTAGTCAATCCTCCTTGTACAGGAAGTACCTGGAAAGGCTTTGTGTTTGGGTGGAGTCAAATACAACTACCCTCAGCATACTTTCTTCACATGCTGAGATCGGAGTTGGCTTCCTTCTGATTATTTCATTGTTCTCGTGGCAACGCAACATTGTACAGGCATTCATGTACTGGCAGCTCTTGAAGCTCATGTATCATGCCCCAGTGACTGCTAACTACCATCTGAGCGTGTGGACCAAGATCGGAAGGATAGTTCATCCTCTCATCCACCGCTACACCCCGTTCTTGGGAACTCCCCTCTCTGCTGTCCAGAGATGGTGGTTGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

340

Amino Acids

39.14

Weight (kDa)

9.84

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM33_Pom33 PF03661 120 - 300 5e-16 Transmembrane protein 33/Nucleoporin POM33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02420 AT3G02420
fragaria_vesca FvH4_6g45520 FvH4_6g45520
malus_domestica MD09G1082200.v1.1 MD17G1072900.v1.1
prunus_persica Prupe.3G241500_v2.0.a1
pyrus_communis pycom09g00870 pycom17g07380
rosa_chinensis RchiOBHm_Chr2g0163461
rosa_laevigata RLG00000021403
rosa_multiflora Rmu_sc0012243.1_g000002
rosa_roxburghii Rroxscaffold_2G00087300
rosa_samantha Rh2AG569900 Rh2BG582100 Rh2CG551900 Rh2DG591800
rosa_wichuraiana Rw2G047180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 141, 195
AciI CCGC 6 cut(s) 41, 44, 47, 50, 961, 1015
AclWI GGATC 2 cut(s) 173, 354
AcsI RAATTY 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 7 cut(s) 494, 545, 590, 710, 719, 846, 860
AfiI CCNNNNNNNGG 6 cut(s) 79, 90, 249, 711, 976, 977
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 291, 539, 874
AhdI GACNNNNNGTC 2 cut(s) 91, 202
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 3 cut(s) 74, 304, 720
AloI GAACNNNNNNTCC 2 cut(s) 927, 959
AluBI AGCT 4 cut(s) 31, 323, 868, 877
AluI AGCT 4 cut(s) 31, 323, 868, 877
Alw21I GWGCWC 1 cut(s) 666
AlwI GGATC 2 cut(s) 173, 354
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 2 cut(s) 51, 81
ApeKI GCWGC 5 cut(s) 28, 129, 317, 320, 865
ApoI RAATTY 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 430
AspLEI GCGC 3 cut(s) 156, 284, 687
AspS9I GGNCC 5 cut(s) 19, 81, 93, 233, 924
AsuC2I CCSGG 1 cut(s) 250
AvaII GGWCC 4 cut(s) 19, 93, 233, 924
AxyI CCTNAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 658
BauI CACGAG 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 764
BbvI GCAGC 5 cut(s) 40, 141, 329, 332, 877
BccI CCATC 3 cut(s) 244, 918, 999
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 3 cut(s) 76, 306, 722
BcnI CCSGG 1 cut(s) 250
BfaI CTAG 2 cut(s) 210, 423
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 9 cut(s) 29, 42, 45, 48, 51, 130, 318, 321, 866
BlsI GCNGC 9 cut(s) 30, 43, 46, 49, 52, 131, 319, 322, 867
Bme1390I CCNGG 4 cut(s) 76, 250, 306, 722
Bme18I GGWCC 4 cut(s) 19, 93, 233, 924
BmeRI GACNNNNNGTC 2 cut(s) 91, 202
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 5 cut(s) 19, 81, 93, 233, 924
BmiI GGNNCC 2 cut(s) 21, 420
BmrFI CCNGG 4 cut(s) 76, 250, 306, 722
BmrI ACTGGG 1 cut(s) 887
BmuI ACTGGG 1 cut(s) 887
BpmI CTGGAG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 764
BpuEI CTTGAG 2 cut(s) 17, 680
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 74, 305, 512
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 90, 249, 711, 976, 977
Bse1I ACTGG 4 cut(s) 95, 420, 866, 893
Bse21I CCTNAGG 1 cut(s) 680
BseBI CCWGG 3 cut(s) 76, 306, 722
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 74, 305, 512
BseGI GGATG 4 cut(s) 99, 105, 946, 954
BseLI CCNNNNNNNGG 6 cut(s) 79, 90, 249, 711, 976, 977
BseMII CTCAG 4 cut(s) 284, 777, 778, 905
BseNI ACTGG 4 cut(s) 95, 420, 866, 893
BseRI GAGGAG 2 cut(s) 102, 315
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 5 cut(s) 40, 141, 329, 332, 877
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 2 cut(s) 53, 83
BshNI GGYRCC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 666
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 2 cut(s) 232, 322
BslI CCNNNNNNNGG 6 cut(s) 79, 90, 249, 711, 976, 977
BsmFI GGGAC 2 cut(s) 232, 322
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 2 cut(s) 53, 83
Bsp1286I GDGCHC 3 cut(s) 467, 658, 666
Bsp1407I TGTACA 2 cut(s) 708, 844
Bsp143I GATC 4 cut(s) 178, 346, 789, 930
BspACI CCGC 6 cut(s) 41, 44, 47, 50, 961, 1015
BspANI GGCC 2 cut(s) 53, 83
BspCNI CTCAG 4 cut(s) 283, 777, 778, 906
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 21, 420
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 173, 354
BspT107I GGYRCC 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 41
BsrGI TGTACA 2 cut(s) 708, 844
BsrI ACTGG 4 cut(s) 95, 420, 866, 893
BssECI CCNNGG 3 cut(s) 74, 305, 512
BssMI GATC 4 cut(s) 178, 346, 789, 930
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 826
Bst2UI CCWGG 3 cut(s) 76, 306, 722
BstACI GRCGYC 1 cut(s) 135
BstAUI TGTACA 2 cut(s) 708, 844
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 6 cut(s) 270, 567, 680, 764, 786, 914
BstENI CCTNNNNNAGG 1 cut(s) 709
BstF5I GGATG 4 cut(s) 99, 105, 946, 954
BstHHI GCGC 3 cut(s) 156, 284, 687
BstKTI GATC 4 cut(s) 181, 349, 792, 933
BstMBI GATC 4 cut(s) 178, 346, 789, 930
BstMWI GCNNNNNNNGC 4 cut(s) 47, 50, 401, 874
BstNI CCWGG 3 cut(s) 76, 306, 722
BstNSI RCATGY 3 cut(s) 121, 474, 785
BstSCI CCNGG 4 cut(s) 74, 248, 304, 720
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 5 cut(s) 40, 141, 329, 332, 877
BstXI CCANNNNNNTGG 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 680
BsuRI GGCC 2 cut(s) 53, 83
BsuTUI ATCGAT 1 cut(s) 177
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 4 cut(s) 99, 105, 946, 954
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 413, 465, 632, 900
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 531
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 561
CfoI GCGC 3 cut(s) 156, 284, 687
Cfr13I GGNCC 5 cut(s) 19, 81, 93, 233, 924
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 7 cut(s) 493, 544, 589, 709, 718, 845, 859
CviAII CATG 7 cut(s) 118, 471, 562, 782, 856, 880, 887
CviQI GTAC 7 cut(s) 493, 544, 589, 709, 718, 845, 859
DdeI CTNAG 6 cut(s) 270, 567, 680, 764, 786, 914
DpnI GATC 4 cut(s) 180, 348, 791, 932
DpnII GATC 4 cut(s) 178, 346, 789, 930
DriI GACNNNNNGTC 2 cut(s) 91, 202
Eam1105I GACNNNNNGTC 2 cut(s) 91, 202
Eco130I CCWWGG 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 658
Eco47I GGWCC 4 cut(s) 19, 93, 233, 924
Eco81I CCTNAGG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 74, 304, 720
EcoT14I CCWWGG 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 7 cut(s) 121, 474, 565, 785, 859, 883, 890
FaqI GGGAC 2 cut(s) 232, 322
FatI CATG 7 cut(s) 117, 470, 561, 781, 855, 879, 886
FblI GTMKAC 2 cut(s) 141, 195
Fnu4HI GCNGC 9 cut(s) 29, 42, 45, 48, 51, 130, 318, 321, 866
FokI GGATG 4 cut(s) 86, 92, 933, 941
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 9 cut(s) 29, 42, 45, 48, 51, 130, 318, 321, 866
FspBI CTAG 2 cut(s) 210, 423
GlaI GCGC 3 cut(s) 155, 283, 686
GluI GCNGC 9 cut(s) 29, 42, 45, 48, 51, 130, 318, 321, 866
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 53, 83
HapII CCGG 1 cut(s) 250
HhaI GCGC 3 cut(s) 156, 284, 687
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 7 cut(s) 121, 474, 565, 785, 859, 883, 890
Hin6I GCGC 3 cut(s) 154, 282, 685
HinP1I GCGC 3 cut(s) 154, 282, 685
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 637, 746
HpaII CCGG 1 cut(s) 250
Hpy166II GTNNAC 5 cut(s) 142, 196, 373, 544, 924
Hpy188I TCNGA 4 cut(s) 794, 810, 915, 935
Hpy188III TCNNGA 6 cut(s) 34, 182, 562, 659, 871, 1000
Hpy8I GTNNAC 5 cut(s) 142, 196, 373, 544, 924
Hpy99I CGWCG 3 cut(s) 137, 140, 143
HpyAV CCTTC 2 cut(s) 815, 930
HpyCH4IV ACGT 3 cut(s) 135, 198, 666
HpyCH4V TGCA 3 cut(s) 404, 470, 529
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 50, 401, 874
HpyF3I CTNAG 6 cut(s) 270, 567, 680, 764, 786, 914
HpySE526I ACGT 3 cut(s) 135, 198, 666
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 7 cut(s) 121, 474, 565, 785, 859, 883, 890
HspAI GCGC 3 cut(s) 154, 282, 685
Kzo9I GATC 4 cut(s) 178, 346, 789, 930
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 5 cut(s) 40, 141, 329, 332, 877
MaeI CTAG 2 cut(s) 210, 423
MaeII ACGT 3 cut(s) 135, 198, 666
MaeIII GTNAC 2 cut(s) 604, 895
MalI GATC 4 cut(s) 180, 348, 791, 932
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 178, 346, 789, 930
MboII GAAGA 1 cut(s) 768
MhlI GDGCHC 3 cut(s) 467, 658, 666
MluCI AATT 4 cut(s) 405, 555, 626, 688
MlyI GAGTC 1 cut(s) 755
MmeI TCCRAC 2 cut(s) 120, 353
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 4 cut(s) 76, 250, 306, 722
Mva1269I GAATGC 1 cut(s) 851
MvaI CCWGG 3 cut(s) 76, 306, 722
MwoI GCNNNNNNNGC 4 cut(s) 47, 50, 401, 874
NciI CCSGG 1 cut(s) 250
NdeII GATC 4 cut(s) 178, 346, 789, 930
NlaIII CATG 7 cut(s) 121, 474, 565, 785, 859, 883, 890
NlaIV GGNNCC 2 cut(s) 21, 420
NmuCI GTSAC 2 cut(s) 604, 895
NspI RCATGY 3 cut(s) 121, 474, 785
PagI TCATGA 1 cut(s) 561
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 851
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 9 cut(s) 30, 43, 46, 49, 52, 131, 319, 322, 867
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 74, 304, 720
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 3 cut(s) 74, 304, 720
PspN4I GGNNCC 2 cut(s) 21, 420
PspPI GGNCC 5 cut(s) 19, 81, 93, 233, 924
PspPPI RGGWCCY 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PstNI CAGNNNCTG 1 cut(s) 899
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 7 cut(s) 494, 545, 590, 710, 719, 846, 860
RsaNI GTAC 7 cut(s) 493, 544, 589, 709, 718, 845, 859
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 9 cut(s) 29, 42, 45, 48, 51, 130, 318, 321, 866
Sau3AI GATC 4 cut(s) 178, 346, 789, 930
Sau96I GGNCC 5 cut(s) 19, 81, 93, 233, 924
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 4 cut(s) 76, 250, 306, 722
SduI GDGCHC 3 cut(s) 467, 658, 666
SinI GGWCC 4 cut(s) 19, 93, 233, 924
SmlI CTYRAG 2 cut(s) 32, 659
SmoI CTYRAG 2 cut(s) 32, 659
Sse9I AATT 4 cut(s) 405, 555, 626, 688
SsiI CCGC 6 cut(s) 41, 44, 47, 50, 961, 1015
SspMI CTAG 2 cut(s) 210, 423
StyD4I CCNGG 4 cut(s) 74, 248, 304, 720
StyI CCWWGG 1 cut(s) 512
TaiI ACGT 3 cut(s) 138, 201, 669
TaqI TCGA 3 cut(s) 141, 177, 349
TasI AATT 4 cut(s) 405, 555, 626, 688
TatI WGTACW 6 cut(s) 492, 543, 588, 708, 844, 858
TauI GCSGC 4 cut(s) 44, 47, 50, 53
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 4 cut(s) 420, 472, 639, 900
TseFI GTSAC 2 cut(s) 604, 895
TseI GCWGC 5 cut(s) 28, 129, 317, 320, 865
Tsp45I GTSAC 2 cut(s) 604, 895
TspDTI ATGAA 4 cut(s) 465, 807, 844, 935
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 4 cut(s) 420, 472, 639, 900
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 4 cut(s) 19, 93, 233, 924
XagI CCTNNNNNAGG 1 cut(s) 709
XapI RAATTY 1 cut(s) 626
XceI RCATGY 3 cut(s) 121, 474, 785
XmiI GTMKAC 2 cut(s) 141, 195
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 2 cut(s) 210, 423
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.